RNA–Protein interactions for RNA: ENST00000536634.5

CLIP1-207, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-207ENST00000536634 AEBP2Q6ZN18 517 aaPredicted RBP30.16■■■□□ 2.42
CLIP1-207ENST00000536634 CHIC1Q5VXU3 224 aa29.3■■■□□ 2.28
CLIP1-207ENST00000536634 PHF23Q9BUL5 403 aaPredicted RBP25.82■■□□□ 1.72
CLIP1-207ENST00000536634 SENP3Q9H4L4 574 aaPredicted RBP25.59■■□□□ 1.69
CLIP1-207ENST00000536634 FOXD1Q16676 465 aa23.94■■□□□ 1.42
CLIP1-207ENST00000536634 PLPPR3Q6T4P5 718 aa23.72■■□□□ 1.39
CLIP1-207ENST00000536634 POTEDQ86YR6 584 aa23.45■■□□□ 1.34
CLIP1-207ENST00000536634 PPP6R1Q9UPN7 881 aa22.82■■□□□ 1.24
CLIP1-207ENST00000536634 ADRA2BP18089 450 aa22.78■■□□□ 1.24
CLIP1-207ENST00000536634 MSH5O43196 834 aa22.72■■□□□ 1.23
CLIP1-207ENST00000536634 PIAS4Q8N2W9 510 aaPredicted RBP22.34■■□□□ 1.17
CLIP1-207ENST00000536634 PPP4R3CPQ6ZMV5 832 aa20.92■□□□□ 0.94
CLIP1-207ENST00000536634 MAPK8IP2Q13387 824 aaPredicted RBP20.71■□□□□ 0.91
CLIP1-207ENST00000536634 SCAF1Q9H7N4 1312 aaKnown RBP20.71■□□□□ 0.91
CLIP1-207ENST00000536634 KCNA4P22459 653 aa20.39■□□□□ 0.85
CLIP1-207ENST00000536634 DMRT2Q9Y5R5 561 aa20.37■□□□□ 0.85
CLIP1-207ENST00000536634 CNKSR2Q8WXI2 1034 aa20.33■□□□□ 0.85
CLIP1-207ENST00000536634 NCBP3Q53F19 620 aaKnown RBP20.29■□□□□ 0.84
CLIP1-207ENST00000536634 NPM3O75607 178 aaKnown RBP20.07■□□□□ 0.8
CLIP1-207ENST00000536634 RNF216Q9NWF9 866 aaPredicted RBP19.95■□□□□ 0.78
CLIP1-207ENST00000536634 CACNB1Q02641 598 aaPredicted RBP19.94■□□□□ 0.78
CLIP1-207ENST00000536634 HOXD11P31277 338 aaPredicted RBP19.91■□□□□ 0.78
CLIP1-207ENST00000536634 DCAF8L1A6NGE4 600 aa19.49■□□□□ 0.71
CLIP1-207ENST00000536634 DNAJC5BQ9UF47 199 aa19.44■□□□□ 0.7
CLIP1-207ENST00000536634 SLC4A1APQ9BWU0 796 aaKnown RBP19.35■□□□□ 0.69
CLIP1-207ENST00000536634 RNF39Q9H2S5 420 aa19.31■□□□□ 0.68
CLIP1-207ENST00000536634 C1QBPQ07021 282 aaKnown RBP19.01■□□□□ 0.63
CLIP1-207ENST00000536634 SLC4A2P04920 1241 aa19■□□□□ 0.63
CLIP1-207ENST00000536634 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.96■□□□□ 0.632e-7■■□□□ 13.3
CLIP1-207ENST00000536634 ZBTB22O15209 634 aa18.8■□□□□ 0.6
CLIP1-207ENST00000536634 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
CLIP1-207ENST00000536634 FOXD4L1Q9NU39 408 aa18.73■□□□□ 0.59
CLIP1-207ENST00000536634 U3KPZ7 1027 aaPredicted RBP18.69■□□□□ 0.58
CLIP1-207ENST00000536634 CSRNP3Q8WYN3 585 aa18.57■□□□□ 0.56
CLIP1-207ENST00000536634 MYCNP04198 464 aaPredicted RBP18.5■□□□□ 0.55
CLIP1-207ENST00000536634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.31■□□□□ 0.52
CLIP1-207ENST00000536634 HNRNPUL2Q1KMD3 747 aaKnown RBP18.31■□□□□ 0.52
CLIP1-207ENST00000536634 SAMD1Q6SPF0 538 aaPredicted RBP18.27■□□□□ 0.52
CLIP1-207ENST00000536634 POTEHQ6S545 545 aa18.23■□□□□ 0.51
CLIP1-207ENST00000536634 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
CLIP1-207ENST00000536634 APLP2Q06481 763 aa18.12■□□□□ 0.49
CLIP1-207ENST00000536634 ATF5Q9Y2D1 282 aaPredicted RBP18.11■□□□□ 0.49
CLIP1-207ENST00000536634 CAPN15O75808 1086 aa18.1■□□□□ 0.49
CLIP1-207ENST00000536634 ATXN8OSP0DMR3 200 aa18.05■□□□□ 0.48
CLIP1-207ENST00000536634 TRHP20396 242 aaPredicted RBP18■□□□□ 0.47
CLIP1-207ENST00000536634 ZNF219Q9P2Y4 722 aaPredicted RBP17.95■□□□□ 0.46
CLIP1-207ENST00000536634 DSG3P32926 999 aa17.83■□□□□ 0.44
CLIP1-207ENST00000536634 ABCB7O75027 752 aa17.8■□□□□ 0.44
CLIP1-207ENST00000536634 POLA2Q14181 598 aa17.68■□□□□ 0.42
CLIP1-207ENST00000536634 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
CLIP1-207ENST00000536634 MKRN4PQ13434 485 aaPredicted RBP17.31■□□□□ 0.36
CLIP1-207ENST00000536634 FBLN2P98095 1184 aa17.24■□□□□ 0.35
CLIP1-207ENST00000536634 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
CLIP1-207ENST00000536634 RBM42Q9BTD8 480 aaKnown RBP17.03■□□□□ 0.32
CLIP1-207ENST00000536634 CHRDL2Q6WN34 429 aa16.94■□□□□ 0.3
CLIP1-207ENST00000536634 SPDYE2BA6NHP3 402 aa16.88■□□□□ 0.29
CLIP1-207ENST00000536634 SPDYE6P0CI01 402 aa16.88■□□□□ 0.29
CLIP1-207ENST00000536634 SPDYE2Q495Y8 402 aa16.88■□□□□ 0.29
CLIP1-207ENST00000536634 SPDYE4A6NLX3 237 aa16.82■□□□□ 0.28
CLIP1-207ENST00000536634 ZNF692Q9BU19 519 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-207ENST00000536634 SSUH2Q9Y2M2 353 aa16.78■□□□□ 0.28
CLIP1-207ENST00000536634 FKBP8Q14318 412 aa16.77■□□□□ 0.28
CLIP1-207ENST00000536634 SP7Q8TDD2 431 aaPredicted RBP16.73■□□□□ 0.27
CLIP1-207ENST00000536634 AKT1S1Q96B36 256 aa16.72■□□□□ 0.27
CLIP1-207ENST00000536634 PABPN1Q86U42 306 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLIP1-207ENST00000536634 REM2Q8IYK8 340 aaPredicted RBP16.6■□□□□ 0.25
CLIP1-207ENST00000536634 PROM2Q8N271 834 aa16.55■□□□□ 0.24
CLIP1-207ENST00000536634 PITPNM1O00562 1244 aa16.43■□□□□ 0.22
CLIP1-207ENST00000536634 SPDYE1Q8NFV5 336 aaPredicted RBP16.39■□□□□ 0.21
CLIP1-207ENST00000536634 PIP4P2Q8N4L2 257 aa16.37■□□□□ 0.21
CLIP1-207ENST00000536634 CLEC11AQ9Y240 323 aa16.35■□□□□ 0.21
CLIP1-207ENST00000536634 HAX1O00165 279 aa16.29■□□□□ 0.2
CLIP1-207ENST00000536634 STAG3Q9UJ98 1225 aa16.24■□□□□ 0.19
CLIP1-207ENST00000536634 FXR2P51116 673 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLIP1-207ENST00000536634 PRR29P0C7W0 189 aa16.17■□□□□ 0.18
CLIP1-207ENST00000536634 FBXO3Q9UK99 471 aa16.12■□□□□ 0.17
CLIP1-207ENST00000536634 EVX2Q03828 476 aa16.03■□□□□ 0.16
CLIP1-207ENST00000536634 CHADLQ6NUI6 762 aa16.01■□□□□ 0.15
CLIP1-207ENST00000536634 CREBZFQ9NS37 354 aa16.01■□□□□ 0.15
CLIP1-207ENST00000536634 PRKAR2AP13861 404 aaKnown RBP15.99■□□□□ 0.15
CLIP1-207ENST00000536634 VASPP50552 380 aaPredicted RBP15.98■□□□□ 0.15
CLIP1-207ENST00000536634 MIER1Q8N108 512 aa15.94■□□□□ 0.14
CLIP1-207ENST00000536634 PLCD3Q8N3E9 789 aa15.91■□□□□ 0.14
CLIP1-207ENST00000536634 MNX1P50219 401 aaPredicted RBP15.84■□□□□ 0.13
CLIP1-207ENST00000536634 FARP1Q9Y4F1 1045 aaPredicted RBP15.81■□□□□ 0.12
CLIP1-207ENST00000536634 PLEKHG5O94827 1062 aa15.79■□□□□ 0.12
CLIP1-207ENST00000536634 IFNLR1Q8IU57 520 aaPredicted RBP15.77■□□□□ 0.12
CLIP1-207ENST00000536634 LHX8Q68G74 356 aa15.69■□□□□ 0.1
CLIP1-207ENST00000536634 KLHL34Q8N239 644 aa15.69■□□□□ 0.1
CLIP1-207ENST00000536634 C19orf67A6NJJ6 358 aa15.68■□□□□ 0.1
CLIP1-207ENST00000536634 ZBTB47Q9UFB7 747 aaPredicted RBP15.67■□□□□ 0.1
CLIP1-207ENST00000536634 NPM1P06748 294 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLIP1-207ENST00000536634 GABBR2O75899 941 aa15.64■□□□□ 0.09
CLIP1-207ENST00000536634 NUBP1P53384 320 aa15.58■□□□□ 0.08
CLIP1-207ENST00000536634 SPOCK2Q92563 424 aa15.56■□□□□ 0.08
CLIP1-207ENST00000536634 RASEFQ8IZ41 740 aa15.55■□□□□ 0.08
CLIP1-207ENST00000536634 CD44P16070 742 aaKnown RBP15.53■□□□□ 0.08
CLIP1-207ENST00000536634 TSPYL2Q9H2G4 693 aaPredicted RBP15.46■□□□□ 0.07
CLIP1-207ENST00000536634 ZRANB1Q9UGI0 708 aa15.43■□□□□ 0.06
CLIP1-207ENST00000536634 FAM212AQ96EL1 285 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms