RNA–Protein interactions for RNA: ENST00000535887.1

C12orf4-204, Transcript of chromosome 12 open reading frame 4, humanhuman

TSL 3

Gene C12orf4, Length 568 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C12orf4-204ENST00000535887 AEBP2Q6ZN18 517 aaPredicted RBP34.82■■■■□ 3.16
C12orf4-204ENST00000535887 CHIC1Q5VXU3 224 aa32.67■■■□□ 2.82
C12orf4-204ENST00000535887 SENP3Q9H4L4 574 aaPredicted RBP29.56■■■□□ 2.32
C12orf4-204ENST00000535887 PHF23Q9BUL5 403 aaPredicted RBP29.22■■■□□ 2.27
C12orf4-204ENST00000535887 FOXD1Q16676 465 aa27.71■■■□□ 2.03
C12orf4-204ENST00000535887 PLPPR3Q6T4P5 718 aa25.9■■□□□ 1.74
C12orf4-204ENST00000535887 POTEDQ86YR6 584 aa25.9■■□□□ 1.74
C12orf4-204ENST00000535887 MSH5O43196 834 aa25.89■■□□□ 1.74
C12orf4-204ENST00000535887 PIAS4Q8N2W9 510 aaPredicted RBP25.76■■□□□ 1.71
C12orf4-204ENST00000535887 PPP6R1Q9UPN7 881 aa25.75■■□□□ 1.71
C12orf4-204ENST00000535887 ADRA2BP18089 450 aa25.62■■□□□ 1.69
C12orf4-204ENST00000535887 MAPK8IP2Q13387 824 aaPredicted RBP23.66■■□□□ 1.38
C12orf4-204ENST00000535887 DMRT2Q9Y5R5 561 aa23.44■■□□□ 1.34
C12orf4-204ENST00000535887 SCAF1Q9H7N4 1312 aaKnown RBP23.25■■□□□ 1.31
C12orf4-204ENST00000535887 PPP4R3CPQ6ZMV5 832 aa22.74■■□□□ 1.23
C12orf4-204ENST00000535887 DCAF8L1A6NGE4 600 aa22.48■■□□□ 1.19
C12orf4-204ENST00000535887 HOXD11P31277 338 aaPredicted RBP22.48■■□□□ 1.19
C12orf4-204ENST00000535887 CACNB1Q02641 598 aaPredicted RBP22.45■■□□□ 1.18
C12orf4-204ENST00000535887 CNKSR2Q8WXI2 1034 aa22.32■■□□□ 1.16
C12orf4-204ENST00000535887 RNF216Q9NWF9 866 aaPredicted RBP22.2■■□□□ 1.14
C12orf4-204ENST00000535887 RNF39Q9H2S5 420 aa22.16■■□□□ 1.14
C12orf4-204ENST00000535887 C1QBPQ07021 282 aaKnown RBP21.74■■□□□ 1.07
C12orf4-204ENST00000535887 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
C12orf4-204ENST00000535887 DNAJC5BQ9UF47 199 aa21.66■■□□□ 1.06
C12orf4-204ENST00000535887 NPM3O75607 178 aaKnown RBP21.48■■□□□ 1.03
C12orf4-204ENST00000535887 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.37■■□□□ 1.01
C12orf4-204ENST00000535887 U3KPZ7 1027 aaPredicted RBP20.98■□□□□ 0.95
C12orf4-204ENST00000535887 KCNA4P22459 653 aa20.85■□□□□ 0.93
C12orf4-204ENST00000535887 SPINK5Q9NQ38 1064 aaPredicted RBP20.79■□□□□ 0.92
C12orf4-204ENST00000535887 CAPN15O75808 1086 aa20.68■□□□□ 0.9
C12orf4-204ENST00000535887 DSG3P32926 999 aa20.67■□□□□ 0.9
C12orf4-204ENST00000535887 SLC4A2P04920 1241 aa20.64■□□□□ 0.89
C12orf4-204ENST00000535887 TRHP20396 242 aaPredicted RBP20.29■□□□□ 0.84
C12orf4-204ENST00000535887 ABCB7O75027 752 aa20.23■□□□□ 0.83
C12orf4-204ENST00000535887 POTEHQ6S545 545 aa20.2■□□□□ 0.82
C12orf4-204ENST00000535887 ZNF219Q9P2Y4 722 aaPredicted RBP20.16■□□□□ 0.82
C12orf4-204ENST00000535887 APLP2Q06481 763 aa20.12■□□□□ 0.81
C12orf4-204ENST00000535887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.09■□□□□ 0.81
C12orf4-204ENST00000535887 HNRNPUL2Q1KMD3 747 aaKnown RBP20.09■□□□□ 0.81
C12orf4-204ENST00000535887 SAMD1Q6SPF0 538 aaPredicted RBP20■□□□□ 0.79
C12orf4-204ENST00000535887 MYCNP04198 464 aaPredicted RBP19.79■□□□□ 0.76
C12orf4-204ENST00000535887 SLC4A1APQ9BWU0 796 aaKnown RBP19.79■□□□□ 0.76
C12orf4-204ENST00000535887 POLA2Q14181 598 aa19.69■□□□□ 0.74
C12orf4-204ENST00000535887 RBM42Q9BTD8 480 aaKnown RBP19.58■□□□□ 0.72
C12orf4-204ENST00000535887 ATF5Q9Y2D1 282 aaPredicted RBP19.53■□□□□ 0.72
C12orf4-204ENST00000535887 FOXD4L1Q9NU39 408 aa19.45■□□□□ 0.7
C12orf4-204ENST00000535887 CHRDL2Q6WN34 429 aa19.37■□□□□ 0.69
C12orf4-204ENST00000535887 ZBTB22O15209 634 aa19.22■□□□□ 0.67
C12orf4-204ENST00000535887 AKT1S1Q96B36 256 aa19.14■□□□□ 0.65
C12orf4-204ENST00000535887 ZBTB12Q9Y330 459 aaPredicted RBP19.12■□□□□ 0.65
C12orf4-204ENST00000535887 OSCARQ8IYS5 282 aa19.09■□□□□ 0.65
C12orf4-204ENST00000535887 REM2Q8IYK8 340 aaPredicted RBP19.02■□□□□ 0.64
C12orf4-204ENST00000535887 CSRNP3Q8WYN3 585 aa18.95■□□□□ 0.62
C12orf4-204ENST00000535887 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
C12orf4-204ENST00000535887 PIP4P2Q8N4L2 257 aa18.9■□□□□ 0.62
C12orf4-204ENST00000535887 PITPNM1O00562 1244 aa18.84■□□□□ 0.61
C12orf4-204ENST00000535887 ATXN8OSP0DMR3 200 aa18.83■□□□□ 0.6
C12orf4-204ENST00000535887 SP7Q8TDD2 431 aaPredicted RBP18.79■□□□□ 0.6
C12orf4-204ENST00000535887 FXR2P51116 673 aaKnown RBP eCLIP18.71■□□□□ 0.59
C12orf4-204ENST00000535887 MKRN4PQ13434 485 aaPredicted RBP18.59■□□□□ 0.57
C12orf4-204ENST00000535887 SPDYE2BA6NHP3 402 aa18.58■□□□□ 0.56
C12orf4-204ENST00000535887 HAX1O00165 279 aa18.58■□□□□ 0.56
C12orf4-204ENST00000535887 SPDYE6P0CI01 402 aa18.58■□□□□ 0.56
C12orf4-204ENST00000535887 SPDYE2Q495Y8 402 aa18.58■□□□□ 0.56
C12orf4-204ENST00000535887 FBLN2P98095 1184 aa18.57■□□□□ 0.56
C12orf4-204ENST00000535887 EVX2Q03828 476 aa18.48■□□□□ 0.55
C12orf4-204ENST00000535887 CLEC11AQ9Y240 323 aa18.36■□□□□ 0.53
C12orf4-204ENST00000535887 SSUH2Q9Y2M2 353 aa18.36■□□□□ 0.53
C12orf4-204ENST00000535887 ZNF692Q9BU19 519 aaPredicted RBP18.34■□□□□ 0.53
C12orf4-204ENST00000535887 PRKAR2AP13861 404 aaKnown RBP18.32■□□□□ 0.52
C12orf4-204ENST00000535887 SPDYE1Q8NFV5 336 aaPredicted RBP18.31■□□□□ 0.52
C12orf4-204ENST00000535887 C19orf67A6NJJ6 358 aa18.13■□□□□ 0.49
C12orf4-204ENST00000535887 CHADLQ6NUI6 762 aa18.12■□□□□ 0.49
C12orf4-204ENST00000535887 PABPN1Q86U42 306 aaKnown RBP eCLIP18.09■□□□□ 0.49
C12orf4-204ENST00000535887 PRR29P0C7W0 189 aa17.98■□□□□ 0.47
C12orf4-204ENST00000535887 GABBR2O75899 941 aa17.95■□□□□ 0.46
C12orf4-204ENST00000535887 FARP1Q9Y4F1 1045 aaPredicted RBP17.75■□□□□ 0.43
C12orf4-204ENST00000535887 CD44P16070 742 aaKnown RBP17.71■□□□□ 0.43
C12orf4-204ENST00000535887 POTEIP0CG38 1075 aa17.64■□□□□ 0.41
C12orf4-204ENST00000535887 LHX8Q68G74 356 aa17.62■□□□□ 0.41
C12orf4-204ENST00000535887 CREBZFQ9NS37 354 aa17.55■□□□□ 0.4
C12orf4-204ENST00000535887 SPDYE4A6NLX3 237 aa17.46■□□□□ 0.39
C12orf4-204ENST00000535887 STAG3Q9UJ98 1225 aa17.42■□□□□ 0.38
C12orf4-204ENST00000535887 ZNF579Q8NAF0 562 aaKnown RBP17.41■□□□□ 0.38
C12orf4-204ENST00000535887 ZRANB1Q9UGI0 708 aa17.41■□□□□ 0.38
C12orf4-204ENST00000535887 CLCN6P51797 869 aa17.38■□□□□ 0.37
C12orf4-204ENST00000535887 DCBLD2Q96PD2 775 aa17.32■□□□□ 0.36
C12orf4-204ENST00000535887 GALR2O43603 387 aaPredicted RBP17.29■□□□□ 0.36
C12orf4-204ENST00000535887 MNX1P50219 401 aaPredicted RBP17.24■□□□□ 0.35
C12orf4-204ENST00000535887 PHF12Q96QT6 1004 aa17.21■□□□□ 0.35
C12orf4-204ENST00000535887 PAK3O75914 559 aaPredicted RBP17.09■□□□□ 0.33
C12orf4-204ENST00000535887 NPM1P06748 294 aaKnown RBP eCLIP17.08■□□□□ 0.32
C12orf4-204ENST00000535887 POTEB2H3BUK9 544 aa17.07■□□□□ 0.32
C12orf4-204ENST00000535887 FKBP8Q14318 412 aa17.06■□□□□ 0.32
C12orf4-204ENST00000535887 PROM2Q8N271 834 aa17.04■□□□□ 0.32
C12orf4-204ENST00000535887 PELP1Q8IZL8 1130 aaKnown RBP17.03■□□□□ 0.32
C12orf4-204ENST00000535887 OTUD5Q96G74 571 aa17■□□□□ 0.31
C12orf4-204ENST00000535887 MS4A3Q96HJ5 214 aa16.95■□□□□ 0.3
C12orf4-204ENST00000535887 TSPYL2Q9H2G4 693 aaPredicted RBP16.87■□□□□ 0.29
C12orf4-204ENST00000535887 ASTLQ6HA08 431 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms