RNA–Protein interactions for RNA: ENST00000533957.1

CLNS1A-212, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 4

Gene CLNS1A, Length 369 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-212ENST00000533957 AEBP2Q6ZN18 517 aaPredicted RBP26.75■■□□□ 1.87
CLNS1A-212ENST00000533957 CHIC1Q5VXU3 224 aa25.52■■□□□ 1.68
CLNS1A-212ENST00000533957 SENP3Q9H4L4 574 aaPredicted RBP22.77■■□□□ 1.24
CLNS1A-212ENST00000533957 PHF23Q9BUL5 403 aaPredicted RBP22.54■■□□□ 1.2
CLNS1A-212ENST00000533957 FOXD1Q16676 465 aa21.23■□□□□ 0.99
CLNS1A-212ENST00000533957 PLPPR3Q6T4P5 718 aa20.44■□□□□ 0.86
CLNS1A-212ENST00000533957 PPP6R1Q9UPN7 881 aa19.99■□□□□ 0.79
CLNS1A-212ENST00000533957 ADRA2BP18089 450 aa19.91■□□□□ 0.78
CLNS1A-212ENST00000533957 PIAS4Q8N2W9 510 aaPredicted RBP19.84■□□□□ 0.77
CLNS1A-212ENST00000533957 MSH5O43196 834 aa19.8■□□□□ 0.76
CLNS1A-212ENST00000533957 POTEDQ86YR6 584 aa19.12■□□□□ 0.65
CLNS1A-212ENST00000533957 MAPK8IP2Q13387 824 aaPredicted RBP18.26■□□□□ 0.51
CLNS1A-212ENST00000533957 SCAF1Q9H7N4 1312 aaKnown RBP18.22■□□□□ 0.51
CLNS1A-212ENST00000533957 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.48
CLNS1A-212ENST00000533957 PPP4R3CPQ6ZMV5 832 aa17.95■□□□□ 0.46
CLNS1A-212ENST00000533957 CNKSR2Q8WXI2 1034 aa17.57■□□□□ 0.4
CLNS1A-212ENST00000533957 HOXD11P31277 338 aaPredicted RBP17.48■□□□□ 0.39
CLNS1A-212ENST00000533957 RNF216Q9NWF9 866 aaPredicted RBP17.38■□□□□ 0.37
CLNS1A-212ENST00000533957 DCAF8L1A6NGE4 600 aa17.33■□□□□ 0.36
CLNS1A-212ENST00000533957 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
CLNS1A-212ENST00000533957 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
CLNS1A-212ENST00000533957 CACNB1Q02641 598 aaPredicted RBP16.93■□□□□ 0.3
CLNS1A-212ENST00000533957 RNF39Q9H2S5 420 aa16.92■□□□□ 0.3
CLNS1A-212ENST00000533957 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
CLNS1A-212ENST00000533957 KCNA4P22459 653 aa16.83■□□□□ 0.28
CLNS1A-212ENST00000533957 C1QBPQ07021 282 aaKnown RBP16.68■□□□□ 0.26
CLNS1A-212ENST00000533957 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLNS1A-212ENST00000533957 U3KPZ7 1027 aaPredicted RBP16.3■□□□□ 0.2
CLNS1A-212ENST00000533957 SLC4A2P04920 1241 aa16.25■□□□□ 0.19
CLNS1A-212ENST00000533957 SPINK5Q9NQ38 1064 aaPredicted RBP16.04■□□□□ 0.16
CLNS1A-212ENST00000533957 CAPN15O75808 1086 aa16■□□□□ 0.15
CLNS1A-212ENST00000533957 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
CLNS1A-212ENST00000533957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.89■□□□□ 0.13
CLNS1A-212ENST00000533957 DSG3P32926 999 aa15.89■□□□□ 0.13
CLNS1A-212ENST00000533957 HNRNPUL2Q1KMD3 747 aaKnown RBP15.89■□□□□ 0.13
CLNS1A-212ENST00000533957 APLP2Q06481 763 aa15.85■□□□□ 0.13
CLNS1A-212ENST00000533957 SAMD1Q6SPF0 538 aaPredicted RBP15.81■□□□□ 0.12
CLNS1A-212ENST00000533957 TRHP20396 242 aaPredicted RBP15.78■□□□□ 0.12
CLNS1A-212ENST00000533957 ZNF219Q9P2Y4 722 aaPredicted RBP15.74■□□□□ 0.11
CLNS1A-212ENST00000533957 MYCNP04198 464 aaPredicted RBP15.73■□□□□ 0.11
CLNS1A-212ENST00000533957 ABCB7O75027 752 aa15.64■□□□□ 0.09
CLNS1A-212ENST00000533957 FOXD4L1Q9NU39 408 aa15.64■□□□□ 0.09
CLNS1A-212ENST00000533957 ZBTB22O15209 634 aa15.47■□□□□ 0.07
CLNS1A-212ENST00000533957 POLA2Q14181 598 aa15.41■□□□□ 0.06
CLNS1A-212ENST00000533957 ATF5Q9Y2D1 282 aaPredicted RBP15.4■□□□□ 0.06
CLNS1A-212ENST00000533957 ATXN8OSP0DMR3 200 aa15.17■□□□□ 0.02
CLNS1A-212ENST00000533957 RBM42Q9BTD8 480 aaKnown RBP15.13■□□□□ 0.01
CLNS1A-212ENST00000533957 ZBTB12Q9Y330 459 aaPredicted RBP15.06■□□□□ 0
CLNS1A-212ENST00000533957 POTEHQ6S545 545 aa15.01□□□□□ -0.01
CLNS1A-212ENST00000533957 CSRNP3Q8WYN3 585 aa14.89□□□□□ -0.03
CLNS1A-212ENST00000533957 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
CLNS1A-212ENST00000533957 AKT1S1Q96B36 256 aa14.83□□□□□ -0.04
CLNS1A-212ENST00000533957 CHRDL2Q6WN34 429 aa14.77□□□□□ -0.05
CLNS1A-212ENST00000533957 FBLN2P98095 1184 aa14.76□□□□□ -0.05
CLNS1A-212ENST00000533957 EHMT2Q96KQ7 1210 aa14.73□□□□□ -0.05
CLNS1A-212ENST00000533957 REM2Q8IYK8 340 aaPredicted RBP14.7□□□□□ -0.06
CLNS1A-212ENST00000533957 MKRN4PQ13434 485 aaPredicted RBP14.69□□□□□ -0.06
CLNS1A-212ENST00000533957 SPDYE2BA6NHP3 402 aa14.63□□□□□ -0.07
CLNS1A-212ENST00000533957 SPDYE6P0CI01 402 aa14.63□□□□□ -0.07
CLNS1A-212ENST00000533957 SPDYE2Q495Y8 402 aa14.63□□□□□ -0.07
CLNS1A-212ENST00000533957 PITPNM1O00562 1244 aa14.52□□□□□ -0.09
CLNS1A-212ENST00000533957 ZNF692Q9BU19 519 aaPredicted RBP14.49□□□□□ -0.09
CLNS1A-212ENST00000533957 PIP4P2Q8N4L2 257 aa14.45□□□□□ -0.1
CLNS1A-212ENST00000533957 SSUH2Q9Y2M2 353 aa14.44□□□□□ -0.1
CLNS1A-212ENST00000533957 FXR2P51116 673 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLNS1A-212ENST00000533957 SPDYE1Q8NFV5 336 aaPredicted RBP14.34□□□□□ -0.11
CLNS1A-212ENST00000533957 CLEC11AQ9Y240 323 aa14.31□□□□□ -0.12
CLNS1A-212ENST00000533957 PABPN1Q86U42 306 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLNS1A-212ENST00000533957 HAX1O00165 279 aa14.17□□□□□ -0.14
CLNS1A-212ENST00000533957 PRKAR2AP13861 404 aaKnown RBP14.16□□□□□ -0.14
CLNS1A-212ENST00000533957 SP7Q8TDD2 431 aaPredicted RBP14.12□□□□□ -0.15
CLNS1A-212ENST00000533957 PRR29P0C7W0 189 aa14.11□□□□□ -0.15
CLNS1A-212ENST00000533957 SPDYE4A6NLX3 237 aa14.05□□□□□ -0.16
CLNS1A-212ENST00000533957 CHADLQ6NUI6 762 aa14.03□□□□□ -0.16
CLNS1A-212ENST00000533957 EVX2Q03828 476 aa14.02□□□□□ -0.17
CLNS1A-212ENST00000533957 C19orf67A6NJJ6 358 aa13.92□□□□□ -0.18
CLNS1A-212ENST00000533957 STAG3Q9UJ98 1225 aa13.91□□□□□ -0.18
CLNS1A-212ENST00000533957 FARP1Q9Y4F1 1045 aaPredicted RBP13.84□□□□□ -0.19
CLNS1A-212ENST00000533957 CREBZFQ9NS37 354 aa13.78□□□□□ -0.2
CLNS1A-212ENST00000533957 PROM2Q8N271 834 aa13.73□□□□□ -0.21
CLNS1A-212ENST00000533957 CD44P16070 742 aaKnown RBP13.71□□□□□ -0.21
CLNS1A-212ENST00000533957 GABBR2O75899 941 aa13.7□□□□□ -0.22
CLNS1A-212ENST00000533957 MNX1P50219 401 aaPredicted RBP13.57□□□□□ -0.24
CLNS1A-212ENST00000533957 ZRANB1Q9UGI0 708 aa13.55□□□□□ -0.24
CLNS1A-212ENST00000533957 NPM1P06748 294 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLNS1A-212ENST00000533957 CLCN6P51797 869 aa13.53□□□□□ -0.24
CLNS1A-212ENST00000533957 ZNF579Q8NAF0 562 aaKnown RBP13.5□□□□□ -0.25
CLNS1A-212ENST00000533957 FKBP8Q14318 412 aa13.47□□□□□ -0.25
CLNS1A-212ENST00000533957 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
CLNS1A-212ENST00000533957 MIER1Q8N108 512 aa13.43□□□□□ -0.26
CLNS1A-212ENST00000533957 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
CLNS1A-212ENST00000533957 PLEKHG5O94827 1062 aa13.36□□□□□ -0.27
CLNS1A-212ENST00000533957 PHF12Q96QT6 1004 aa13.36□□□□□ -0.27
CLNS1A-212ENST00000533957 GALR2O43603 387 aaPredicted RBP13.34□□□□□ -0.27
CLNS1A-212ENST00000533957 DCBLD2Q96PD2 775 aa13.34□□□□□ -0.27
CLNS1A-212ENST00000533957 PLCD3Q8N3E9 789 aa13.3□□□□□ -0.28
CLNS1A-212ENST00000533957 TSPYL2Q9H2G4 693 aaPredicted RBP13.3□□□□□ -0.28
CLNS1A-212ENST00000533957 LHX8Q68G74 356 aa13.27□□□□□ -0.29
CLNS1A-212ENST00000533957 CCDC61Q9Y6R9 512 aa13.22□□□□□ -0.29
CLNS1A-212ENST00000533957 RASEFQ8IZ41 740 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms