RNA–Protein interactions for RNA: ENST00000532347.1

KNL1-209, Transcript of kinetochore scaffold 1, humanhuman

TSL 4

Gene KNL1, Length 564 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNL1-209ENST00000532347 AEBP2Q6ZN18 517 aaPredicted RBP34.2■■■■□ 3.07
KNL1-209ENST00000532347 CHIC1Q5VXU3 224 aa33.79■■■■□ 3
KNL1-209ENST00000532347 PHF23Q9BUL5 403 aaPredicted RBP29.79■■■□□ 2.36
KNL1-209ENST00000532347 SENP3Q9H4L4 574 aaPredicted RBP28.9■■■□□ 2.22
KNL1-209ENST00000532347 PLPPR3Q6T4P5 718 aa27.62■■■□□ 2.01
KNL1-209ENST00000532347 FOXD1Q16676 465 aa26.8■■□□□ 1.88
KNL1-209ENST00000532347 PPP6R1Q9UPN7 881 aa26.16■■□□□ 1.78
KNL1-209ENST00000532347 ADRA2BP18089 450 aa26.15■■□□□ 1.78
KNL1-209ENST00000532347 PIAS4Q8N2W9 510 aaPredicted RBP25.37■■□□□ 1.65
KNL1-209ENST00000532347 MSH5O43196 834 aa24.51■■□□□ 1.51
KNL1-209ENST00000532347 PPP4R3CPQ6ZMV5 832 aa24.4■■□□□ 1.5
KNL1-209ENST00000532347 KCNA4P22459 653 aa24.35■■□□□ 1.49
KNL1-209ENST00000532347 SCAF1Q9H7N4 1312 aaKnown RBP23.86■■□□□ 1.41
KNL1-209ENST00000532347 NCBP3Q53F19 620 aaKnown RBP23.86■■□□□ 1.41
KNL1-209ENST00000532347 POTEDQ86YR6 584 aa23.72■■□□□ 1.39
KNL1-209ENST00000532347 CNKSR2Q8WXI2 1034 aa23.61■■□□□ 1.37
KNL1-209ENST00000532347 MAPK8IP2Q13387 824 aaPredicted RBP23.6■■□□□ 1.37
KNL1-209ENST00000532347 NPM3O75607 178 aaKnown RBP23.55■■□□□ 1.36
KNL1-209ENST00000532347 SLC4A1APQ9BWU0 796 aaKnown RBP23.25■■□□□ 1.31
KNL1-209ENST00000532347 DMRT2Q9Y5R5 561 aa23.15■■□□□ 1.3
KNL1-209ENST00000532347 EHMT2Q96KQ7 1210 aa23.1■■□□□ 1.29
KNL1-209ENST00000532347 RNF216Q9NWF9 866 aaPredicted RBP23.04■■□□□ 1.28
KNL1-209ENST00000532347 HOXD11P31277 338 aaPredicted RBP22.84■■□□□ 1.25
KNL1-209ENST00000532347 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
KNL1-209ENST00000532347 CSRNP3Q8WYN3 585 aa22.64■■□□□ 1.21
KNL1-209ENST00000532347 ZBTB22O15209 634 aa22.44■■□□□ 1.18
KNL1-209ENST00000532347 FOXD4L1Q9NU39 408 aa22.26■■□□□ 1.15
KNL1-209ENST00000532347 SLC4A2P04920 1241 aa22.14■■□□□ 1.13
KNL1-209ENST00000532347 DCAF8L1A6NGE4 600 aa22.13■■□□□ 1.13
KNL1-209ENST00000532347 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.082e-7■■■■□ 21.9
KNL1-209ENST00000532347 MYCNP04198 464 aaPredicted RBP21.73■■□□□ 1.07
KNL1-209ENST00000532347 U3KPZ7 1027 aaPredicted RBP21.48■■□□□ 1.03
KNL1-209ENST00000532347 ATXN8OSP0DMR3 200 aa21.43■■□□□ 1.02
KNL1-209ENST00000532347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.31■■□□□ 1
KNL1-209ENST00000532347 HNRNPUL2Q1KMD3 747 aaKnown RBP21.31■■□□□ 1
KNL1-209ENST00000532347 SAMD1Q6SPF0 538 aaPredicted RBP21.27■■□□□ 1
KNL1-209ENST00000532347 ATF5Q9Y2D1 282 aaPredicted RBP21.16■□□□□ 0.98
KNL1-209ENST00000532347 RNF39Q9H2S5 420 aa21.07■□□□□ 0.96
KNL1-209ENST00000532347 APLP2Q06481 763 aa20.97■□□□□ 0.95
KNL1-209ENST00000532347 CACNB1Q02641 598 aaPredicted RBP20.84■□□□□ 0.93
KNL1-209ENST00000532347 C1QBPQ07021 282 aaKnown RBP20.83■□□□□ 0.93
KNL1-209ENST00000532347 SPINK5Q9NQ38 1064 aaPredicted RBP20.77■□□□□ 0.92
KNL1-209ENST00000532347 ZNF219Q9P2Y4 722 aaPredicted RBP20.76■□□□□ 0.91
KNL1-209ENST00000532347 TRHP20396 242 aaPredicted RBP20.65■□□□□ 0.9
KNL1-209ENST00000532347 CAPN15O75808 1086 aa20.64■□□□□ 0.89
KNL1-209ENST00000532347 FKBP8Q14318 412 aa20.43■□□□□ 0.86
KNL1-209ENST00000532347 POLA2Q14181 598 aa20.42■□□□□ 0.86
KNL1-209ENST00000532347 ABCB7O75027 752 aa20.3■□□□□ 0.84
KNL1-209ENST00000532347 MKRN4PQ13434 485 aaPredicted RBP20.26■□□□□ 0.83
KNL1-209ENST00000532347 DSG3P32926 999 aa20.2■□□□□ 0.82
KNL1-209ENST00000532347 FBLN2P98095 1184 aa20.19■□□□□ 0.82
KNL1-209ENST00000532347 ZBTB12Q9Y330 459 aaPredicted RBP20.08■□□□□ 0.81
KNL1-209ENST00000532347 SPDYE4A6NLX3 237 aa19.99■□□□□ 0.79
KNL1-209ENST00000532347 PROM2Q8N271 834 aa19.73■□□□□ 0.75
KNL1-209ENST00000532347 OSCARQ8IYS5 282 aa19.72■□□□□ 0.75
KNL1-209ENST00000532347 SPDYE2BA6NHP3 402 aa19.59■□□□□ 0.73
KNL1-209ENST00000532347 SPDYE6P0CI01 402 aa19.59■□□□□ 0.73
KNL1-209ENST00000532347 SPDYE2Q495Y8 402 aa19.59■□□□□ 0.73
KNL1-209ENST00000532347 ZNF692Q9BU19 519 aaPredicted RBP19.59■□□□□ 0.73
KNL1-209ENST00000532347 FBXO3Q9UK99 471 aa19.56■□□□□ 0.72
KNL1-209ENST00000532347 SSUH2Q9Y2M2 353 aa19.5■□□□□ 0.71
KNL1-209ENST00000532347 PABPN1Q86U42 306 aaKnown RBP eCLIP19.36■□□□□ 0.69
KNL1-209ENST00000532347 RTN4Q9NQC3 1192 aaKnown RBP19.36■□□□□ 0.69
KNL1-209ENST00000532347 AMER1Q5JTC6 1135 aaPredicted RBP19.35■□□□□ 0.69
KNL1-209ENST00000532347 VASPP50552 380 aaPredicted RBP19.3■□□□□ 0.68
KNL1-209ENST00000532347 RBM42Q9BTD8 480 aaKnown RBP19.2■□□□□ 0.66
KNL1-209ENST00000532347 STAG3Q9UJ98 1225 aa19.13■□□□□ 0.65
KNL1-209ENST00000532347 IFNLR1Q8IU57 520 aaPredicted RBP19.09■□□□□ 0.65
KNL1-209ENST00000532347 AKT1S1Q96B36 256 aa19.07■□□□□ 0.64
KNL1-209ENST00000532347 PLCD3Q8N3E9 789 aa18.92■□□□□ 0.62
KNL1-209ENST00000532347 REM2Q8IYK8 340 aaPredicted RBP18.91■□□□□ 0.62
KNL1-209ENST00000532347 MIER1Q8N108 512 aa18.91■□□□□ 0.62
KNL1-209ENST00000532347 SPDYE1Q8NFV5 336 aaPredicted RBP18.9■□□□□ 0.62
KNL1-209ENST00000532347 KLHL34Q8N239 644 aa18.86■□□□□ 0.61
KNL1-209ENST00000532347 CLEC11AQ9Y240 323 aa18.81■□□□□ 0.6
KNL1-209ENST00000532347 SPOCK2Q92563 424 aa18.76■□□□□ 0.59
KNL1-209ENST00000532347 PLEKHG5O94827 1062 aa18.74■□□□□ 0.59
KNL1-209ENST00000532347 PITPNM1O00562 1244 aa18.7■□□□□ 0.58
KNL1-209ENST00000532347 PRR29P0C7W0 189 aa18.7■□□□□ 0.58
KNL1-209ENST00000532347 ZBTB47Q9UFB7 747 aaPredicted RBP18.66■□□□□ 0.58
KNL1-209ENST00000532347 PKD2Q13563 968 aa18.62■□□□□ 0.57
KNL1-209ENST00000532347 POTEHQ6S545 545 aa18.61■□□□□ 0.57
KNL1-209ENST00000532347 CREBZFQ9NS37 354 aa18.58■□□□□ 0.56
KNL1-209ENST00000532347 MNX1P50219 401 aaPredicted RBP18.45■□□□□ 0.54
KNL1-209ENST00000532347 ECM2O94769 699 aaPredicted RBP18.41■□□□□ 0.54
KNL1-209ENST00000532347 CIZ1Q9ULV3 898 aaPredicted RBP18.41■□□□□ 0.54
KNL1-209ENST00000532347 NUBP1P53384 320 aa18.39■□□□□ 0.53
KNL1-209ENST00000532347 CHADLQ6NUI6 762 aa18.33■□□□□ 0.52
KNL1-209ENST00000532347 DCAF8L2P0C7V8 631 aa18.32■□□□□ 0.52
KNL1-209ENST00000532347 GSE1Q14687 1217 aa18.27■□□□□ 0.52
KNL1-209ENST00000532347 CHRDL2Q6WN34 429 aa18.26■□□□□ 0.51
KNL1-209ENST00000532347 NPM1P06748 294 aaKnown RBP eCLIP18.25■□□□□ 0.51
KNL1-209ENST00000532347 FXR2P51116 673 aaKnown RBP eCLIP18.24■□□□□ 0.51
KNL1-209ENST00000532347 DCAF8Q5TAQ9 597 aa18.24■□□□□ 0.51
KNL1-209ENST00000532347 RGL2O15211 777 aa18.22■□□□□ 0.51
KNL1-209ENST00000532347 PRKAR2AP13861 404 aaKnown RBP18.22■□□□□ 0.51
KNL1-209ENST00000532347 RASEFQ8IZ41 740 aa18.22■□□□□ 0.51
KNL1-209ENST00000532347 TRIM41Q8WV44 630 aa18.21■□□□□ 0.51
KNL1-209ENST00000532347 FAM212AQ96EL1 285 aa18.21■□□□□ 0.51
KNL1-209ENST00000532347 FARP1Q9Y4F1 1045 aaPredicted RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms