RNA–Protein interactions for RNA: ENST00000530369.1

USP47-210, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 4

Gene USP47, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-210ENST00000530369 AEBP2Q6ZN18 517 aaPredicted RBP18.61■□□□□ 0.57
USP47-210ENST00000530369 CHIC1Q5VXU3 224 aa17.95■□□□□ 0.46
USP47-210ENST00000530369 SENP3Q9H4L4 574 aaPredicted RBP15.89■□□□□ 0.13
USP47-210ENST00000530369 PHF23Q9BUL5 403 aaPredicted RBP15.66■□□□□ 0.1
USP47-210ENST00000530369 FOXD1Q16676 465 aa14.87□□□□□ -0.03
USP47-210ENST00000530369 PLPPR3Q6T4P5 718 aa14.66□□□□□ -0.06
USP47-210ENST00000530369 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
USP47-210ENST00000530369 MSH5O43196 834 aa14.02□□□□□ -0.17
USP47-210ENST00000530369 ADRA2BP18089 450 aa13.84□□□□□ -0.19
USP47-210ENST00000530369 PPP6R1Q9UPN7 881 aa13.8□□□□□ -0.2
USP47-210ENST00000530369 PIAS4Q8N2W9 510 aaPredicted RBP13.75□□□□□ -0.21
USP47-210ENST00000530369 SCAF1Q9H7N4 1312 aaKnown RBP12.88□□□□□ -0.35
USP47-210ENST00000530369 PPP4R3CPQ6ZMV5 832 aa12.85□□□□□ -0.35
USP47-210ENST00000530369 NCBP3Q53F19 620 aaKnown RBP12.65□□□□□ -0.38
USP47-210ENST00000530369 DMRT2Q9Y5R5 561 aa12.58□□□□□ -0.4
USP47-210ENST00000530369 MAPK8IP2Q13387 824 aaPredicted RBP12.57□□□□□ -0.4
USP47-210ENST00000530369 CNKSR2Q8WXI2 1034 aa12.54□□□□□ -0.4
USP47-210ENST00000530369 KCNA4P22459 653 aa12.5□□□□□ -0.41
USP47-210ENST00000530369 NPM3O75607 178 aaKnown RBP12.31□□□□□ -0.44
USP47-210ENST00000530369 RNF216Q9NWF9 866 aaPredicted RBP12.28□□□□□ -0.44
USP47-210ENST00000530369 HOXD11P31277 338 aaPredicted RBP12.19□□□□□ -0.46
USP47-210ENST00000530369 CACNB1Q02641 598 aaPredicted RBP12.19□□□□□ -0.46
USP47-210ENST00000530369 SLC4A1APQ9BWU0 796 aaKnown RBP12□□□□□ -0.49
USP47-210ENST00000530369 DNAJC5BQ9UF47 199 aa12□□□□□ -0.49
USP47-210ENST00000530369 DCAF8L1A6NGE4 600 aa11.98□□□□□ -0.49
USP47-210ENST00000530369 RNF39Q9H2S5 420 aa11.97□□□□□ -0.49
USP47-210ENST00000530369 C1QBPQ07021 282 aaKnown RBP11.77□□□□□ -0.53
USP47-210ENST00000530369 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP47-210ENST00000530369 EHMT2Q96KQ7 1210 aa11.62□□□□□ -0.55
USP47-210ENST00000530369 FOXD4L1Q9NU39 408 aa11.61□□□□□ -0.55
USP47-210ENST00000530369 SLC4A2P04920 1241 aa11.56□□□□□ -0.56
USP47-210ENST00000530369 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.47□□□□□ -0.57
USP47-210ENST00000530369 MYCNP04198 464 aaPredicted RBP11.47□□□□□ -0.57
USP47-210ENST00000530369 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
USP47-210ENST00000530369 ZBTB22O15209 634 aa11.43□□□□□ -0.58
USP47-210ENST00000530369 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
USP47-210ENST00000530369 APLP2Q06481 763 aa11.4□□□□□ -0.58
USP47-210ENST00000530369 U3KPZ7 1027 aaPredicted RBP11.4□□□□□ -0.58
USP47-210ENST00000530369 SAMD1Q6SPF0 538 aaPredicted RBP11.38□□□□□ -0.59
USP47-210ENST00000530369 ATXN8OSP0DMR3 200 aa11.24□□□□□ -0.61
USP47-210ENST00000530369 CAPN15O75808 1086 aa11.13□□□□□ -0.63
USP47-210ENST00000530369 ZNF219Q9P2Y4 722 aaPredicted RBP11.13□□□□□ -0.63
USP47-210ENST00000530369 POTEHQ6S545 545 aa11.11□□□□□ -0.63
USP47-210ENST00000530369 DSG3P32926 999 aa11.09□□□□□ -0.63
USP47-210ENST00000530369 SPINK5Q9NQ38 1064 aaPredicted RBP11.06□□□□□ -0.64
USP47-210ENST00000530369 TRHP20396 242 aaPredicted RBP11.05□□□□□ -0.64
USP47-210ENST00000530369 ATF5Q9Y2D1 282 aaPredicted RBP10.97□□□□□ -0.65
USP47-210ENST00000530369 POLA2Q14181 598 aa10.85□□□□□ -0.67
USP47-210ENST00000530369 ABCB7O75027 752 aa10.84□□□□□ -0.67
USP47-210ENST00000530369 ZBTB12Q9Y330 459 aaPredicted RBP10.84□□□□□ -0.67
USP47-210ENST00000530369 FBLN2P98095 1184 aa10.76□□□□□ -0.69
USP47-210ENST00000530369 RBM42Q9BTD8 480 aaKnown RBP10.54□□□□□ -0.72
USP47-210ENST00000530369 MKRN4PQ13434 485 aaPredicted RBP10.53□□□□□ -0.72
USP47-210ENST00000530369 OSCARQ8IYS5 282 aa10.48□□□□□ -0.73
USP47-210ENST00000530369 SPDYE2BA6NHP3 402 aa10.46□□□□□ -0.73
USP47-210ENST00000530369 SPDYE6P0CI01 402 aa10.46□□□□□ -0.73
USP47-210ENST00000530369 SPDYE2Q495Y8 402 aa10.46□□□□□ -0.73
USP47-210ENST00000530369 CHRDL2Q6WN34 429 aa10.45□□□□□ -0.74
USP47-210ENST00000530369 SPDYE4A6NLX3 237 aa10.42□□□□□ -0.74
USP47-210ENST00000530369 FKBP8Q14318 412 aa10.41□□□□□ -0.74
USP47-210ENST00000530369 ZNF692Q9BU19 519 aaPredicted RBP10.39□□□□□ -0.75
USP47-210ENST00000530369 AKT1S1Q96B36 256 aa10.32□□□□□ -0.76
USP47-210ENST00000530369 SSUH2Q9Y2M2 353 aa10.31□□□□□ -0.76
USP47-210ENST00000530369 SP7Q8TDD2 431 aaPredicted RBP10.25□□□□□ -0.77
USP47-210ENST00000530369 PABPN1Q86U42 306 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP47-210ENST00000530369 PROM2Q8N271 834 aa10.18□□□□□ -0.78
USP47-210ENST00000530369 SPDYE1Q8NFV5 336 aaPredicted RBP10.17□□□□□ -0.78
USP47-210ENST00000530369 STAG3Q9UJ98 1225 aa10.17□□□□□ -0.78
USP47-210ENST00000530369 FBXO3Q9UK99 471 aa10.17□□□□□ -0.78
USP47-210ENST00000530369 REM2Q8IYK8 340 aaPredicted RBP10.16□□□□□ -0.78
USP47-210ENST00000530369 PIP4P2Q8N4L2 257 aa10.15□□□□□ -0.78
USP47-210ENST00000530369 CLEC11AQ9Y240 323 aa10.08□□□□□ -0.8
USP47-210ENST00000530369 FXR2P51116 673 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP47-210ENST00000530369 PITPNM1O00562 1244 aa10.04□□□□□ -0.8
USP47-210ENST00000530369 PLEKHG5O94827 1062 aa10.01□□□□□ -0.81
USP47-210ENST00000530369 PRR29P0C7W0 189 aa10.01□□□□□ -0.81
USP47-210ENST00000530369 HAX1O00165 279 aa9.99□□□□□ -0.81
USP47-210ENST00000530369 EVX2Q03828 476 aa9.93□□□□□ -0.82
USP47-210ENST00000530369 VASPP50552 380 aaPredicted RBP9.92□□□□□ -0.82
USP47-210ENST00000530369 PLCD3Q8N3E9 789 aa9.92□□□□□ -0.82
USP47-210ENST00000530369 MIER1Q8N108 512 aa9.9□□□□□ -0.82
USP47-210ENST00000530369 ZBTB47Q9UFB7 747 aaPredicted RBP9.9□□□□□ -0.82
USP47-210ENST00000530369 PRKAR2AP13861 404 aaKnown RBP9.81□□□□□ -0.84
USP47-210ENST00000530369 KLHL34Q8N239 644 aa9.81□□□□□ -0.84
USP47-210ENST00000530369 NPM1P06748 294 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP47-210ENST00000530369 CREBZFQ9NS37 354 aa9.78□□□□□ -0.84
USP47-210ENST00000530369 C19orf67A6NJJ6 358 aa9.76□□□□□ -0.85
USP47-210ENST00000530369 CHADLQ6NUI6 762 aa9.74□□□□□ -0.85
USP47-210ENST00000530369 IFNLR1Q8IU57 520 aaPredicted RBP9.71□□□□□ -0.86
USP47-210ENST00000530369 FARP1Q9Y4F1 1045 aaPredicted RBP9.71□□□□□ -0.86
USP47-210ENST00000530369 SPOCK2Q92563 424 aa9.7□□□□□ -0.86
USP47-210ENST00000530369 GABBR2O75899 941 aa9.67□□□□□ -0.86
USP47-210ENST00000530369 PAK3O75914 559 aaPredicted RBP9.66□□□□□ -0.86
USP47-210ENST00000530369 MNX1P50219 401 aaPredicted RBP9.65□□□□□ -0.86
USP47-210ENST00000530369 FAM212AQ96EL1 285 aa9.63□□□□□ -0.87
USP47-210ENST00000530369 GSE1Q14687 1217 aa9.6□□□□□ -0.87
USP47-210ENST00000530369 LHX8Q68G74 356 aa9.6□□□□□ -0.87
USP47-210ENST00000530369 AMER1Q5JTC6 1135 aaPredicted RBP9.59□□□□□ -0.87
USP47-210ENST00000530369 NUBP1P53384 320 aa9.57□□□□□ -0.88
USP47-210ENST00000530369 CD44P16070 742 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms