RNA–Protein interactions for RNA: ENST00000530309.1

CASP4-208, Transcript of caspase 4, humanhuman

TSL 2

Gene CASP4, Length 481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-208ENST00000530309 AEBP2Q6ZN18 517 aaPredicted RBP28.04■■■□□ 2.08
CASP4-208ENST00000530309 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
CASP4-208ENST00000530309 PHF23Q9BUL5 403 aaPredicted RBP24.5■■□□□ 1.51
CASP4-208ENST00000530309 SENP3Q9H4L4 574 aaPredicted RBP23.75■■□□□ 1.39
CASP4-208ENST00000530309 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
CASP4-208ENST00000530309 FOXD1Q16676 465 aa21.98■■□□□ 1.11
CASP4-208ENST00000530309 ADRA2BP18089 450 aa21.48■■□□□ 1.03
CASP4-208ENST00000530309 PPP6R1Q9UPN7 881 aa21.48■■□□□ 1.03
CASP4-208ENST00000530309 PIAS4Q8N2W9 510 aaPredicted RBP20.83■□□□□ 0.93
CASP4-208ENST00000530309 MSH5O43196 834 aa20.12■□□□□ 0.81
CASP4-208ENST00000530309 KCNA4P22459 653 aa20.11■□□□□ 0.81
CASP4-208ENST00000530309 PPP4R3CPQ6ZMV5 832 aa20.11■□□□□ 0.81
CASP4-208ENST00000530309 NCBP3Q53F19 620 aaKnown RBP19.73■□□□□ 0.75
CASP4-208ENST00000530309 SCAF1Q9H7N4 1312 aaKnown RBP19.68■□□□□ 0.74
CASP4-208ENST00000530309 CNKSR2Q8WXI2 1034 aa19.46■□□□□ 0.71
CASP4-208ENST00000530309 NPM3O75607 178 aaKnown RBP19.41■□□□□ 0.7
CASP4-208ENST00000530309 MAPK8IP2Q13387 824 aaPredicted RBP19.36■□□□□ 0.69
CASP4-208ENST00000530309 SLC4A1APQ9BWU0 796 aaKnown RBP19.23■□□□□ 0.67
CASP4-208ENST00000530309 EHMT2Q96KQ7 1210 aa19.15■□□□□ 0.66
CASP4-208ENST00000530309 DMRT2Q9Y5R5 561 aa19.02■□□□□ 0.64
CASP4-208ENST00000530309 RNF216Q9NWF9 866 aaPredicted RBP18.98■□□□□ 0.63
CASP4-208ENST00000530309 DNAJC5BQ9UF47 199 aa18.82■□□□□ 0.6
CASP4-208ENST00000530309 HOXD11P31277 338 aaPredicted RBP18.79■□□□□ 0.6
CASP4-208ENST00000530309 POTEDQ86YR6 584 aa18.75■□□□□ 0.59
CASP4-208ENST00000530309 CSRNP3Q8WYN3 585 aa18.75■□□□□ 0.59
CASP4-208ENST00000530309 ZBTB22O15209 634 aa18.51■□□□□ 0.55
CASP4-208ENST00000530309 FOXD4L1Q9NU39 408 aa18.39■□□□□ 0.53
CASP4-208ENST00000530309 SLC4A2P04920 1241 aa18.23■□□□□ 0.51
CASP4-208ENST00000530309 DCAF8L1A6NGE4 600 aa18.16■□□□□ 0.5
CASP4-208ENST00000530309 MYCNP04198 464 aaPredicted RBP17.94■□□□□ 0.46
CASP4-208ENST00000530309 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
CASP4-208ENST00000530309 ATXN8OSP0DMR3 200 aa17.74■□□□□ 0.43
CASP4-208ENST00000530309 U3KPZ7 1027 aaPredicted RBP17.65■□□□□ 0.42
CASP4-208ENST00000530309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
CASP4-208ENST00000530309 HNRNPUL2Q1KMD3 747 aaKnown RBP17.6■□□□□ 0.41
CASP4-208ENST00000530309 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
CASP4-208ENST00000530309 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
CASP4-208ENST00000530309 APLP2Q06481 763 aa17.32■□□□□ 0.36
CASP4-208ENST00000530309 RNF39Q9H2S5 420 aa17.28■□□□□ 0.36
CASP4-208ENST00000530309 C1QBPQ07021 282 aaKnown RBP17.11■□□□□ 0.33
CASP4-208ENST00000530309 ZNF219Q9P2Y4 722 aaPredicted RBP17.11■□□□□ 0.33
CASP4-208ENST00000530309 SPINK5Q9NQ38 1064 aaPredicted RBP17.04■□□□□ 0.32
CASP4-208ENST00000530309 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
CASP4-208ENST00000530309 CAPN15O75808 1086 aa16.96■□□□□ 0.31
CASP4-208ENST00000530309 FKBP8Q14318 412 aa16.91■□□□□ 0.3
CASP4-208ENST00000530309 CACNB1Q02641 598 aaPredicted RBP16.85■□□□□ 0.29
CASP4-208ENST00000530309 POLA2Q14181 598 aa16.81■□□□□ 0.28
CASP4-208ENST00000530309 MKRN4PQ13434 485 aaPredicted RBP16.69■□□□□ 0.26
CASP4-208ENST00000530309 FBLN2P98095 1184 aa16.67■□□□□ 0.26
CASP4-208ENST00000530309 ABCB7O75027 752 aa16.66■□□□□ 0.26
CASP4-208ENST00000530309 DSG3P32926 999 aa16.58■□□□□ 0.24
CASP4-208ENST00000530309 ZBTB12Q9Y330 459 aaPredicted RBP16.57■□□□□ 0.24
CASP4-208ENST00000530309 SPDYE4A6NLX3 237 aa16.52■□□□□ 0.24
CASP4-208ENST00000530309 PROM2Q8N271 834 aa16.32■□□□□ 0.2
CASP4-208ENST00000530309 FBXO3Q9UK99 471 aa16.23■□□□□ 0.19
CASP4-208ENST00000530309 OSCARQ8IYS5 282 aa16.2■□□□□ 0.18
CASP4-208ENST00000530309 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
CASP4-208ENST00000530309 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
CASP4-208ENST00000530309 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
CASP4-208ENST00000530309 AMER1Q5JTC6 1135 aaPredicted RBP16.16■□□□□ 0.18
CASP4-208ENST00000530309 ZNF692Q9BU19 519 aaPredicted RBP16.15■□□□□ 0.18
CASP4-208ENST00000530309 RTN4Q9NQC3 1192 aaKnown RBP16.11■□□□□ 0.17
CASP4-208ENST00000530309 SSUH2Q9Y2M2 353 aa16.06■□□□□ 0.16
CASP4-208ENST00000530309 VASPP50552 380 aaPredicted RBP15.98■□□□□ 0.15
CASP4-208ENST00000530309 PABPN1Q86U42 306 aaKnown RBP eCLIP15.94■□□□□ 0.14
CASP4-208ENST00000530309 STAG3Q9UJ98 1225 aa15.83■□□□□ 0.12
CASP4-208ENST00000530309 IFNLR1Q8IU57 520 aaPredicted RBP15.79■□□□□ 0.12
CASP4-208ENST00000530309 RBM42Q9BTD8 480 aaKnown RBP15.79■□□□□ 0.12
CASP4-208ENST00000530309 AKT1S1Q96B36 256 aa15.69■□□□□ 0.1
CASP4-208ENST00000530309 PLCD3Q8N3E9 789 aa15.65■□□□□ 0.1
CASP4-208ENST00000530309 MIER1Q8N108 512 aa15.63■□□□□ 0.09
CASP4-208ENST00000530309 KLHL34Q8N239 644 aa15.61■□□□□ 0.09
CASP4-208ENST00000530309 SPDYE1Q8NFV5 336 aaPredicted RBP15.58■□□□□ 0.08
CASP4-208ENST00000530309 REM2Q8IYK8 340 aaPredicted RBP15.54■□□□□ 0.08
CASP4-208ENST00000530309 SPOCK2Q92563 424 aa15.54■□□□□ 0.08
CASP4-208ENST00000530309 PLEKHG5O94827 1062 aa15.52■□□□□ 0.08
CASP4-208ENST00000530309 CLEC11AQ9Y240 323 aa15.47■□□□□ 0.07
CASP4-208ENST00000530309 ZBTB47Q9UFB7 747 aaPredicted RBP15.46■□□□□ 0.07
CASP4-208ENST00000530309 PKD2Q13563 968 aa15.42■□□□□ 0.06
CASP4-208ENST00000530309 PRR29P0C7W0 189 aa15.4■□□□□ 0.06
CASP4-208ENST00000530309 PITPNM1O00562 1244 aa15.35■□□□□ 0.05
CASP4-208ENST00000530309 CREBZFQ9NS37 354 aa15.3■□□□□ 0.04
CASP4-208ENST00000530309 ECM2O94769 699 aaPredicted RBP15.26■□□□□ 0.03
CASP4-208ENST00000530309 SLC24A1O60721 1099 aa15.23■□□□□ 0.03
CASP4-208ENST00000530309 CIZ1Q9ULV3 898 aaPredicted RBP15.22■□□□□ 0.03
CASP4-208ENST00000530309 DCAF8L2P0C7V8 631 aa15.2■□□□□ 0.02
CASP4-208ENST00000530309 MNX1P50219 401 aaPredicted RBP15.2■□□□□ 0.02
CASP4-208ENST00000530309 NUBP1P53384 320 aa15.18■□□□□ 0.02
CASP4-208ENST00000530309 GSE1Q14687 1217 aa15.13■□□□□ 0.01
CASP4-208ENST00000530309 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
CASP4-208ENST00000530309 RGL2O15211 777 aa15.08■□□□□ 0
CASP4-208ENST00000530309 NPM1P06748 294 aaKnown RBP eCLIP15.07■□□□□ 0
CASP4-208ENST00000530309 DCAF8Q5TAQ9 597 aa15.06■□□□□ 0
CASP4-208ENST00000530309 FAM212AQ96EL1 285 aa15.05■□□□□ -0
CASP4-208ENST00000530309 CHADLQ6NUI6 762 aa15.04■□□□□ -0
CASP4-208ENST00000530309 RASEFQ8IZ41 740 aa15.01□□□□□ -0.01
CASP4-208ENST00000530309 FXR2P51116 673 aaKnown RBP eCLIP14.98□□□□□ -0.01
CASP4-208ENST00000530309 PRKAR2AP13861 404 aaKnown RBP14.97□□□□□ -0.01
CASP4-208ENST00000530309 CHRDL2Q6WN34 429 aa14.97□□□□□ -0.01
CASP4-208ENST00000530309 FARP1Q9Y4F1 1045 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms