RNA–Protein interactions for RNA: ENST00000529251.1

TCN1-202, Transcript of transcobalamin 1, humanhuman

TSL 3

Gene TCN1, Length 476 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCN1-202ENST00000529251 AEBP2Q6ZN18 517 aaPredicted RBP22.37■■□□□ 1.17
TCN1-202ENST00000529251 CHIC1Q5VXU3 224 aa21.5■■□□□ 1.03
TCN1-202ENST00000529251 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
TCN1-202ENST00000529251 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
TCN1-202ENST00000529251 FOXD1Q16676 465 aa17.68■□□□□ 0.42
TCN1-202ENST00000529251 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
TCN1-202ENST00000529251 PPP6R1Q9UPN7 881 aa16.78■□□□□ 0.28
TCN1-202ENST00000529251 ADRA2BP18089 450 aa16.72■□□□□ 0.27
TCN1-202ENST00000529251 PIAS4Q8N2W9 510 aaPredicted RBP16.56■□□□□ 0.24
TCN1-202ENST00000529251 MSH5O43196 834 aa16.39■□□□□ 0.21
TCN1-202ENST00000529251 POTEDQ86YR6 584 aa15.51■□□□□ 0.07
TCN1-202ENST00000529251 MAPK8IP2Q13387 824 aaPredicted RBP15.27■□□□□ 0.04
TCN1-202ENST00000529251 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
TCN1-202ENST00000529251 PPP4R3CPQ6ZMV5 832 aa15.2■□□□□ 0.02
TCN1-202ENST00000529251 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
TCN1-202ENST00000529251 CNKSR2Q8WXI2 1034 aa14.84□□□□□ -0.03
TCN1-202ENST00000529251 HOXD11P31277 338 aaPredicted RBP14.69□□□□□ -0.06
TCN1-202ENST00000529251 NCBP3Q53F19 620 aaKnown RBP14.67□□□□□ -0.06
TCN1-202ENST00000529251 RNF216Q9NWF9 866 aaPredicted RBP14.65□□□□□ -0.06
TCN1-202ENST00000529251 NPM3O75607 178 aaKnown RBP14.52□□□□□ -0.09
TCN1-202ENST00000529251 KCNA4P22459 653 aa14.51□□□□□ -0.09
TCN1-202ENST00000529251 DCAF8L1A6NGE4 600 aa14.4□□□□□ -0.1
TCN1-202ENST00000529251 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
TCN1-202ENST00000529251 RNF39Q9H2S5 420 aa14.05□□□□□ -0.16
TCN1-202ENST00000529251 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.93□□□□□ -0.18
TCN1-202ENST00000529251 CACNB1Q02641 598 aaPredicted RBP13.85□□□□□ -0.19
TCN1-202ENST00000529251 C1QBPQ07021 282 aaKnown RBP13.84□□□□□ -0.19
TCN1-202ENST00000529251 SLC4A2P04920 1241 aa13.81□□□□□ -0.2
TCN1-202ENST00000529251 U3KPZ7 1027 aaPredicted RBP13.74□□□□□ -0.21
TCN1-202ENST00000529251 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
TCN1-202ENST00000529251 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
TCN1-202ENST00000529251 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
TCN1-202ENST00000529251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
TCN1-202ENST00000529251 MYCNP04198 464 aaPredicted RBP13.39□□□□□ -0.27
TCN1-202ENST00000529251 HNRNPUL2Q1KMD3 747 aaKnown RBP13.39□□□□□ -0.27
TCN1-202ENST00000529251 ZBTB22O15209 634 aa13.38□□□□□ -0.27
TCN1-202ENST00000529251 CAPN15O75808 1086 aa13.35□□□□□ -0.27
TCN1-202ENST00000529251 SAMD1Q6SPF0 538 aaPredicted RBP13.35□□□□□ -0.27
TCN1-202ENST00000529251 APLP2Q06481 763 aa13.3□□□□□ -0.28
TCN1-202ENST00000529251 DSG3P32926 999 aa13.25□□□□□ -0.29
TCN1-202ENST00000529251 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
TCN1-202ENST00000529251 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
TCN1-202ENST00000529251 ATF5Q9Y2D1 282 aaPredicted RBP13.1□□□□□ -0.31
TCN1-202ENST00000529251 ABCB7O75027 752 aa13.07□□□□□ -0.32
TCN1-202ENST00000529251 CSRNP3Q8WYN3 585 aa13.02□□□□□ -0.33
TCN1-202ENST00000529251 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
TCN1-202ENST00000529251 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.33
TCN1-202ENST00000529251 POLA2Q14181 598 aa12.94□□□□□ -0.34
TCN1-202ENST00000529251 ZBTB12Q9Y330 459 aaPredicted RBP12.69□□□□□ -0.38
TCN1-202ENST00000529251 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
TCN1-202ENST00000529251 OSCARQ8IYS5 282 aa12.54□□□□□ -0.4
TCN1-202ENST00000529251 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
TCN1-202ENST00000529251 FBLN2P98095 1184 aa12.5□□□□□ -0.41
TCN1-202ENST00000529251 AKT1S1Q96B36 256 aa12.39□□□□□ -0.43
TCN1-202ENST00000529251 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
TCN1-202ENST00000529251 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
TCN1-202ENST00000529251 SPDYE2Q495Y8 402 aa12.34□□□□□ -0.43
TCN1-202ENST00000529251 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
TCN1-202ENST00000529251 SSUH2Q9Y2M2 353 aa12.25□□□□□ -0.45
TCN1-202ENST00000529251 CHRDL2Q6WN34 429 aa12.22□□□□□ -0.45
TCN1-202ENST00000529251 ZNF692Q9BU19 519 aaPredicted RBP12.22□□□□□ -0.45
TCN1-202ENST00000529251 POTEHQ6S545 545 aa12.2□□□□□ -0.46
TCN1-202ENST00000529251 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
TCN1-202ENST00000529251 PABPN1Q86U42 306 aaKnown RBP eCLIP12.07□□□□□ -0.48
TCN1-202ENST00000529251 SPDYE4A6NLX3 237 aa12.04□□□□□ -0.48
TCN1-202ENST00000529251 SPDYE1Q8NFV5 336 aaPredicted RBP12.04□□□□□ -0.48
TCN1-202ENST00000529251 PIP4P2Q8N4L2 257 aa12□□□□□ -0.49
TCN1-202ENST00000529251 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
TCN1-202ENST00000529251 CLEC11AQ9Y240 323 aa11.97□□□□□ -0.49
TCN1-202ENST00000529251 PROM2Q8N271 834 aa11.86□□□□□ -0.51
TCN1-202ENST00000529251 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
TCN1-202ENST00000529251 PRKAR2AP13861 404 aaKnown RBP11.81□□□□□ -0.52
TCN1-202ENST00000529251 STAG3Q9UJ98 1225 aa11.78□□□□□ -0.52
TCN1-202ENST00000529251 CHADLQ6NUI6 762 aa11.75□□□□□ -0.53
TCN1-202ENST00000529251 FKBP8Q14318 412 aa11.74□□□□□ -0.53
TCN1-202ENST00000529251 CREBZFQ9NS37 354 aa11.67□□□□□ -0.54
TCN1-202ENST00000529251 HAX1O00165 279 aa11.66□□□□□ -0.54
TCN1-202ENST00000529251 FARP1Q9Y4F1 1045 aaPredicted RBP11.63□□□□□ -0.55
TCN1-202ENST00000529251 EVX2Q03828 476 aa11.61□□□□□ -0.55
TCN1-202ENST00000529251 C19orf67A6NJJ6 358 aa11.6□□□□□ -0.55
TCN1-202ENST00000529251 SP7Q8TDD2 431 aaPredicted RBP11.57□□□□□ -0.56
TCN1-202ENST00000529251 MNX1P50219 401 aaPredicted RBP11.53□□□□□ -0.56
TCN1-202ENST00000529251 CD44P16070 742 aaKnown RBP11.46□□□□□ -0.57
TCN1-202ENST00000529251 MIER1Q8N108 512 aa11.42□□□□□ -0.58
TCN1-202ENST00000529251 NPM1P06748 294 aaKnown RBP eCLIP11.4□□□□□ -0.58
TCN1-202ENST00000529251 FBXO3Q9UK99 471 aa11.39□□□□□ -0.59
TCN1-202ENST00000529251 PLCD3Q8N3E9 789 aa11.35□□□□□ -0.59
TCN1-202ENST00000529251 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
TCN1-202ENST00000529251 GABBR2O75899 941 aa11.33□□□□□ -0.6
TCN1-202ENST00000529251 ZNF579Q8NAF0 562 aaKnown RBP11.33□□□□□ -0.6
TCN1-202ENST00000529251 ZRANB1Q9UGI0 708 aa11.33□□□□□ -0.6
TCN1-202ENST00000529251 VASPP50552 380 aaPredicted RBP11.28□□□□□ -0.6
TCN1-202ENST00000529251 PAK3O75914 559 aaPredicted RBP11.27□□□□□ -0.61
TCN1-202ENST00000529251 RASEFQ8IZ41 740 aa11.25□□□□□ -0.61
TCN1-202ENST00000529251 ZBTB47Q9UFB7 747 aaPredicted RBP11.25□□□□□ -0.61
TCN1-202ENST00000529251 CLCN6P51797 869 aa11.24□□□□□ -0.61
TCN1-202ENST00000529251 PHF12Q96QT6 1004 aa11.23□□□□□ -0.61
TCN1-202ENST00000529251 NUBP1P53384 320 aa11.22□□□□□ -0.61
TCN1-202ENST00000529251 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
TCN1-202ENST00000529251 CCDC61Q9Y6R9 512 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms