RNA–Protein interactions for RNA: ENST00000526527.1

COPB1-205, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 2

Gene COPB1, Length 438 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-205ENST00000526527 AEBP2Q6ZN18 517 aaPredicted RBP22.97■■□□□ 1.27
COPB1-205ENST00000526527 CHIC1Q5VXU3 224 aa21.45■■□□□ 1.02
COPB1-205ENST00000526527 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
COPB1-205ENST00000526527 PHF23Q9BUL5 403 aaPredicted RBP19.36■□□□□ 0.69
COPB1-205ENST00000526527 FOXD1Q16676 465 aa18.37■□□□□ 0.53
COPB1-205ENST00000526527 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
COPB1-205ENST00000526527 MSH5O43196 834 aa17.35■□□□□ 0.37
COPB1-205ENST00000526527 PIAS4Q8N2W9 510 aaPredicted RBP17.05■□□□□ 0.32
COPB1-205ENST00000526527 PLPPR3Q6T4P5 718 aa16.92■□□□□ 0.3
COPB1-205ENST00000526527 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
COPB1-205ENST00000526527 ADRA2BP18089 450 aa16.79■□□□□ 0.28
COPB1-205ENST00000526527 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
COPB1-205ENST00000526527 DMRT2Q9Y5R5 561 aa15.52■□□□□ 0.08
COPB1-205ENST00000526527 SCAF1Q9H7N4 1312 aaKnown RBP15.38■□□□□ 0.05
COPB1-205ENST00000526527 CACNB1Q02641 598 aaPredicted RBP15.14■□□□□ 0.01
COPB1-205ENST00000526527 DCAF8L1A6NGE4 600 aa14.89□□□□□ -0.03
COPB1-205ENST00000526527 HOXD11P31277 338 aaPredicted RBP14.8□□□□□ -0.04
COPB1-205ENST00000526527 PPP4R3CPQ6ZMV5 832 aa14.79□□□□□ -0.04
COPB1-205ENST00000526527 RNF39Q9H2S5 420 aa14.77□□□□□ -0.05
COPB1-205ENST00000526527 CNKSR2Q8WXI2 1034 aa14.61□□□□□ -0.07
COPB1-205ENST00000526527 RNF216Q9NWF9 866 aaPredicted RBP14.58□□□□□ -0.08
COPB1-205ENST00000526527 C1QBPQ07021 282 aaKnown RBP14.54□□□□□ -0.08
COPB1-205ENST00000526527 DNAJC5BQ9UF47 199 aa14.39□□□□□ -0.11
COPB1-205ENST00000526527 NCBP3Q53F19 620 aaKnown RBP14.1□□□□□ -0.15
COPB1-205ENST00000526527 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.1□□□□□ -0.15
COPB1-205ENST00000526527 NPM3O75607 178 aaKnown RBP13.88□□□□□ -0.19
COPB1-205ENST00000526527 POTEHQ6S545 545 aa13.74□□□□□ -0.21
COPB1-205ENST00000526527 U3KPZ7 1027 aaPredicted RBP13.74□□□□□ -0.21
COPB1-205ENST00000526527 DSG3P32926 999 aa13.7□□□□□ -0.22
COPB1-205ENST00000526527 CAPN15O75808 1086 aa13.67□□□□□ -0.22
COPB1-205ENST00000526527 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
COPB1-205ENST00000526527 SLC4A2P04920 1241 aa13.38□□□□□ -0.27
COPB1-205ENST00000526527 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
COPB1-205ENST00000526527 APLP2Q06481 763 aa13.32□□□□□ -0.28
COPB1-205ENST00000526527 ABCB7O75027 752 aa13.3□□□□□ -0.28
COPB1-205ENST00000526527 ZNF219Q9P2Y4 722 aaPredicted RBP13.3□□□□□ -0.28
COPB1-205ENST00000526527 KCNA4P22459 653 aa13.25□□□□□ -0.29
COPB1-205ENST00000526527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.22□□□□□ -0.29
COPB1-205ENST00000526527 HNRNPUL2Q1KMD3 747 aaKnown RBP13.22□□□□□ -0.29
COPB1-205ENST00000526527 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
COPB1-205ENST00000526527 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
COPB1-205ENST00000526527 CHRDL2Q6WN34 429 aa12.94□□□□□ -0.34
COPB1-205ENST00000526527 POLA2Q14181 598 aa12.91□□□□□ -0.34
COPB1-205ENST00000526527 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
COPB1-205ENST00000526527 AKT1S1Q96B36 256 aa12.7□□□□□ -0.38
COPB1-205ENST00000526527 SP7Q8TDD2 431 aaPredicted RBP12.68□□□□□ -0.38
COPB1-205ENST00000526527 ATF5Q9Y2D1 282 aaPredicted RBP12.6□□□□□ -0.39
COPB1-205ENST00000526527 ZBTB12Q9Y330 459 aaPredicted RBP12.59□□□□□ -0.39
COPB1-205ENST00000526527 REM2Q8IYK8 340 aaPredicted RBP12.58□□□□□ -0.4
COPB1-205ENST00000526527 PIP4P2Q8N4L2 257 aa12.55□□□□□ -0.4
COPB1-205ENST00000526527 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
COPB1-205ENST00000526527 OSCARQ8IYS5 282 aa12.47□□□□□ -0.41
COPB1-205ENST00000526527 HAX1O00165 279 aa12.44□□□□□ -0.42
COPB1-205ENST00000526527 FXR2P51116 673 aaKnown RBP eCLIP12.43□□□□□ -0.423e-7■■■■□ 20.6
COPB1-205ENST00000526527 PITPNM1O00562 1244 aa12.42□□□□□ -0.42
COPB1-205ENST00000526527 SLC4A1APQ9BWU0 796 aaKnown RBP12.42□□□□□ -0.42
COPB1-205ENST00000526527 EVX2Q03828 476 aa12.27□□□□□ -0.45
COPB1-205ENST00000526527 SPDYE2BA6NHP3 402 aa12.18□□□□□ -0.46
COPB1-205ENST00000526527 SPDYE6P0CI01 402 aa12.18□□□□□ -0.46
COPB1-205ENST00000526527 SPDYE2Q495Y8 402 aa12.18□□□□□ -0.46
COPB1-205ENST00000526527 ZBTB22O15209 634 aa12.17□□□□□ -0.46
COPB1-205ENST00000526527 ATXN8OSP0DMR3 200 aa12.17□□□□□ -0.46
COPB1-205ENST00000526527 FBLN2P98095 1184 aa12.12□□□□□ -0.47
COPB1-205ENST00000526527 PRKAR2AP13861 404 aaKnown RBP12.11□□□□□ -0.47
COPB1-205ENST00000526527 SPDYE1Q8NFV5 336 aaPredicted RBP12.07□□□□□ -0.48
COPB1-205ENST00000526527 CLEC11AQ9Y240 323 aa12.07□□□□□ -0.48
COPB1-205ENST00000526527 C19orf67A6NJJ6 358 aa12.05□□□□□ -0.48
COPB1-205ENST00000526527 MKRN4PQ13434 485 aaPredicted RBP11.99□□□□□ -0.49
COPB1-205ENST00000526527 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
COPB1-205ENST00000526527 GABBR2O75899 941 aa11.97□□□□□ -0.49
COPB1-205ENST00000526527 SSUH2Q9Y2M2 353 aa11.97□□□□□ -0.49
COPB1-205ENST00000526527 LHX8Q68G74 356 aa11.91□□□□□ -0.5
COPB1-205ENST00000526527 CHADLQ6NUI6 762 aa11.88□□□□□ -0.51
COPB1-205ENST00000526527 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
COPB1-205ENST00000526527 PABPN1Q86U42 306 aaKnown RBP eCLIP11.78□□□□□ -0.52
COPB1-205ENST00000526527 POTEIP0CG38 1075 aa11.71□□□□□ -0.53
COPB1-205ENST00000526527 CD44P16070 742 aaKnown RBP11.69□□□□□ -0.54
COPB1-205ENST00000526527 FARP1Q9Y4F1 1045 aaPredicted RBP11.68□□□□□ -0.54
COPB1-205ENST00000526527 CLCN6P51797 869 aa11.66□□□□□ -0.54
COPB1-205ENST00000526527 DCBLD2Q96PD2 775 aa11.55□□□□□ -0.56
COPB1-205ENST00000526527 ZNF579Q8NAF0 562 aaKnown RBP11.5□□□□□ -0.57
COPB1-205ENST00000526527 ZRANB1Q9UGI0 708 aa11.48□□□□□ -0.57
COPB1-205ENST00000526527 PLSCR2Q9NRY7 297 aa11.45□□□□□ -0.58
COPB1-205ENST00000526527 CREBZFQ9NS37 354 aa11.44□□□□□ -0.58
COPB1-205ENST00000526527 GALR2O43603 387 aaPredicted RBP11.39□□□□□ -0.59
COPB1-205ENST00000526527 STAG3Q9UJ98 1225 aa11.39□□□□□ -0.59
COPB1-205ENST00000526527 OTUD5Q96G74 571 aa11.36□□□□□ -0.59
COPB1-205ENST00000526527 POTEB2H3BUK9 544 aa11.32□□□□□ -0.6
COPB1-205ENST00000526527 PAK3O75914 559 aaPredicted RBP11.28□□□□□ -0.6
COPB1-205ENST00000526527 PHF12Q96QT6 1004 aa11.27□□□□□ -0.61
COPB1-205ENST00000526527 CSRNP3Q8WYN3 585 aa11.26□□□□□ -0.61
COPB1-205ENST00000526527 PELP1Q8IZL8 1130 aaKnown RBP11.23□□□□□ -0.61
COPB1-205ENST00000526527 POTEMA6NI47 508 aa11.21□□□□□ -0.61
COPB1-205ENST00000526527 SPDYE4A6NLX3 237 aa11.21□□□□□ -0.61
COPB1-205ENST00000526527 NPM1P06748 294 aaKnown RBP eCLIP11.21□□□□□ -0.61
COPB1-205ENST00000526527 MNX1P50219 401 aaPredicted RBP11.19□□□□□ -0.62
COPB1-205ENST00000526527 POTEGQ6S5H5 508 aa11.17□□□□□ -0.62
COPB1-205ENST00000526527 ASTLQ6HA08 431 aaPredicted RBP11.13□□□□□ -0.63
COPB1-205ENST00000526527 ATMINO43313 823 aaPredicted RBP11.11□□□□□ -0.63
COPB1-205ENST00000526527 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms