RNA–Protein interactions for RNA: ENST00000526335.1

C11orf54-203, Transcript of chromosome 11 open reading frame 54, humanhuman

TSL 2

Gene C11orf54, Length 1,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf54-203ENST00000526335 AEBP2Q6ZN18 517 aaPredicted RBP35.82■■■■□ 3.32
C11orf54-203ENST00000526335 CHIC1Q5VXU3 224 aa33.48■■■□□ 2.95
C11orf54-203ENST00000526335 SENP3Q9H4L4 574 aaPredicted RBP30.7■■■□□ 2.51
C11orf54-203ENST00000526335 PHF23Q9BUL5 403 aaPredicted RBP30.2■■■□□ 2.43
C11orf54-203ENST00000526335 FOXD1Q16676 465 aa28.73■■■□□ 2.19
C11orf54-203ENST00000526335 POTEDQ86YR6 584 aa28.05■■■□□ 2.08
C11orf54-203ENST00000526335 MSH5O43196 834 aa27.22■■□□□ 1.95
C11orf54-203ENST00000526335 PIAS4Q8N2W9 510 aaPredicted RBP26.67■■□□□ 1.86
C11orf54-203ENST00000526335 PPP6R1Q9UPN7 881 aa26.2■■□□□ 1.78
C11orf54-203ENST00000526335 PLPPR3Q6T4P5 718 aa26.13■■□□□ 1.77
C11orf54-203ENST00000526335 ADRA2BP18089 450 aa26.09■■□□□ 1.77
C11orf54-203ENST00000526335 MAPK8IP2Q13387 824 aaPredicted RBP24.24■■□□□ 1.47
C11orf54-203ENST00000526335 DMRT2Q9Y5R5 561 aa24.19■■□□□ 1.46
C11orf54-203ENST00000526335 CACNB1Q02641 598 aaPredicted RBP23.95■■□□□ 1.42
C11orf54-203ENST00000526335 SCAF1Q9H7N4 1312 aaKnown RBP23.88■■□□□ 1.41
C11orf54-203ENST00000526335 DCAF8L1A6NGE4 600 aa23.4■■□□□ 1.34
C11orf54-203ENST00000526335 RNF39Q9H2S5 420 aa23.13■■□□□ 1.29
C11orf54-203ENST00000526335 HOXD11P31277 338 aaPredicted RBP22.94■■□□□ 1.26
C11orf54-203ENST00000526335 PPP4R3CPQ6ZMV5 832 aa22.8■■□□□ 1.24
C11orf54-203ENST00000526335 C1QBPQ07021 282 aaKnown RBP22.75■■□□□ 1.23
C11orf54-203ENST00000526335 CNKSR2Q8WXI2 1034 aa22.56■■□□□ 1.2
C11orf54-203ENST00000526335 RNF216Q9NWF9 866 aaPredicted RBP22.55■■□□□ 1.2
C11orf54-203ENST00000526335 DNAJC5BQ9UF47 199 aa22.26■■□□□ 1.15
C11orf54-203ENST00000526335 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.97■■□□□ 1.11
C11orf54-203ENST00000526335 POTEHQ6S545 545 aa21.82■■□□□ 1.08
C11orf54-203ENST00000526335 NCBP3Q53F19 620 aaKnown RBP21.68■■□□□ 1.06
C11orf54-203ENST00000526335 CAPN15O75808 1086 aa21.37■■□□□ 1.01
C11orf54-203ENST00000526335 DSG3P32926 999 aa21.37■■□□□ 1.01
C11orf54-203ENST00000526335 U3KPZ7 1027 aaPredicted RBP21.35■■□□□ 1.01
C11orf54-203ENST00000526335 NPM3O75607 178 aaKnown RBP21.34■■□□□ 1.01
C11orf54-203ENST00000526335 SPINK5Q9NQ38 1064 aaPredicted RBP21.33■■□□□ 1
C11orf54-203ENST00000526335 TRHP20396 242 aaPredicted RBP20.84■□□□□ 0.93
C11orf54-203ENST00000526335 ABCB7O75027 752 aa20.81■□□□□ 0.92
C11orf54-203ENST00000526335 ZNF219Q9P2Y4 722 aaPredicted RBP20.69■□□□□ 0.9
C11orf54-203ENST00000526335 APLP2Q06481 763 aa20.68■□□□□ 0.9
C11orf54-203ENST00000526335 SLC4A2P04920 1241 aa20.59■□□□□ 0.89
C11orf54-203ENST00000526335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.45■□□□□ 0.86
C11orf54-203ENST00000526335 HNRNPUL2Q1KMD3 747 aaKnown RBP20.45■□□□□ 0.86
C11orf54-203ENST00000526335 RBM42Q9BTD8 480 aaKnown RBP20.44■□□□□ 0.86
C11orf54-203ENST00000526335 CHRDL2Q6WN34 429 aa20.34■□□□□ 0.85
C11orf54-203ENST00000526335 SAMD1Q6SPF0 538 aaPredicted RBP20.29■□□□□ 0.84
C11orf54-203ENST00000526335 KCNA4P22459 653 aa20.18■□□□□ 0.82
C11orf54-203ENST00000526335 POLA2Q14181 598 aa20.05■□□□□ 0.8
C11orf54-203ENST00000526335 SP7Q8TDD2 431 aaPredicted RBP20.05■□□□□ 0.8
C11orf54-203ENST00000526335 AKT1S1Q96B36 256 aa19.77■□□□□ 0.76
C11orf54-203ENST00000526335 MYCNP04198 464 aaPredicted RBP19.75■□□□□ 0.75
C11orf54-203ENST00000526335 PIP4P2Q8N4L2 257 aa19.67■□□□□ 0.74
C11orf54-203ENST00000526335 HAX1O00165 279 aa19.62■□□□□ 0.73
C11orf54-203ENST00000526335 REM2Q8IYK8 340 aaPredicted RBP19.61■□□□□ 0.73
C11orf54-203ENST00000526335 ZBTB12Q9Y330 459 aaPredicted RBP19.53■□□□□ 0.72
C11orf54-203ENST00000526335 OSCARQ8IYS5 282 aa19.43■□□□□ 0.7
C11orf54-203ENST00000526335 PITPNM1O00562 1244 aa19.41■□□□□ 0.7
C11orf54-203ENST00000526335 FXR2P51116 673 aaKnown RBP eCLIP19.38■□□□□ 0.69
C11orf54-203ENST00000526335 ATF5Q9Y2D1 282 aaPredicted RBP19.38■□□□□ 0.69
C11orf54-203ENST00000526335 EVX2Q03828 476 aa19.25■□□□□ 0.67
C11orf54-203ENST00000526335 FOXD4L1Q9NU39 408 aa19.08■□□□□ 0.65
C11orf54-203ENST00000526335 PRKAR2AP13861 404 aaKnown RBP18.93■□□□□ 0.62
C11orf54-203ENST00000526335 SLC4A1APQ9BWU0 796 aaKnown RBP18.89■□□□□ 0.61
C11orf54-203ENST00000526335 SPDYE2BA6NHP3 402 aa18.84■□□□□ 0.61
C11orf54-203ENST00000526335 SPDYE6P0CI01 402 aa18.84■□□□□ 0.61
C11orf54-203ENST00000526335 SPDYE2Q495Y8 402 aa18.84■□□□□ 0.61
C11orf54-203ENST00000526335 CLEC11AQ9Y240 323 aa18.84■□□□□ 0.61
C11orf54-203ENST00000526335 LHX8Q68G74 356 aa18.81■□□□□ 0.6
C11orf54-203ENST00000526335 C19orf67A6NJJ6 358 aa18.8■□□□□ 0.6
C11orf54-203ENST00000526335 GABBR2O75899 941 aa18.77■□□□□ 0.6
C11orf54-203ENST00000526335 SPDYE1Q8NFV5 336 aaPredicted RBP18.76■□□□□ 0.59
C11orf54-203ENST00000526335 FBLN2P98095 1184 aa18.72■□□□□ 0.59
C11orf54-203ENST00000526335 ATXN8OSP0DMR3 200 aa18.55■□□□□ 0.56
C11orf54-203ENST00000526335 CHADLQ6NUI6 762 aa18.55■□□□□ 0.56
C11orf54-203ENST00000526335 ZNF692Q9BU19 519 aaPredicted RBP18.55■□□□□ 0.56
C11orf54-203ENST00000526335 ZBTB22O15209 634 aa18.5■□□□□ 0.55
C11orf54-203ENST00000526335 SSUH2Q9Y2M2 353 aa18.47■□□□□ 0.55
C11orf54-203ENST00000526335 PLSCR2Q9NRY7 297 aa18.42■□□□□ 0.54
C11orf54-203ENST00000526335 MKRN4PQ13434 485 aaPredicted RBP18.42■□□□□ 0.54
C11orf54-203ENST00000526335 PRR29P0C7W0 189 aa18.37■□□□□ 0.53
C11orf54-203ENST00000526335 POTEIP0CG38 1075 aa18.34■□□□□ 0.53
C11orf54-203ENST00000526335 CD44P16070 742 aaKnown RBP18.28■□□□□ 0.52
C11orf54-203ENST00000526335 PABPN1Q86U42 306 aaKnown RBP eCLIP18.23■□□□□ 0.51
C11orf54-203ENST00000526335 FARP1Q9Y4F1 1045 aaPredicted RBP18.15■□□□□ 0.5
C11orf54-203ENST00000526335 DCBLD2Q96PD2 775 aa18.13■□□□□ 0.49
C11orf54-203ENST00000526335 CLCN6P51797 869 aa18.12■□□□□ 0.49
C11orf54-203ENST00000526335 ZNF579Q8NAF0 562 aaKnown RBP17.9■□□□□ 0.46
C11orf54-203ENST00000526335 ZRANB1Q9UGI0 708 aa17.9■□□□□ 0.46
C11orf54-203ENST00000526335 OTUD5Q96G74 571 aa17.84■□□□□ 0.45
C11orf54-203ENST00000526335 GALR2O43603 387 aaPredicted RBP17.78■□□□□ 0.44
C11orf54-203ENST00000526335 POTEMA6NI47 508 aa17.77■□□□□ 0.43
C11orf54-203ENST00000526335 POTEB2H3BUK9 544 aa17.73■□□□□ 0.43
C11orf54-203ENST00000526335 POTEGQ6S5H5 508 aa17.69■□□□□ 0.42
C11orf54-203ENST00000526335 CREBZFQ9NS37 354 aa17.66■□□□□ 0.42
C11orf54-203ENST00000526335 PAK3O75914 559 aaPredicted RBP17.57■□□□□ 0.4
C11orf54-203ENST00000526335 PHF12Q96QT6 1004 aa17.56■□□□□ 0.4
C11orf54-203ENST00000526335 STAG3Q9UJ98 1225 aa17.52■□□□□ 0.39
C11orf54-203ENST00000526335 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
C11orf54-203ENST00000526335 PCDH10Q9P2E7 1040 aa17.47■□□□□ 0.39
C11orf54-203ENST00000526335 METRNQ9UJH8 293 aa17.4■□□□□ 0.38
C11orf54-203ENST00000526335 NPM1P06748 294 aaKnown RBP eCLIP17.35■□□□□ 0.37
C11orf54-203ENST00000526335 POTEJP0CG39 1038 aa17.32■□□□□ 0.36
C11orf54-203ENST00000526335 C7P10643 843 aa17.31■□□□□ 0.36
C11orf54-203ENST00000526335 SLC39A7Q92504 469 aa17.31■□□□□ 0.36
C11orf54-203ENST00000526335 ASTLQ6HA08 431 aaPredicted RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms