RNA–Protein interactions for RNA: ENST00000525367.1

USP47-206, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 434 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-206ENST00000525367 AEBP2Q6ZN18 517 aaPredicted RBP23.42■■□□□ 1.34
USP47-206ENST00000525367 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
USP47-206ENST00000525367 SENP3Q9H4L4 574 aaPredicted RBP20.01■□□□□ 0.79
USP47-206ENST00000525367 PHF23Q9BUL5 403 aaPredicted RBP19.69■□□□□ 0.74
USP47-206ENST00000525367 FOXD1Q16676 465 aa18.72■□□□□ 0.59
USP47-206ENST00000525367 POTEDQ86YR6 584 aa17.99■□□□□ 0.47
USP47-206ENST00000525367 MSH5O43196 834 aa17.67■□□□□ 0.42
USP47-206ENST00000525367 PIAS4Q8N2W9 510 aaPredicted RBP17.33■□□□□ 0.36
USP47-206ENST00000525367 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
USP47-206ENST00000525367 PPP6R1Q9UPN7 881 aa17.17■□□□□ 0.34
USP47-206ENST00000525367 ADRA2BP18089 450 aa17.05■□□□□ 0.32
USP47-206ENST00000525367 DMRT2Q9Y5R5 561 aa15.83■□□□□ 0.12
USP47-206ENST00000525367 MAPK8IP2Q13387 824 aaPredicted RBP15.8■□□□□ 0.12
USP47-206ENST00000525367 SCAF1Q9H7N4 1312 aaKnown RBP15.59■□□□□ 0.09
USP47-206ENST00000525367 CACNB1Q02641 598 aaPredicted RBP15.38■□□□□ 0.05
USP47-206ENST00000525367 KCNA4P22459 653 aa15.16■□□□□ 0.02
USP47-206ENST00000525367 HOXD11P31277 338 aaPredicted RBP15.09■□□□□ 0.01
USP47-206ENST00000525367 DCAF8L1A6NGE4 600 aa15.07■□□□□ 0
USP47-206ENST00000525367 RNF39Q9H2S5 420 aa15.07■□□□□ 0
USP47-206ENST00000525367 PPP4R3CPQ6ZMV5 832 aa15.02■□□□□ -0
USP47-206ENST00000525367 CNKSR2Q8WXI2 1034 aa14.84□□□□□ -0.03
USP47-206ENST00000525367 RNF216Q9NWF9 866 aaPredicted RBP14.84□□□□□ -0.03
USP47-206ENST00000525367 C1QBPQ07021 282 aaKnown RBP14.81□□□□□ -0.04
USP47-206ENST00000525367 DNAJC5BQ9UF47 199 aa14.7□□□□□ -0.06
USP47-206ENST00000525367 EHMT2Q96KQ7 1210 aa14.6□□□□□ -0.07
USP47-206ENST00000525367 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
USP47-206ENST00000525367 NPM3O75607 178 aaKnown RBP14.5□□□□□ -0.09
USP47-206ENST00000525367 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
USP47-206ENST00000525367 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP47-206ENST00000525367 CSRNP3Q8WYN3 585 aa14.2□□□□□ -0.14
USP47-206ENST00000525367 ZBTB22O15209 634 aa14.02□□□□□ -0.17
USP47-206ENST00000525367 POTEHQ6S545 545 aa14□□□□□ -0.17
USP47-206ENST00000525367 U3KPZ7 1027 aaPredicted RBP14□□□□□ -0.17
USP47-206ENST00000525367 DSG3P32926 999 aa13.95□□□□□ -0.18
USP47-206ENST00000525367 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
USP47-206ENST00000525367 CAPN15O75808 1086 aa13.85□□□□□ -0.19
USP47-206ENST00000525367 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
USP47-206ENST00000525367 SLC4A2P04920 1241 aa13.62□□□□□ -0.23
USP47-206ENST00000525367 TRHP20396 242 aaPredicted RBP13.52□□□□□ -0.25
USP47-206ENST00000525367 APLP2Q06481 763 aa13.52□□□□□ -0.25
USP47-206ENST00000525367 ZNF219Q9P2Y4 722 aaPredicted RBP13.52□□□□□ -0.25
USP47-206ENST00000525367 ABCB7O75027 752 aa13.5□□□□□ -0.25
USP47-206ENST00000525367 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.41□□□□□ -0.26
USP47-206ENST00000525367 HNRNPUL2Q1KMD3 747 aaKnown RBP13.41□□□□□ -0.26
USP47-206ENST00000525367 SAMD1Q6SPF0 538 aaPredicted RBP13.33□□□□□ -0.28
USP47-206ENST00000525367 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
USP47-206ENST00000525367 RBM42Q9BTD8 480 aaKnown RBP13.29□□□□□ -0.28
USP47-206ENST00000525367 CHRDL2Q6WN34 429 aa13.18□□□□□ -0.3
USP47-206ENST00000525367 ATXN8OSP0DMR3 200 aa13.12□□□□□ -0.31
USP47-206ENST00000525367 POLA2Q14181 598 aa13.09□□□□□ -0.31
USP47-206ENST00000525367 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
USP47-206ENST00000525367 SP7Q8TDD2 431 aaPredicted RBP12.93□□□□□ -0.34
USP47-206ENST00000525367 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
USP47-206ENST00000525367 ZBTB12Q9Y330 459 aaPredicted RBP12.81□□□□□ -0.36
USP47-206ENST00000525367 FKBP8Q14318 412 aa12.8□□□□□ -0.36
USP47-206ENST00000525367 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
USP47-206ENST00000525367 PIP4P2Q8N4L2 257 aa12.79□□□□□ -0.36
USP47-206ENST00000525367 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
USP47-206ENST00000525367 PITPNM1O00562 1244 aa12.66□□□□□ -0.38
USP47-206ENST00000525367 FXR2P51116 673 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP47-206ENST00000525367 HAX1O00165 279 aa12.61□□□□□ -0.39
USP47-206ENST00000525367 MKRN4PQ13434 485 aaPredicted RBP12.51□□□□□ -0.41
USP47-206ENST00000525367 EVX2Q03828 476 aa12.49□□□□□ -0.41
USP47-206ENST00000525367 RTN4Q9NQC3 1192 aaKnown RBP12.43□□□□□ -0.42
USP47-206ENST00000525367 SPDYE2BA6NHP3 402 aa12.4□□□□□ -0.42
USP47-206ENST00000525367 SPDYE6P0CI01 402 aa12.4□□□□□ -0.42
USP47-206ENST00000525367 SPDYE2Q495Y8 402 aa12.4□□□□□ -0.42
USP47-206ENST00000525367 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
USP47-206ENST00000525367 FBLN2P98095 1184 aa12.31□□□□□ -0.44
USP47-206ENST00000525367 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
USP47-206ENST00000525367 AMER1Q5JTC6 1135 aaPredicted RBP12.29□□□□□ -0.44
USP47-206ENST00000525367 C19orf67A6NJJ6 358 aa12.27□□□□□ -0.45
USP47-206ENST00000525367 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
USP47-206ENST00000525367 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
USP47-206ENST00000525367 CLEC11AQ9Y240 323 aa12.2□□□□□ -0.46
USP47-206ENST00000525367 PROM2Q8N271 834 aa12.19□□□□□ -0.46
USP47-206ENST00000525367 GABBR2O75899 941 aa12.17□□□□□ -0.46
USP47-206ENST00000525367 ZNF692Q9BU19 519 aaPredicted RBP12.12□□□□□ -0.47
USP47-206ENST00000525367 LHX8Q68G74 356 aa12.09□□□□□ -0.47
USP47-206ENST00000525367 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
USP47-206ENST00000525367 CHADLQ6NUI6 762 aa12.05□□□□□ -0.48
USP47-206ENST00000525367 VASPP50552 380 aaPredicted RBP12.01□□□□□ -0.49
USP47-206ENST00000525367 PRR29P0C7W0 189 aa11.97□□□□□ -0.49
USP47-206ENST00000525367 PABPN1Q86U42 306 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP47-206ENST00000525367 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
USP47-206ENST00000525367 IFNLR1Q8IU57 520 aaPredicted RBP11.93□□□□□ -0.5
USP47-206ENST00000525367 CD44P16070 742 aaKnown RBP11.88□□□□□ -0.51
USP47-206ENST00000525367 FARP1Q9Y4F1 1045 aaPredicted RBP11.86□□□□□ -0.51
USP47-206ENST00000525367 CLCN6P51797 869 aa11.85□□□□□ -0.51
USP47-206ENST00000525367 SLC24A1O60721 1099 aa11.82□□□□□ -0.52
USP47-206ENST00000525367 ZNF579Q8NAF0 562 aaKnown RBP11.73□□□□□ -0.53
USP47-206ENST00000525367 DCBLD2Q96PD2 775 aa11.7□□□□□ -0.54
USP47-206ENST00000525367 PKD2Q13563 968 aa11.69□□□□□ -0.54
USP47-206ENST00000525367 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
USP47-206ENST00000525367 KLHL34Q8N239 644 aa11.68□□□□□ -0.54
USP47-206ENST00000525367 PLCD3Q8N3E9 789 aa11.66□□□□□ -0.54
USP47-206ENST00000525367 MIER1Q8N108 512 aa11.63□□□□□ -0.55
USP47-206ENST00000525367 SPOCK2Q92563 424 aa11.63□□□□□ -0.55
USP47-206ENST00000525367 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
USP47-206ENST00000525367 ZRANB1Q9UGI0 708 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms