RNA–Protein interactions for RNA: ENST00000524204.1

NPM1-212, Transcript of nucleophosmin 1, humanhuman

TSL 2

Gene NPM1, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-212ENST00000524204 AEBP2Q6ZN18 517 aaPredicted RBP33.85■■■■□ 3.01
NPM1-212ENST00000524204 CHIC1Q5VXU3 224 aa31.51■■■□□ 2.63
NPM1-212ENST00000524204 SENP3Q9H4L4 574 aaPredicted RBP28.78■■■□□ 2.2
NPM1-212ENST00000524204 PHF23Q9BUL5 403 aaPredicted RBP28.43■■■□□ 2.14
NPM1-212ENST00000524204 FOXD1Q16676 465 aa27.02■■□□□ 1.92
NPM1-212ENST00000524204 POTEDQ86YR6 584 aa25.8■■□□□ 1.72
NPM1-212ENST00000524204 MSH5O43196 834 aa25.35■■□□□ 1.65
NPM1-212ENST00000524204 PIAS4Q8N2W9 510 aaPredicted RBP25.04■■□□□ 1.6
NPM1-212ENST00000524204 PPP6R1Q9UPN7 881 aa24.92■■□□□ 1.58
NPM1-212ENST00000524204 PLPPR3Q6T4P5 718 aa24.86■■□□□ 1.57
NPM1-212ENST00000524204 ADRA2BP18089 450 aa24.77■■□□□ 1.56
NPM1-212ENST00000524204 MAPK8IP2Q13387 824 aaPredicted RBP22.96■■□□□ 1.27
NPM1-212ENST00000524204 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
NPM1-212ENST00000524204 SCAF1Q9H7N4 1312 aaKnown RBP22.46■■□□□ 1.19
NPM1-212ENST00000524204 CACNB1Q02641 598 aaPredicted RBP22.14■■□□□ 1.13
NPM1-212ENST00000524204 DCAF8L1A6NGE4 600 aa21.87■■□□□ 1.09
NPM1-212ENST00000524204 PPP4R3CPQ6ZMV5 832 aa21.79■■□□□ 1.08
NPM1-212ENST00000524204 HOXD11P31277 338 aaPredicted RBP21.74■■□□□ 1.07
NPM1-212ENST00000524204 RNF39Q9H2S5 420 aa21.66■■□□□ 1.06
NPM1-212ENST00000524204 CNKSR2Q8WXI2 1034 aa21.44■■□□□ 1.02
NPM1-212ENST00000524204 RNF216Q9NWF9 866 aaPredicted RBP21.4■■□□□ 1.02
NPM1-212ENST00000524204 C1QBPQ07021 282 aaKnown RBP21.25■□□□□ 0.99
NPM1-212ENST00000524204 DNAJC5BQ9UF47 199 aa21■□□□□ 0.95
NPM1-212ENST00000524204 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.68■□□□□ 0.97e-19■■□□□ 11.6
NPM1-212ENST00000524204 NCBP3Q53F19 620 aaKnown RBP20.66■□□□□ 0.9
NPM1-212ENST00000524204 NPM3O75607 178 aaKnown RBP20.5■□□□□ 0.87
NPM1-212ENST00000524204 U3KPZ7 1027 aaPredicted RBP20.25■□□□□ 0.83
NPM1-212ENST00000524204 SPINK5Q9NQ38 1064 aaPredicted RBP20.16■□□□□ 0.82
NPM1-212ENST00000524204 DSG3P32926 999 aa20.12■□□□□ 0.81
NPM1-212ENST00000524204 POTEHQ6S545 545 aa20.08■□□□□ 0.81
NPM1-212ENST00000524204 CAPN15O75808 1086 aa20.06■□□□□ 0.8
NPM1-212ENST00000524204 SLC4A2P04920 1241 aa19.77■□□□□ 0.76
NPM1-212ENST00000524204 KCNA4P22459 653 aa19.66■□□□□ 0.74
NPM1-212ENST00000524204 TRHP20396 242 aaPredicted RBP19.63■□□□□ 0.73
NPM1-212ENST00000524204 ABCB7O75027 752 aa19.62■□□□□ 0.73
NPM1-212ENST00000524204 ZNF219Q9P2Y4 722 aaPredicted RBP19.48■□□□□ 0.71
NPM1-212ENST00000524204 APLP2Q06481 763 aa19.4■□□□□ 0.7
NPM1-212ENST00000524204 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.3■□□□□ 0.68
NPM1-212ENST00000524204 HNRNPUL2Q1KMD3 747 aaKnown RBP19.3■□□□□ 0.68
NPM1-212ENST00000524204 SAMD1Q6SPF0 538 aaPredicted RBP19.22■□□□□ 0.67
NPM1-212ENST00000524204 RBM42Q9BTD8 480 aaKnown RBP19.06■□□□□ 0.64
NPM1-212ENST00000524204 POLA2Q14181 598 aa18.99■□□□□ 0.63
NPM1-212ENST00000524204 CHRDL2Q6WN34 429 aa18.97■□□□□ 0.63
NPM1-212ENST00000524204 MYCNP04198 464 aaPredicted RBP18.88■□□□□ 0.61
NPM1-212ENST00000524204 ATF5Q9Y2D1 282 aaPredicted RBP18.67■□□□□ 0.58
NPM1-212ENST00000524204 AKT1S1Q96B36 256 aa18.57■□□□□ 0.56
NPM1-212ENST00000524204 SP7Q8TDD2 431 aaPredicted RBP18.55■□□□□ 0.56
NPM1-212ENST00000524204 REM2Q8IYK8 340 aaPredicted RBP18.46■□□□□ 0.55
NPM1-212ENST00000524204 PIP4P2Q8N4L2 257 aa18.44■□□□□ 0.54
NPM1-212ENST00000524204 FOXD4L1Q9NU39 408 aa18.42■□□□□ 0.54
NPM1-212ENST00000524204 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
NPM1-212ENST00000524204 ZBTB12Q9Y330 459 aaPredicted RBP18.41■□□□□ 0.54
NPM1-212ENST00000524204 SLC4A1APQ9BWU0 796 aaKnown RBP18.36■□□□□ 0.53
NPM1-212ENST00000524204 PITPNM1O00562 1244 aa18.29■□□□□ 0.52
NPM1-212ENST00000524204 FXR2P51116 673 aaKnown RBP eCLIP18.23■□□□□ 0.51
NPM1-212ENST00000524204 HAX1O00165 279 aa18.22■□□□□ 0.51
NPM1-212ENST00000524204 ZBTB22O15209 634 aa18.13■□□□□ 0.49
NPM1-212ENST00000524204 EVX2Q03828 476 aa18.1■□□□□ 0.49
NPM1-212ENST00000524204 SPDYE2BA6NHP3 402 aa17.87■□□□□ 0.45
NPM1-212ENST00000524204 SPDYE6P0CI01 402 aa17.87■□□□□ 0.45
NPM1-212ENST00000524204 SPDYE2Q495Y8 402 aa17.87■□□□□ 0.45
NPM1-212ENST00000524204 ATXN8OSP0DMR3 200 aa17.85■□□□□ 0.45
NPM1-212ENST00000524204 PRKAR2AP13861 404 aaKnown RBP17.79■□□□□ 0.44
NPM1-212ENST00000524204 FBLN2P98095 1184 aa17.77■□□□□ 0.44
NPM1-212ENST00000524204 MKRN4PQ13434 485 aaPredicted RBP17.75■□□□□ 0.43
NPM1-212ENST00000524204 CLEC11AQ9Y240 323 aa17.75■□□□□ 0.43
NPM1-212ENST00000524204 SPDYE1Q8NFV5 336 aaPredicted RBP17.68■□□□□ 0.42
NPM1-212ENST00000524204 C19orf67A6NJJ6 358 aa17.66■□□□□ 0.42
NPM1-212ENST00000524204 SSUH2Q9Y2M2 353 aa17.62■□□□□ 0.41
NPM1-212ENST00000524204 ZNF692Q9BU19 519 aaPredicted RBP17.6■□□□□ 0.41
NPM1-212ENST00000524204 GABBR2O75899 941 aa17.56■□□□□ 0.4
NPM1-212ENST00000524204 CHADLQ6NUI6 762 aa17.54■□□□□ 0.4
NPM1-212ENST00000524204 LHX8Q68G74 356 aa17.4■□□□□ 0.38
NPM1-212ENST00000524204 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.37
NPM1-212ENST00000524204 PRR29P0C7W0 189 aa17.34■□□□□ 0.37
NPM1-212ENST00000524204 POTEIP0CG38 1075 aa17.25■□□□□ 0.35
NPM1-212ENST00000524204 CD44P16070 742 aaKnown RBP17.17■□□□□ 0.34
NPM1-212ENST00000524204 FARP1Q9Y4F1 1045 aaPredicted RBP17.15■□□□□ 0.34
NPM1-212ENST00000524204 CLCN6P51797 869 aa16.91■□□□□ 0.3
NPM1-212ENST00000524204 DCBLD2Q96PD2 775 aa16.89■□□□□ 0.29
NPM1-212ENST00000524204 ZNF579Q8NAF0 562 aaKnown RBP16.87■□□□□ 0.29
NPM1-212ENST00000524204 CREBZFQ9NS37 354 aa16.86■□□□□ 0.29
NPM1-212ENST00000524204 ZRANB1Q9UGI0 708 aa16.86■□□□□ 0.29
NPM1-212ENST00000524204 GALR2O43603 387 aaPredicted RBP16.78■□□□□ 0.28
NPM1-212ENST00000524204 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
NPM1-212ENST00000524204 PLSCR2Q9NRY7 297 aa16.73■□□□□ 0.27
NPM1-212ENST00000524204 POTEB2H3BUK9 544 aa16.7■□□□□ 0.26
NPM1-212ENST00000524204 OTUD5Q96G74 571 aa16.68■□□□□ 0.26
NPM1-212ENST00000524204 STAG3Q9UJ98 1225 aa16.65■□□□□ 0.26
NPM1-212ENST00000524204 PHF12Q96QT6 1004 aa16.62■□□□□ 0.25
NPM1-212ENST00000524204 PELP1Q8IZL8 1130 aaKnown RBP16.56■□□□□ 0.24
NPM1-212ENST00000524204 SPDYE4A6NLX3 237 aa16.54■□□□□ 0.24
NPM1-212ENST00000524204 MNX1P50219 401 aaPredicted RBP16.53■□□□□ 0.24
NPM1-212ENST00000524204 PAK3O75914 559 aaPredicted RBP16.48■□□□□ 0.23
NPM1-212ENST00000524204 POTEMA6NI47 508 aa16.41■□□□□ 0.22
NPM1-212ENST00000524204 NPM1P06748 294 aaKnown RBP eCLIP16.39■□□□□ 0.21
NPM1-212ENST00000524204 POTEJP0CG39 1038 aa16.37■□□□□ 0.21
NPM1-212ENST00000524204 MS4A3Q96HJ5 214 aa16.36■□□□□ 0.21
NPM1-212ENST00000524204 POTEGQ6S5H5 508 aa16.35■□□□□ 0.21
NPM1-212ENST00000524204 ASTLQ6HA08 431 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms