RNA–Protein interactions for RNA: ENST00000523978.1

EFCAB13-213, Transcript of EF-hand calcium binding domain 13, humanhuman

TSL 3

Gene EFCAB13, Length 548 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFCAB13-213ENST00000523978 AEBP2Q6ZN18 517 aaPredicted RBP29.13■■■□□ 2.25
EFCAB13-213ENST00000523978 CHIC1Q5VXU3 224 aa27.87■■■□□ 2.05
EFCAB13-213ENST00000523978 SENP3Q9H4L4 574 aaPredicted RBP24.76■■□□□ 1.55
EFCAB13-213ENST00000523978 PHF23Q9BUL5 403 aaPredicted RBP24.49■■□□□ 1.51
EFCAB13-213ENST00000523978 FOXD1Q16676 465 aa23.08■■□□□ 1.29
EFCAB13-213ENST00000523978 PLPPR3Q6T4P5 718 aa22.37■■□□□ 1.17
EFCAB13-213ENST00000523978 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
EFCAB13-213ENST00000523978 ADRA2BP18089 450 aa21.73■■□□□ 1.07
EFCAB13-213ENST00000523978 PIAS4Q8N2W9 510 aaPredicted RBP21.62■■□□□ 1.05
EFCAB13-213ENST00000523978 MSH5O43196 834 aa21.46■■□□□ 1.03
EFCAB13-213ENST00000523978 POTEDQ86YR6 584 aa20.55■□□□□ 0.88
EFCAB13-213ENST00000523978 MAPK8IP2Q13387 824 aaPredicted RBP19.88■□□□□ 0.77
EFCAB13-213ENST00000523978 SCAF1Q9H7N4 1312 aaKnown RBP19.81■□□□□ 0.76
EFCAB13-213ENST00000523978 DMRT2Q9Y5R5 561 aa19.68■□□□□ 0.74
EFCAB13-213ENST00000523978 PPP4R3CPQ6ZMV5 832 aa19.66■□□□□ 0.74
EFCAB13-213ENST00000523978 CNKSR2Q8WXI2 1034 aa19.21■□□□□ 0.67
EFCAB13-213ENST00000523978 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
EFCAB13-213ENST00000523978 RNF216Q9NWF9 866 aaPredicted RBP18.98■□□□□ 0.63
EFCAB13-213ENST00000523978 NCBP3Q53F19 620 aaKnown RBP18.94■□□□□ 0.62
EFCAB13-213ENST00000523978 DCAF8L1A6NGE4 600 aa18.88■□□□□ 0.61
EFCAB13-213ENST00000523978 NPM3O75607 178 aaKnown RBP18.72■□□□□ 0.59
EFCAB13-213ENST00000523978 KCNA4P22459 653 aa18.6■□□□□ 0.57
EFCAB13-213ENST00000523978 RNF39Q9H2S5 420 aa18.35■□□□□ 0.53
EFCAB13-213ENST00000523978 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
EFCAB13-213ENST00000523978 CACNB1Q02641 598 aaPredicted RBP18.27■□□□□ 0.52
EFCAB13-213ENST00000523978 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.5
EFCAB13-213ENST00000523978 C1QBPQ07021 282 aaKnown RBP18.07■□□□□ 0.48
EFCAB13-213ENST00000523978 U3KPZ7 1027 aaPredicted RBP17.83■□□□□ 0.44
EFCAB13-213ENST00000523978 SLC4A2P04920 1241 aa17.82■□□□□ 0.44
EFCAB13-213ENST00000523978 SLC4A1APQ9BWU0 796 aaKnown RBP17.59■□□□□ 0.41
EFCAB13-213ENST00000523978 SPINK5Q9NQ38 1064 aaPredicted RBP17.5■□□□□ 0.39
EFCAB13-213ENST00000523978 CAPN15O75808 1086 aa17.44■□□□□ 0.38
EFCAB13-213ENST00000523978 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
EFCAB13-213ENST00000523978 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
EFCAB13-213ENST00000523978 APLP2Q06481 763 aa17.29■□□□□ 0.36
EFCAB13-213ENST00000523978 MYCNP04198 464 aaPredicted RBP17.28■□□□□ 0.36
EFCAB13-213ENST00000523978 DSG3P32926 999 aa17.28■□□□□ 0.36
EFCAB13-213ENST00000523978 SAMD1Q6SPF0 538 aaPredicted RBP17.28■□□□□ 0.36
EFCAB13-213ENST00000523978 FOXD4L1Q9NU39 408 aa17.25■□□□□ 0.35
EFCAB13-213ENST00000523978 TRHP20396 242 aaPredicted RBP17.23■□□□□ 0.35
EFCAB13-213ENST00000523978 ZNF219Q9P2Y4 722 aaPredicted RBP17.18■□□□□ 0.34
EFCAB13-213ENST00000523978 ZBTB22O15209 634 aa17.12■□□□□ 0.33
EFCAB13-213ENST00000523978 ABCB7O75027 752 aa17.08■□□□□ 0.32
EFCAB13-213ENST00000523978 ATF5Q9Y2D1 282 aaPredicted RBP16.91■□□□□ 0.3
EFCAB13-213ENST00000523978 POLA2Q14181 598 aa16.81■□□□□ 0.28
EFCAB13-213ENST00000523978 ATXN8OSP0DMR3 200 aa16.66■□□□□ 0.26
EFCAB13-213ENST00000523978 CSRNP3Q8WYN3 585 aa16.54■□□□□ 0.24
EFCAB13-213ENST00000523978 EHMT2Q96KQ7 1210 aa16.49■□□□□ 0.23
EFCAB13-213ENST00000523978 ZBTB12Q9Y330 459 aaPredicted RBP16.46■□□□□ 0.23
EFCAB13-213ENST00000523978 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
EFCAB13-213ENST00000523978 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
EFCAB13-213ENST00000523978 FBLN2P98095 1184 aa16.19■□□□□ 0.18
EFCAB13-213ENST00000523978 MKRN4PQ13434 485 aaPredicted RBP16.14■□□□□ 0.17
EFCAB13-213ENST00000523978 POTEHQ6S545 545 aa16.14■□□□□ 0.17
EFCAB13-213ENST00000523978 AKT1S1Q96B36 256 aa16.13■□□□□ 0.17
EFCAB13-213ENST00000523978 CHRDL2Q6WN34 429 aa16.01■□□□□ 0.15
EFCAB13-213ENST00000523978 REM2Q8IYK8 340 aaPredicted RBP16■□□□□ 0.15
EFCAB13-213ENST00000523978 SPDYE2BA6NHP3 402 aa15.99■□□□□ 0.15
EFCAB13-213ENST00000523978 SPDYE6P0CI01 402 aa15.99■□□□□ 0.15
EFCAB13-213ENST00000523978 SPDYE2Q495Y8 402 aa15.99■□□□□ 0.15
EFCAB13-213ENST00000523978 PITPNM1O00562 1244 aa15.85■□□□□ 0.13
EFCAB13-213ENST00000523978 ZNF692Q9BU19 519 aaPredicted RBP15.84■□□□□ 0.13
EFCAB13-213ENST00000523978 SSUH2Q9Y2M2 353 aa15.82■□□□□ 0.12
EFCAB13-213ENST00000523978 PIP4P2Q8N4L2 257 aa15.7■□□□□ 0.1
EFCAB13-213ENST00000523978 SPDYE1Q8NFV5 336 aaPredicted RBP15.65■□□□□ 0.1
EFCAB13-213ENST00000523978 FXR2P51116 673 aaKnown RBP eCLIP15.64■□□□□ 0.09
EFCAB13-213ENST00000523978 PABPN1Q86U42 306 aaKnown RBP eCLIP15.64■□□□□ 0.09
EFCAB13-213ENST00000523978 CLEC11AQ9Y240 323 aa15.63■□□□□ 0.09
EFCAB13-213ENST00000523978 SPDYE4A6NLX3 237 aa15.48■□□□□ 0.07
EFCAB13-213ENST00000523978 PRKAR2AP13861 404 aaKnown RBP15.43■□□□□ 0.06
EFCAB13-213ENST00000523978 PRR29P0C7W0 189 aa15.39■□□□□ 0.05
EFCAB13-213ENST00000523978 HAX1O00165 279 aa15.33■□□□□ 0.04
EFCAB13-213ENST00000523978 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
EFCAB13-213ENST00000523978 SP7Q8TDD2 431 aaPredicted RBP15.25■□□□□ 0.03
EFCAB13-213ENST00000523978 STAG3Q9UJ98 1225 aa15.21■□□□□ 0.03
EFCAB13-213ENST00000523978 EVX2Q03828 476 aa15.19■□□□□ 0.02
EFCAB13-213ENST00000523978 PROM2Q8N271 834 aa15.15■□□□□ 0.02
EFCAB13-213ENST00000523978 C19orf67A6NJJ6 358 aa15.13■□□□□ 0.01
EFCAB13-213ENST00000523978 CREBZFQ9NS37 354 aa15.1■□□□□ 0.01
EFCAB13-213ENST00000523978 FARP1Q9Y4F1 1045 aaPredicted RBP15.1■□□□□ 0.01
EFCAB13-213ENST00000523978 FKBP8Q14318 412 aa14.99□□□□□ -0.01
EFCAB13-213ENST00000523978 CD44P16070 742 aaKnown RBP14.95□□□□□ -0.02
EFCAB13-213ENST00000523978 MNX1P50219 401 aaPredicted RBP14.86□□□□□ -0.03
EFCAB13-213ENST00000523978 GABBR2O75899 941 aa14.84□□□□□ -0.03
EFCAB13-213ENST00000523978 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
EFCAB13-213ENST00000523978 ZRANB1Q9UGI0 708 aa14.78□□□□□ -0.04
EFCAB13-213ENST00000523978 MIER1Q8N108 512 aa14.73□□□□□ -0.05
EFCAB13-213ENST00000523978 ZNF579Q8NAF0 562 aaKnown RBP14.73□□□□□ -0.05
EFCAB13-213ENST00000523978 PAK3O75914 559 aaPredicted RBP14.68□□□□□ -0.06
EFCAB13-213ENST00000523978 PLEKHG5O94827 1062 aa14.66□□□□□ -0.06
EFCAB13-213ENST00000523978 PLCD3Q8N3E9 789 aa14.65□□□□□ -0.06
EFCAB13-213ENST00000523978 CLCN6P51797 869 aa14.63□□□□□ -0.07
EFCAB13-213ENST00000523978 PHF12Q96QT6 1004 aa14.63□□□□□ -0.07
EFCAB13-213ENST00000523978 GALR2O43603 387 aaPredicted RBP14.56□□□□□ -0.08
EFCAB13-213ENST00000523978 TSPYL2Q9H2G4 693 aaPredicted RBP14.56□□□□□ -0.08
EFCAB13-213ENST00000523978 POTEIP0CG38 1075 aa14.55□□□□□ -0.08
EFCAB13-213ENST00000523978 FBXO3Q9UK99 471 aa14.55□□□□□ -0.08
EFCAB13-213ENST00000523978 RASEFQ8IZ41 740 aa14.52□□□□□ -0.09
EFCAB13-213ENST00000523978 ZBTB47Q9UFB7 747 aaPredicted RBP14.49□□□□□ -0.09
EFCAB13-213ENST00000523978 CCDC61Q9Y6R9 512 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms