RNA–Protein interactions for RNA: ENST00000523896.1

PCM1-220, Transcript of pericentriolar material 1, humanhuman

TSL 2

Gene PCM1, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-220ENST00000523896 AEBP2Q6ZN18 517 aaPredicted RBP21.27■■□□□ 1
PCM1-220ENST00000523896 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.89
PCM1-220ENST00000523896 SENP3Q9H4L4 574 aaPredicted RBP18.28■□□□□ 0.52
PCM1-220ENST00000523896 PHF23Q9BUL5 403 aaPredicted RBP18.01■□□□□ 0.47
PCM1-220ENST00000523896 FOXD1Q16676 465 aa16.88■□□□□ 0.29
PCM1-220ENST00000523896 PLPPR3Q6T4P5 718 aa16.65■□□□□ 0.26
PCM1-220ENST00000523896 ADRA2BP18089 450 aa15.98■□□□□ 0.15
PCM1-220ENST00000523896 PPP6R1Q9UPN7 881 aa15.96■□□□□ 0.15
PCM1-220ENST00000523896 PIAS4Q8N2W9 510 aaPredicted RBP15.95■□□□□ 0.14
PCM1-220ENST00000523896 POTEDQ86YR6 584 aa15.94■□□□□ 0.14
PCM1-220ENST00000523896 MSH5O43196 834 aa15.82■□□□□ 0.12
PCM1-220ENST00000523896 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
PCM1-220ENST00000523896 PPP4R3CPQ6ZMV5 832 aa14.59□□□□□ -0.07
PCM1-220ENST00000523896 MAPK8IP2Q13387 824 aaPredicted RBP14.56□□□□□ -0.08
PCM1-220ENST00000523896 DMRT2Q9Y5R5 561 aa14.48□□□□□ -0.09
PCM1-220ENST00000523896 CNKSR2Q8WXI2 1034 aa14.28□□□□□ -0.12
PCM1-220ENST00000523896 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
PCM1-220ENST00000523896 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
PCM1-220ENST00000523896 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
PCM1-220ENST00000523896 DCAF8L1A6NGE4 600 aa14□□□□□ -0.17
PCM1-220ENST00000523896 NPM3O75607 178 aaKnown RBP13.88□□□□□ -0.19
PCM1-220ENST00000523896 KCNA4P22459 653 aa13.87□□□□□ -0.19
PCM1-220ENST00000523896 DNAJC5BQ9UF47 199 aa13.53□□□□□ -0.24
PCM1-220ENST00000523896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.5□□□□□ -0.252e-9■■■□□ 18.1
PCM1-220ENST00000523896 RNF39Q9H2S5 420 aa13.44□□□□□ -0.26
PCM1-220ENST00000523896 CACNB1Q02641 598 aaPredicted RBP13.41□□□□□ -0.26
PCM1-220ENST00000523896 C1QBPQ07021 282 aaKnown RBP13.33□□□□□ -0.28
PCM1-220ENST00000523896 SLC4A1APQ9BWU0 796 aaKnown RBP13.24□□□□□ -0.29
PCM1-220ENST00000523896 SLC4A2P04920 1241 aa13.13□□□□□ -0.31
PCM1-220ENST00000523896 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
PCM1-220ENST00000523896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
PCM1-220ENST00000523896 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
PCM1-220ENST00000523896 APLP2Q06481 763 aa13.02□□□□□ -0.33
PCM1-220ENST00000523896 CAPN15O75808 1086 aa12.93□□□□□ -0.34
PCM1-220ENST00000523896 MYCNP04198 464 aaPredicted RBP12.92□□□□□ -0.34
PCM1-220ENST00000523896 SAMD1Q6SPF0 538 aaPredicted RBP12.92□□□□□ -0.34
PCM1-220ENST00000523896 FOXD4L1Q9NU39 408 aa12.92□□□□□ -0.34
PCM1-220ENST00000523896 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
PCM1-220ENST00000523896 ZNF219Q9P2Y4 722 aaPredicted RBP12.79□□□□□ -0.36
PCM1-220ENST00000523896 TRHP20396 242 aaPredicted RBP12.78□□□□□ -0.36
PCM1-220ENST00000523896 DSG3P32926 999 aa12.68□□□□□ -0.38
PCM1-220ENST00000523896 ZBTB22O15209 634 aa12.67□□□□□ -0.38
PCM1-220ENST00000523896 ABCB7O75027 752 aa12.6□□□□□ -0.39
PCM1-220ENST00000523896 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
PCM1-220ENST00000523896 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
PCM1-220ENST00000523896 POLA2Q14181 598 aa12.45□□□□□ -0.42
PCM1-220ENST00000523896 ATF5Q9Y2D1 282 aaPredicted RBP12.45□□□□□ -0.42
PCM1-220ENST00000523896 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
PCM1-220ENST00000523896 POTEHQ6S545 545 aa12.34□□□□□ -0.43
PCM1-220ENST00000523896 ZBTB12Q9Y330 459 aaPredicted RBP12.34□□□□□ -0.43
PCM1-220ENST00000523896 RBM42Q9BTD8 480 aaKnown RBP12.23□□□□□ -0.45
PCM1-220ENST00000523896 FBLN2P98095 1184 aa12.17□□□□□ -0.46
PCM1-220ENST00000523896 OSCARQ8IYS5 282 aa12.05□□□□□ -0.48
PCM1-220ENST00000523896 AKT1S1Q96B36 256 aa11.95□□□□□ -0.5
PCM1-220ENST00000523896 SPDYE2BA6NHP3 402 aa11.92□□□□□ -0.5
PCM1-220ENST00000523896 SPDYE6P0CI01 402 aa11.92□□□□□ -0.5
PCM1-220ENST00000523896 SPDYE2Q495Y8 402 aa11.92□□□□□ -0.5
PCM1-220ENST00000523896 MKRN4PQ13434 485 aaPredicted RBP11.9□□□□□ -0.5
PCM1-220ENST00000523896 ZNF692Q9BU19 519 aaPredicted RBP11.83□□□□□ -0.52
PCM1-220ENST00000523896 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
PCM1-220ENST00000523896 CHRDL2Q6WN34 429 aa11.77□□□□□ -0.53
PCM1-220ENST00000523896 SSUH2Q9Y2M2 353 aa11.72□□□□□ -0.53
PCM1-220ENST00000523896 SPDYE1Q8NFV5 336 aaPredicted RBP11.67□□□□□ -0.54
PCM1-220ENST00000523896 PITPNM1O00562 1244 aa11.66□□□□□ -0.54
PCM1-220ENST00000523896 PABPN1Q86U42 306 aaKnown RBP eCLIP11.64□□□□□ -0.55
PCM1-220ENST00000523896 CLEC11AQ9Y240 323 aa11.63□□□□□ -0.55
PCM1-220ENST00000523896 SPDYE4A6NLX3 237 aa11.61□□□□□ -0.55
PCM1-220ENST00000523896 PIP4P2Q8N4L2 257 aa11.51□□□□□ -0.57
PCM1-220ENST00000523896 PRR29P0C7W0 189 aa11.48□□□□□ -0.57
PCM1-220ENST00000523896 FXR2P51116 673 aaKnown RBP eCLIP11.48□□□□□ -0.574e-7■■■□□ 18.2
PCM1-220ENST00000523896 STAG3Q9UJ98 1225 aa11.47□□□□□ -0.57
PCM1-220ENST00000523896 PRKAR2AP13861 404 aaKnown RBP11.41□□□□□ -0.58
PCM1-220ENST00000523896 FKBP8Q14318 412 aa11.33□□□□□ -0.6
PCM1-220ENST00000523896 HAX1O00165 279 aa11.31□□□□□ -0.6
PCM1-220ENST00000523896 CHADLQ6NUI6 762 aa11.3□□□□□ -0.6
PCM1-220ENST00000523896 PROM2Q8N271 834 aa11.27□□□□□ -0.61
PCM1-220ENST00000523896 SP7Q8TDD2 431 aaPredicted RBP11.25□□□□□ -0.61
PCM1-220ENST00000523896 PLEKHG5O94827 1062 aa11.18□□□□□ -0.62
PCM1-220ENST00000523896 FARP1Q9Y4F1 1045 aaPredicted RBP11.18□□□□□ -0.62
PCM1-220ENST00000523896 CREBZFQ9NS37 354 aa11.16□□□□□ -0.62
PCM1-220ENST00000523896 C19orf67A6NJJ6 358 aa11.11□□□□□ -0.63
PCM1-220ENST00000523896 NPM1P06748 294 aaKnown RBP eCLIP11.11□□□□□ -0.63
PCM1-220ENST00000523896 MIER1Q8N108 512 aa11.09□□□□□ -0.63
PCM1-220ENST00000523896 FBXO3Q9UK99 471 aa11.09□□□□□ -0.63
PCM1-220ENST00000523896 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
PCM1-220ENST00000523896 PLCD3Q8N3E9 789 aa11.07□□□□□ -0.64
PCM1-220ENST00000523896 PAK3O75914 559 aaPredicted RBP11.05□□□□□ -0.64
PCM1-220ENST00000523896 EVX2Q03828 476 aa11.01□□□□□ -0.65
PCM1-220ENST00000523896 ZBTB47Q9UFB7 747 aaPredicted RBP11□□□□□ -0.65
PCM1-220ENST00000523896 ZRANB1Q9UGI0 708 aa10.97□□□□□ -0.65
PCM1-220ENST00000523896 MNX1P50219 401 aaPredicted RBP10.95□□□□□ -0.66
PCM1-220ENST00000523896 CLCN6P51797 869 aa10.92□□□□□ -0.66
PCM1-220ENST00000523896 GABBR2O75899 941 aa10.88□□□□□ -0.67
PCM1-220ENST00000523896 ZNF579Q8NAF0 562 aaKnown RBP10.88□□□□□ -0.67
PCM1-220ENST00000523896 VASPP50552 380 aaPredicted RBP10.86□□□□□ -0.67
PCM1-220ENST00000523896 TSPYL2Q9H2G4 693 aaPredicted RBP10.86□□□□□ -0.67
PCM1-220ENST00000523896 KLHL34Q8N239 644 aa10.84□□□□□ -0.67
PCM1-220ENST00000523896 FAM212AQ96EL1 285 aa10.78□□□□□ -0.68
PCM1-220ENST00000523896 PHF12Q96QT6 1004 aa10.78□□□□□ -0.68
PCM1-220ENST00000523896 RASEFQ8IZ41 740 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms