RNA–Protein interactions for RNA: ENST00000523298.5

CTNNA1-238, Transcript of catenin alpha 1, human

TSL 2

Gene CTNNA1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-238	ENST00000523298	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.28	■■□□□ 1.16
CTNNA1-238	ENST00000523298	CHIC1	Q5VXU3	224 aa		21.9	■■□□□ 1.1
CTNNA1-238	ENST00000523298	PHF23	Q9BUL5	403 aa	Predicted RBP	19.44	■□□□□ 0.7
CTNNA1-238	ENST00000523298	SENP3	Q9H4L4	574 aa	Predicted RBP	18.6	■□□□□ 0.57
CTNNA1-238	ENST00000523298	PLPPR3	Q6T4P5	718 aa		17.82	■□□□□ 0.44
CTNNA1-238	ENST00000523298	FOXD1	Q16676	465 aa		17.39	■□□□□ 0.37
CTNNA1-238	ENST00000523298	PPP6R1	Q9UPN7	881 aa		17.07	■□□□□ 0.32
CTNNA1-238	ENST00000523298	ADRA2B	P18089	450 aa		17.02	■□□□□ 0.32
CTNNA1-238	ENST00000523298	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.38	■□□□□ 0.21
CTNNA1-238	ENST00000523298	KCNA4	P22459	653 aa		15.9	■□□□□ 0.14
CTNNA1-238	ENST00000523298	PPP4R3CP	Q6ZMV5	832 aa		15.83	■□□□□ 0.12
CTNNA1-238	ENST00000523298	MSH5	O43196	834 aa		15.7	■□□□□ 0.1
CTNNA1-238	ENST00000523298	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.39	■□□□□ 0.05
CTNNA1-238	ENST00000523298	NPM3	O75607	178 aa	Known RBP	15.32	■□□□□ 0.04
CTNNA1-238	ENST00000523298	NCBP3	Q53F19	620 aa	Known RBP	15.32	■□□□□ 0.04
CTNNA1-238	ENST00000523298	SCAF1	Q9H7N4	1312 aa	Known RBP	15.26	■□□□□ 0.03
CTNNA1-238	ENST00000523298	CNKSR2	Q8WXI2	1034 aa		15.24	■□□□□ 0.03
CTNNA1-238	ENST00000523298	EHMT2	Q96KQ7	1210 aa		15.08	■□□□□ 0
CTNNA1-238	ENST00000523298	SLC4A1AP	Q9BWU0	796 aa	Known RBP	15.08	■□□□□ 0
CTNNA1-238	ENST00000523298	DMRT2	Q9Y5R5	561 aa		14.96	□□□□□ -0.01
CTNNA1-238	ENST00000523298	RNF216	Q9NWF9	866 aa	Predicted RBP	14.88	□□□□□ -0.03
CTNNA1-238	ENST00000523298	CSRNP3	Q8WYN3	585 aa		14.83	□□□□□ -0.04
CTNNA1-238	ENST00000523298	HOXD11	P31277	338 aa	Predicted RBP	14.79	□□□□□ -0.04
CTNNA1-238	ENST00000523298	ZBTB22	O15209	634 aa		14.73	□□□□□ -0.05
CTNNA1-238	ENST00000523298	DNAJC5B	Q9UF47	199 aa		14.73	□□□□□ -0.05
CTNNA1-238	ENST00000523298	POTED	Q86YR6	584 aa		14.54	□□□□□ -0.08
CTNNA1-238	ENST00000523298	SLC4A2	P04920	1241 aa		14.46	□□□□□ -0.09
CTNNA1-238	ENST00000523298	FOXD4L1	Q9NU39	408 aa		14.42	□□□□□ -0.1
CTNNA1-238	ENST00000523298	DCAF8L1	A6NGE4	600 aa		14.25	□□□□□ -0.13
CTNNA1-238	ENST00000523298	MYCN	P04198	464 aa	Predicted RBP	14.02	□□□□□ -0.17
CTNNA1-238	ENST00000523298	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14	□□□□□ -0.17	9e-8	■□□□□ 9.6
CTNNA1-238	ENST00000523298		U3KPZ7	1027 aa	Predicted RBP	13.96	□□□□□ -0.17
CTNNA1-238	ENST00000523298	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.86	□□□□□ -0.19
CTNNA1-238	ENST00000523298	ATXN8OS	P0DMR3	200 aa		13.81	□□□□□ -0.2
CTNNA1-238	ENST00000523298	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.65	□□□□□ -0.22
CTNNA1-238	ENST00000523298	RNF39	Q9H2S5	420 aa		13.62	□□□□□ -0.23
CTNNA1-238	ENST00000523298	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.61	□□□□□ -0.23
CTNNA1-238	ENST00000523298	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.61	□□□□□ -0.23
CTNNA1-238	ENST00000523298	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.52	□□□□□ -0.25
CTNNA1-238	ENST00000523298	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.43	□□□□□ -0.26
CTNNA1-238	ENST00000523298	C1QBP	Q07021	282 aa	Known RBP	13.36	□□□□□ -0.27
CTNNA1-238	ENST00000523298	TRH	P20396	242 aa	Predicted RBP	13.34	□□□□□ -0.27
CTNNA1-238	ENST00000523298	APLP2	Q06481	763 aa		13.32	□□□□□ -0.28
CTNNA1-238	ENST00000523298	CAPN15	O75808	1086 aa		13.29	□□□□□ -0.28
CTNNA1-238	ENST00000523298	FKBP8	Q14318	412 aa		13.29	□□□□□ -0.28
CTNNA1-238	ENST00000523298	MKRN4P	Q13434	485 aa	Predicted RBP	13.25	□□□□□ -0.29
CTNNA1-238	ENST00000523298	POLA2	Q14181	598 aa		13.21	□□□□□ -0.29
CTNNA1-238	ENST00000523298	ABCB7	O75027	752 aa		13.17	□□□□□ -0.3
CTNNA1-238	ENST00000523298	CACNB1	Q02641	598 aa	Predicted RBP	13.16	□□□□□ -0.3
CTNNA1-238	ENST00000523298	DSG3	P32926	999 aa		13.08	□□□□□ -0.32
CTNNA1-238	ENST00000523298	FBLN2	P98095	1184 aa		12.95	□□□□□ -0.34
CTNNA1-238	ENST00000523298	SPDYE4	A6NLX3	237 aa		12.94	□□□□□ -0.34
CTNNA1-238	ENST00000523298	PROM2	Q8N271	834 aa		12.85	□□□□□ -0.35
CTNNA1-238	ENST00000523298	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.82	□□□□□ -0.36
CTNNA1-238	ENST00000523298	OSCAR	Q8IYS5	282 aa		12.79	□□□□□ -0.36
CTNNA1-238	ENST00000523298	RTN4	Q9NQC3	1192 aa	Known RBP	12.73	□□□□□ -0.37
CTNNA1-238	ENST00000523298	SSUH2	Q9Y2M2	353 aa		12.64	□□□□□ -0.39
CTNNA1-238	ENST00000523298	ZNF692	Q9BU19	519 aa	Predicted RBP	12.63	□□□□□ -0.39
CTNNA1-238	ENST00000523298	SPDYE2B	A6NHP3	402 aa		12.6	□□□□□ -0.39
CTNNA1-238	ENST00000523298	SPDYE6	P0CI01	402 aa		12.6	□□□□□ -0.39
CTNNA1-238	ENST00000523298	SPDYE2	Q495Y8	402 aa		12.6	□□□□□ -0.39
CTNNA1-238	ENST00000523298	FBXO3	Q9UK99	471 aa		12.55	□□□□□ -0.4
CTNNA1-238	ENST00000523298	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.54	□□□□□ -0.4
CTNNA1-238	ENST00000523298	VASP	P50552	380 aa	Predicted RBP	12.53	□□□□□ -0.4
CTNNA1-238	ENST00000523298	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
CTNNA1-238	ENST00000523298	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.47	□□□□□ -0.41
CTNNA1-238	ENST00000523298	STAG3	Q9UJ98	1225 aa		12.28	□□□□□ -0.44
CTNNA1-238	ENST00000523298	AKT1S1	Q96B36	256 aa		12.26	□□□□□ -0.45
CTNNA1-238	ENST00000523298	RBM42	Q9BTD8	480 aa	Known RBP	12.26	□□□□□ -0.45
CTNNA1-238	ENST00000523298	REM2	Q8IYK8	340 aa	Predicted RBP	12.23	□□□□□ -0.45
CTNNA1-238	ENST00000523298	PKD2	Q13563	968 aa		12.19	□□□□□ -0.46
CTNNA1-238	ENST00000523298	MIER1	Q8N108	512 aa		12.19	□□□□□ -0.46
CTNNA1-238	ENST00000523298	PLCD3	Q8N3E9	789 aa		12.18	□□□□□ -0.46
CTNNA1-238	ENST00000523298	KLHL34	Q8N239	644 aa		12.15	□□□□□ -0.46
CTNNA1-238	ENST00000523298	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.13	□□□□□ -0.47
CTNNA1-238	ENST00000523298	SPOCK2	Q92563	424 aa		12.13	□□□□□ -0.47
CTNNA1-238	ENST00000523298	CLEC11A	Q9Y240	323 aa		12.12	□□□□□ -0.47
CTNNA1-238	ENST00000523298	PITPNM1	O00562	1244 aa		12.11	□□□□□ -0.47
CTNNA1-238	ENST00000523298	CREBZF	Q9NS37	354 aa		12.08	□□□□□ -0.48
CTNNA1-238	ENST00000523298	MNX1	P50219	401 aa	Predicted RBP	12.04	□□□□□ -0.48
CTNNA1-238	ENST00000523298	PRR29	P0C7W0	189 aa		12.02	□□□□□ -0.49
CTNNA1-238	ENST00000523298	NUBP1	P53384	320 aa		11.97	□□□□□ -0.49
CTNNA1-238	ENST00000523298	RGL2	O15211	777 aa		11.92	□□□□□ -0.5
CTNNA1-238	ENST00000523298	ECM2	O94769	699 aa	Predicted RBP	11.92	□□□□□ -0.5
CTNNA1-238	ENST00000523298	CHADL	Q6NUI6	762 aa		11.92	□□□□□ -0.5
CTNNA1-238	ENST00000523298	PLEKHG5	O94827	1062 aa		11.91	□□□□□ -0.5
CTNNA1-238	ENST00000523298	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.9	□□□□□ -0.5
CTNNA1-238	ENST00000523298	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.9	□□□□□ -0.5
CTNNA1-238	ENST00000523298	SLC24A1	O60721	1099 aa		11.88	□□□□□ -0.51
CTNNA1-238	ENST00000523298	RASEF	Q8IZ41	740 aa		11.86	□□□□□ -0.51
CTNNA1-238	ENST00000523298	NPM1	P06748	294 aa	Known RBP eCLIP	11.85	□□□□□ -0.51
CTNNA1-238	ENST00000523298	DCAF8L2	P0C7V8	631 aa		11.84	□□□□□ -0.51
CTNNA1-238	ENST00000523298	RNF25	Q96BH1	459 aa	Predicted RBP	11.82	□□□□□ -0.52
CTNNA1-238	ENST00000523298	FXR2	P51116	673 aa	Known RBP eCLIP	11.8	□□□□□ -0.52	1e-6	■■□□□ 12.9
CTNNA1-238	ENST00000523298	DCAF8	Q5TAQ9	597 aa		11.77	□□□□□ -0.53
CTNNA1-238	ENST00000523298	PRKAR2A	P13861	404 aa	Known RBP	11.76	□□□□□ -0.53
CTNNA1-238	ENST00000523298	CHRDL2	Q6WN34	429 aa		11.76	□□□□□ -0.53
CTNNA1-238	ENST00000523298	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.75	□□□□□ -0.53
CTNNA1-238	ENST00000523298	GSE1	Q14687	1217 aa		11.74	□□□□□ -0.53
CTNNA1-238	ENST00000523298	PIP4P2	Q8N4L2	257 aa		11.73	□□□□□ -0.53

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