RNA–Protein interactions for RNA: ENST00000523013.1

CLK4-213, Transcript of CDC like kinase 4, humanhuman

TSL 2

Gene CLK4, Length 735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-213ENST00000523013 AEBP2Q6ZN18 517 aaPredicted RBP26.61■■□□□ 1.85
CLK4-213ENST00000523013 CHIC1Q5VXU3 224 aa25.55■■□□□ 1.68
CLK4-213ENST00000523013 SENP3Q9H4L4 574 aaPredicted RBP22.58■■□□□ 1.21
CLK4-213ENST00000523013 PHF23Q9BUL5 403 aaPredicted RBP22.46■■□□□ 1.19
CLK4-213ENST00000523013 FOXD1Q16676 465 aa21.05■□□□□ 0.96
CLK4-213ENST00000523013 PLPPR3Q6T4P5 718 aa20.53■□□□□ 0.88
CLK4-213ENST00000523013 PPP6R1Q9UPN7 881 aa19.95■□□□□ 0.78
CLK4-213ENST00000523013 ADRA2BP18089 450 aa19.88■□□□□ 0.77
CLK4-213ENST00000523013 PIAS4Q8N2W9 510 aaPredicted RBP19.71■□□□□ 0.75
CLK4-213ENST00000523013 MSH5O43196 834 aa19.52■□□□□ 0.72
CLK4-213ENST00000523013 POTEDQ86YR6 584 aa18.54■□□□□ 0.56
CLK4-213ENST00000523013 MAPK8IP2Q13387 824 aaPredicted RBP18.17■□□□□ 0.5
CLK4-213ENST00000523013 SCAF1Q9H7N4 1312 aaKnown RBP18.13■□□□□ 0.49
CLK4-213ENST00000523013 PPP4R3CPQ6ZMV5 832 aa18.06■□□□□ 0.48
CLK4-213ENST00000523013 DMRT2Q9Y5R5 561 aa17.98■□□□□ 0.47
CLK4-213ENST00000523013 CNKSR2Q8WXI2 1034 aa17.63■□□□□ 0.41
CLK4-213ENST00000523013 HOXD11P31277 338 aaPredicted RBP17.46■□□□□ 0.39
CLK4-213ENST00000523013 NCBP3Q53F19 620 aaKnown RBP17.41■□□□□ 0.38
CLK4-213ENST00000523013 RNF216Q9NWF9 866 aaPredicted RBP17.39■□□□□ 0.37
CLK4-213ENST00000523013 NPM3O75607 178 aaKnown RBP17.22■□□□□ 0.35
CLK4-213ENST00000523013 KCNA4P22459 653 aa17.18■□□□□ 0.34
CLK4-213ENST00000523013 DCAF8L1A6NGE4 600 aa17.17■□□□□ 0.34
CLK4-213ENST00000523013 DNAJC5BQ9UF47 199 aa16.8■□□□□ 0.28
CLK4-213ENST00000523013 RNF39Q9H2S5 420 aa16.73■□□□□ 0.27
CLK4-213ENST00000523013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLK4-213ENST00000523013 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
CLK4-213ENST00000523013 C1QBPQ07021 282 aaKnown RBP16.47■□□□□ 0.23
CLK4-213ENST00000523013 SLC4A2P04920 1241 aa16.38■□□□□ 0.21
CLK4-213ENST00000523013 U3KPZ7 1027 aaPredicted RBP16.32■□□□□ 0.2
CLK4-213ENST00000523013 SLC4A1APQ9BWU0 796 aaKnown RBP16.25■□□□□ 0.19
CLK4-213ENST00000523013 SPINK5Q9NQ38 1064 aaPredicted RBP15.99■□□□□ 0.15
CLK4-213ENST00000523013 MYCNP04198 464 aaPredicted RBP15.9■□□□□ 0.14
CLK4-213ENST00000523013 FOXD4L1Q9NU39 408 aa15.9■□□□□ 0.14
CLK4-213ENST00000523013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.89■□□□□ 0.13
CLK4-213ENST00000523013 CAPN15O75808 1086 aa15.89■□□□□ 0.13
CLK4-213ENST00000523013 HNRNPUL2Q1KMD3 747 aaKnown RBP15.89■□□□□ 0.13
CLK4-213ENST00000523013 ZBTB22O15209 634 aa15.84■□□□□ 0.13
CLK4-213ENST00000523013 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
CLK4-213ENST00000523013 APLP2Q06481 763 aa15.81■□□□□ 0.12
CLK4-213ENST00000523013 DSG3P32926 999 aa15.77■□□□□ 0.12
CLK4-213ENST00000523013 TRHP20396 242 aaPredicted RBP15.73■□□□□ 0.11
CLK4-213ENST00000523013 ZNF219Q9P2Y4 722 aaPredicted RBP15.7■□□□□ 0.1
CLK4-213ENST00000523013 ABCB7O75027 752 aa15.59■□□□□ 0.09
CLK4-213ENST00000523013 ATF5Q9Y2D1 282 aaPredicted RBP15.56■□□□□ 0.08
CLK4-213ENST00000523013 ATXN8OSP0DMR3 200 aa15.39■□□□□ 0.05
CLK4-213ENST00000523013 POLA2Q14181 598 aa15.39■□□□□ 0.05
CLK4-213ENST00000523013 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
CLK4-213ENST00000523013 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
CLK4-213ENST00000523013 ZBTB12Q9Y330 459 aaPredicted RBP15.07■□□□□ 0
CLK4-213ENST00000523013 RBM42Q9BTD8 480 aaKnown RBP14.99□□□□□ -0.01
CLK4-213ENST00000523013 OSCARQ8IYS5 282 aa14.9□□□□□ -0.02
CLK4-213ENST00000523013 MKRN4PQ13434 485 aaPredicted RBP14.85□□□□□ -0.03
CLK4-213ENST00000523013 FBLN2P98095 1184 aa14.84□□□□□ -0.03
CLK4-213ENST00000523013 AKT1S1Q96B36 256 aa14.74□□□□□ -0.05
CLK4-213ENST00000523013 SPDYE2BA6NHP3 402 aa14.66□□□□□ -0.06
CLK4-213ENST00000523013 SPDYE6P0CI01 402 aa14.66□□□□□ -0.06
CLK4-213ENST00000523013 SPDYE2Q495Y8 402 aa14.66□□□□□ -0.06
CLK4-213ENST00000523013 REM2Q8IYK8 340 aaPredicted RBP14.61□□□□□ -0.07
CLK4-213ENST00000523013 POTEHQ6S545 545 aa14.58□□□□□ -0.08
CLK4-213ENST00000523013 CHRDL2Q6WN34 429 aa14.56□□□□□ -0.08
CLK4-213ENST00000523013 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
CLK4-213ENST00000523013 SSUH2Q9Y2M2 353 aa14.53□□□□□ -0.08
CLK4-213ENST00000523013 PITPNM1O00562 1244 aa14.46□□□□□ -0.09
CLK4-213ENST00000523013 PABPN1Q86U42 306 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK4-213ENST00000523013 SPDYE1Q8NFV5 336 aaPredicted RBP14.31□□□□□ -0.12
CLK4-213ENST00000523013 PIP4P2Q8N4L2 257 aa14.3□□□□□ -0.12
CLK4-213ENST00000523013 SPDYE4A6NLX3 237 aa14.27□□□□□ -0.13
CLK4-213ENST00000523013 FXR2P51116 673 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLK4-213ENST00000523013 CLEC11AQ9Y240 323 aa14.26□□□□□ -0.13
CLK4-213ENST00000523013 PRR29P0C7W0 189 aa14.08□□□□□ -0.16
CLK4-213ENST00000523013 PRKAR2AP13861 404 aaKnown RBP14.07□□□□□ -0.16
CLK4-213ENST00000523013 PROM2Q8N271 834 aa14.03□□□□□ -0.16
CLK4-213ENST00000523013 CHADLQ6NUI6 762 aa14□□□□□ -0.17
CLK4-213ENST00000523013 STAG3Q9UJ98 1225 aa13.99□□□□□ -0.17
CLK4-213ENST00000523013 HAX1O00165 279 aa13.92□□□□□ -0.18
CLK4-213ENST00000523013 FKBP8Q14318 412 aa13.89□□□□□ -0.19
CLK4-213ENST00000523013 CREBZFQ9NS37 354 aa13.85□□□□□ -0.19
CLK4-213ENST00000523013 EVX2Q03828 476 aa13.84□□□□□ -0.19
CLK4-213ENST00000523013 SP7Q8TDD2 431 aaPredicted RBP13.81□□□□□ -0.2
CLK4-213ENST00000523013 FARP1Q9Y4F1 1045 aaPredicted RBP13.81□□□□□ -0.2
CLK4-213ENST00000523013 C19orf67A6NJJ6 358 aa13.8□□□□□ -0.2
CLK4-213ENST00000523013 MNX1P50219 401 aaPredicted RBP13.68□□□□□ -0.22
CLK4-213ENST00000523013 CD44P16070 742 aaKnown RBP13.64□□□□□ -0.23
CLK4-213ENST00000523013 NPM1P06748 294 aaKnown RBP eCLIP13.55□□□□□ -0.24
CLK4-213ENST00000523013 MIER1Q8N108 512 aa13.55□□□□□ -0.24
CLK4-213ENST00000523013 GABBR2O75899 941 aa13.51□□□□□ -0.25
CLK4-213ENST00000523013 ZRANB1Q9UGI0 708 aa13.49□□□□□ -0.25
CLK4-213ENST00000523013 PLCD3Q8N3E9 789 aa13.48□□□□□ -0.25
CLK4-213ENST00000523013 FBXO3Q9UK99 471 aa13.48□□□□□ -0.25
CLK4-213ENST00000523013 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
CLK4-213ENST00000523013 ZNF579Q8NAF0 562 aaKnown RBP13.46□□□□□ -0.25
CLK4-213ENST00000523013 PAK3O75914 559 aaPredicted RBP13.41□□□□□ -0.26
CLK4-213ENST00000523013 CLCN6P51797 869 aa13.37□□□□□ -0.27
CLK4-213ENST00000523013 PHF12Q96QT6 1004 aa13.36□□□□□ -0.27
CLK4-213ENST00000523013 VASPP50552 380 aaPredicted RBP13.35□□□□□ -0.27
CLK4-213ENST00000523013 RASEFQ8IZ41 740 aa13.34□□□□□ -0.27
CLK4-213ENST00000523013 TSPYL2Q9H2G4 693 aaPredicted RBP13.34□□□□□ -0.27
CLK4-213ENST00000523013 ZBTB47Q9UFB7 747 aaPredicted RBP13.34□□□□□ -0.27
CLK4-213ENST00000523013 NUBP1P53384 320 aa13.3□□□□□ -0.28
CLK4-213ENST00000523013 CCDC61Q9Y6R9 512 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms