RNA–Protein interactions for RNA: ENST00000521693.1

LAMA4-217, Transcript of laminin subunit alpha 4, humanhuman

TSL 2

Gene LAMA4, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-217ENST00000521693 AEBP2Q6ZN18 517 aaPredicted RBP27.79■■■□□ 2.04
LAMA4-217ENST00000521693 CHIC1Q5VXU3 224 aa26.41■■□□□ 1.82
LAMA4-217ENST00000521693 SENP3Q9H4L4 574 aaPredicted RBP23.77■■□□□ 1.4
LAMA4-217ENST00000521693 PHF23Q9BUL5 403 aaPredicted RBP23.45■■□□□ 1.34
LAMA4-217ENST00000521693 FOXD1Q16676 465 aa22.13■■□□□ 1.13
LAMA4-217ENST00000521693 PLPPR3Q6T4P5 718 aa21.11■□□□□ 0.97
LAMA4-217ENST00000521693 MSH5O43196 834 aa20.76■□□□□ 0.91
LAMA4-217ENST00000521693 PIAS4Q8N2W9 510 aaPredicted RBP20.71■□□□□ 0.91
LAMA4-217ENST00000521693 PPP6R1Q9UPN7 881 aa20.65■□□□□ 0.9
LAMA4-217ENST00000521693 ADRA2BP18089 450 aa20.61■□□□□ 0.89
LAMA4-217ENST00000521693 POTEDQ86YR6 584 aa20.28■□□□□ 0.84
LAMA4-217ENST00000521693 MAPK8IP2Q13387 824 aaPredicted RBP18.93■□□□□ 0.62
LAMA4-217ENST00000521693 SCAF1Q9H7N4 1312 aaKnown RBP18.92■□□□□ 0.62
LAMA4-217ENST00000521693 DMRT2Q9Y5R5 561 aa18.82■□□□□ 0.6
LAMA4-217ENST00000521693 PPP4R3CPQ6ZMV5 832 aa18.49■□□□□ 0.55
LAMA4-217ENST00000521693 CNKSR2Q8WXI2 1034 aa18.16■□□□□ 0.5
LAMA4-217ENST00000521693 HOXD11P31277 338 aaPredicted RBP18.12■□□□□ 0.49
LAMA4-217ENST00000521693 DCAF8L1A6NGE4 600 aa18.11■□□□□ 0.49
LAMA4-217ENST00000521693 RNF216Q9NWF9 866 aaPredicted RBP17.99■□□□□ 0.47
LAMA4-217ENST00000521693 CACNB1Q02641 598 aaPredicted RBP17.84■□□□□ 0.45
LAMA4-217ENST00000521693 NCBP3Q53F19 620 aaKnown RBP17.81■□□□□ 0.44
LAMA4-217ENST00000521693 RNF39Q9H2S5 420 aa17.68■□□□□ 0.42
LAMA4-217ENST00000521693 DNAJC5BQ9UF47 199 aa17.51■□□□□ 0.39
LAMA4-217ENST00000521693 NPM3O75607 178 aaKnown RBP17.5■□□□□ 0.39
LAMA4-217ENST00000521693 C1QBPQ07021 282 aaKnown RBP17.45■□□□□ 0.38
LAMA4-217ENST00000521693 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.31■□□□□ 0.36
LAMA4-217ENST00000521693 KCNA4P22459 653 aa17.14■□□□□ 0.33
LAMA4-217ENST00000521693 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
LAMA4-217ENST00000521693 SLC4A2P04920 1241 aa16.7■□□□□ 0.26
LAMA4-217ENST00000521693 CAPN15O75808 1086 aa16.68■□□□□ 0.26
LAMA4-217ENST00000521693 SPINK5Q9NQ38 1064 aaPredicted RBP16.67■□□□□ 0.26
LAMA4-217ENST00000521693 DSG3P32926 999 aa16.55■□□□□ 0.24
LAMA4-217ENST00000521693 APLP2Q06481 763 aa16.5■□□□□ 0.23
LAMA4-217ENST00000521693 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.47■□□□□ 0.23
LAMA4-217ENST00000521693 HNRNPUL2Q1KMD3 747 aaKnown RBP16.47■□□□□ 0.23
LAMA4-217ENST00000521693 TRHP20396 242 aaPredicted RBP16.4■□□□□ 0.22
LAMA4-217ENST00000521693 ZNF219Q9P2Y4 722 aaPredicted RBP16.38■□□□□ 0.21
LAMA4-217ENST00000521693 SAMD1Q6SPF0 538 aaPredicted RBP16.36■□□□□ 0.21
LAMA4-217ENST00000521693 ABCB7O75027 752 aa16.28■□□□□ 0.2
LAMA4-217ENST00000521693 MYCNP04198 464 aaPredicted RBP16.22■□□□□ 0.19
LAMA4-217ENST00000521693 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
LAMA4-217ENST00000521693 FOXD4L1Q9NU39 408 aa16.03■□□□□ 0.16
LAMA4-217ENST00000521693 POLA2Q14181 598 aa15.95■□□□□ 0.14
LAMA4-217ENST00000521693 POTEHQ6S545 545 aa15.9■□□□□ 0.14
LAMA4-217ENST00000521693 RBM42Q9BTD8 480 aaKnown RBP15.84■□□□□ 0.13
LAMA4-217ENST00000521693 ATF5Q9Y2D1 282 aaPredicted RBP15.8■□□□□ 0.12
LAMA4-217ENST00000521693 ZBTB22O15209 634 aa15.73■□□□□ 0.11
LAMA4-217ENST00000521693 ZBTB12Q9Y330 459 aaPredicted RBP15.64■□□□□ 0.09
LAMA4-217ENST00000521693 ATXN8OSP0DMR3 200 aa15.54■□□□□ 0.08
LAMA4-217ENST00000521693 CHRDL2Q6WN34 429 aa15.48■□□□□ 0.07
LAMA4-217ENST00000521693 AKT1S1Q96B36 256 aa15.45■□□□□ 0.06
LAMA4-217ENST00000521693 OSCARQ8IYS5 282 aa15.42■□□□□ 0.06
LAMA4-217ENST00000521693 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
LAMA4-217ENST00000521693 FBLN2P98095 1184 aa15.25■□□□□ 0.03
LAMA4-217ENST00000521693 SPDYE2BA6NHP3 402 aa15.14■□□□□ 0.01
LAMA4-217ENST00000521693 SPDYE6P0CI01 402 aa15.14■□□□□ 0.01
LAMA4-217ENST00000521693 SPDYE2Q495Y8 402 aa15.14■□□□□ 0.01
LAMA4-217ENST00000521693 PITPNM1O00562 1244 aa15.12■□□□□ 0.01
LAMA4-217ENST00000521693 PIP4P2Q8N4L2 257 aa15.09■□□□□ 0.01
LAMA4-217ENST00000521693 MKRN4PQ13434 485 aaPredicted RBP15.07■□□□□ 0
LAMA4-217ENST00000521693 CSRNP3Q8WYN3 585 aa15□□□□□ -0.01
LAMA4-217ENST00000521693 FXR2P51116 673 aaKnown RBP eCLIP14.99□□□□□ -0.01
LAMA4-217ENST00000521693 ZNF692Q9BU19 519 aaPredicted RBP14.97□□□□□ -0.01
LAMA4-217ENST00000521693 SSUH2Q9Y2M2 353 aa14.91□□□□□ -0.02
LAMA4-217ENST00000521693 SPDYE1Q8NFV5 336 aaPredicted RBP14.89□□□□□ -0.03
LAMA4-217ENST00000521693 SP7Q8TDD2 431 aaPredicted RBP14.89□□□□□ -0.03
LAMA4-217ENST00000521693 CLEC11AQ9Y240 323 aa14.89□□□□□ -0.03
LAMA4-217ENST00000521693 HAX1O00165 279 aa14.86□□□□□ -0.03
LAMA4-217ENST00000521693 EHMT2Q96KQ7 1210 aa14.83□□□□□ -0.04
LAMA4-217ENST00000521693 PRKAR2AP13861 404 aaKnown RBP14.75□□□□□ -0.05
LAMA4-217ENST00000521693 PABPN1Q86U42 306 aaKnown RBP eCLIP14.73□□□□□ -0.05
LAMA4-217ENST00000521693 PRR29P0C7W0 189 aa14.63□□□□□ -0.07
LAMA4-217ENST00000521693 EVX2Q03828 476 aa14.61□□□□□ -0.07
LAMA4-217ENST00000521693 CHADLQ6NUI6 762 aa14.57□□□□□ -0.08
LAMA4-217ENST00000521693 C19orf67A6NJJ6 358 aa14.51□□□□□ -0.09
LAMA4-217ENST00000521693 SPDYE4A6NLX3 237 aa14.39□□□□□ -0.11
LAMA4-217ENST00000521693 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
LAMA4-217ENST00000521693 STAG3Q9UJ98 1225 aa14.35□□□□□ -0.11
LAMA4-217ENST00000521693 GABBR2O75899 941 aa14.32□□□□□ -0.12
LAMA4-217ENST00000521693 CD44P16070 742 aaKnown RBP14.29□□□□□ -0.12
LAMA4-217ENST00000521693 CREBZFQ9NS37 354 aa14.21□□□□□ -0.13
LAMA4-217ENST00000521693 CLCN6P51797 869 aa14.12□□□□□ -0.15
LAMA4-217ENST00000521693 ZRANB1Q9UGI0 708 aa14.09□□□□□ -0.15
LAMA4-217ENST00000521693 ZNF579Q8NAF0 562 aaKnown RBP14.05□□□□□ -0.16
LAMA4-217ENST00000521693 NPM1P06748 294 aaKnown RBP eCLIP14.01□□□□□ -0.17
LAMA4-217ENST00000521693 PAK3O75914 559 aaPredicted RBP14□□□□□ -0.17
LAMA4-217ENST00000521693 PROM2Q8N271 834 aa13.99□□□□□ -0.17
LAMA4-217ENST00000521693 LHX8Q68G74 356 aa13.98□□□□□ -0.17
LAMA4-217ENST00000521693 POTEIP0CG38 1075 aa13.97□□□□□ -0.17
LAMA4-217ENST00000521693 DCBLD2Q96PD2 775 aa13.97□□□□□ -0.17
LAMA4-217ENST00000521693 MNX1P50219 401 aaPredicted RBP13.95□□□□□ -0.18
LAMA4-217ENST00000521693 GALR2O43603 387 aaPredicted RBP13.87□□□□□ -0.19
LAMA4-217ENST00000521693 PHF12Q96QT6 1004 aa13.86□□□□□ -0.19
LAMA4-217ENST00000521693 PLEKHG5O94827 1062 aa13.79□□□□□ -0.2
LAMA4-217ENST00000521693 MIER1Q8N108 512 aa13.76□□□□□ -0.21
LAMA4-217ENST00000521693 TSPYL2Q9H2G4 693 aaPredicted RBP13.74□□□□□ -0.21
LAMA4-217ENST00000521693 MS4A3Q96HJ5 214 aa13.68□□□□□ -0.22
LAMA4-217ENST00000521693 PLCD3Q8N3E9 789 aa13.66□□□□□ -0.22
LAMA4-217ENST00000521693 FKBP8Q14318 412 aa13.64□□□□□ -0.23
LAMA4-217ENST00000521693 CCDC61Q9Y6R9 512 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms