RNA–Protein interactions for RNA: ENST00000521338.1

PCM1-214, Transcript of pericentriolar material 1, humanhuman

TSL 3

Gene PCM1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-214ENST00000521338 AEBP2Q6ZN18 517 aaPredicted RBP24.97■■□□□ 1.59
PCM1-214ENST00000521338 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
PCM1-214ENST00000521338 SENP3Q9H4L4 574 aaPredicted RBP21.21■□□□□ 0.99
PCM1-214ENST00000521338 PHF23Q9BUL5 403 aaPredicted RBP20.97■□□□□ 0.95
PCM1-214ENST00000521338 FOXD1Q16676 465 aa19.86■□□□□ 0.77
PCM1-214ENST00000521338 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
PCM1-214ENST00000521338 MSH5O43196 834 aa18.56■□□□□ 0.56
PCM1-214ENST00000521338 PPP6R1Q9UPN7 881 aa18.49■□□□□ 0.55
PCM1-214ENST00000521338 POTEDQ86YR6 584 aa18.44■□□□□ 0.54
PCM1-214ENST00000521338 PIAS4Q8N2W9 510 aaPredicted RBP18.44■□□□□ 0.54
PCM1-214ENST00000521338 ADRA2BP18089 450 aa18.37■□□□□ 0.53
PCM1-214ENST00000521338 MAPK8IP2Q13387 824 aaPredicted RBP16.95■□□□□ 0.3
PCM1-214ENST00000521338 DMRT2Q9Y5R5 561 aa16.84■□□□□ 0.29
PCM1-214ENST00000521338 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
PCM1-214ENST00000521338 PPP4R3CPQ6ZMV5 832 aa16.37■□□□□ 0.21
PCM1-214ENST00000521338 HOXD11P31277 338 aaPredicted RBP16.19■□□□□ 0.18
PCM1-214ENST00000521338 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
PCM1-214ENST00000521338 DCAF8L1A6NGE4 600 aa16.04■□□□□ 0.16
PCM1-214ENST00000521338 CACNB1Q02641 598 aaPredicted RBP16.01■□□□□ 0.15
PCM1-214ENST00000521338 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
PCM1-214ENST00000521338 RNF39Q9H2S5 420 aa15.89■□□□□ 0.13
PCM1-214ENST00000521338 DNAJC5BQ9UF47 199 aa15.66■□□□□ 0.1
PCM1-214ENST00000521338 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
PCM1-214ENST00000521338 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
PCM1-214ENST00000521338 NPM3O75607 178 aaKnown RBP15.48■□□□□ 0.07
PCM1-214ENST00000521338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.32■□□□□ 0.047e-11■■□□□ 14.2
PCM1-214ENST00000521338 KCNA4P22459 653 aa15.06■□□□□ 0
PCM1-214ENST00000521338 U3KPZ7 1027 aaPredicted RBP15.06■□□□□ 0
PCM1-214ENST00000521338 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
PCM1-214ENST00000521338 SLC4A2P04920 1241 aa14.87□□□□□ -0.03
PCM1-214ENST00000521338 DSG3P32926 999 aa14.83□□□□□ -0.04
PCM1-214ENST00000521338 CAPN15O75808 1086 aa14.79□□□□□ -0.04
PCM1-214ENST00000521338 TRHP20396 242 aaPredicted RBP14.53□□□□□ -0.08
PCM1-214ENST00000521338 APLP2Q06481 763 aa14.5□□□□□ -0.09
PCM1-214ENST00000521338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
PCM1-214ENST00000521338 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
PCM1-214ENST00000521338 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
PCM1-214ENST00000521338 ABCB7O75027 752 aa14.46□□□□□ -0.09
PCM1-214ENST00000521338 SAMD1Q6SPF0 538 aaPredicted RBP14.42□□□□□ -0.1
PCM1-214ENST00000521338 POTEHQ6S545 545 aa14.39□□□□□ -0.11
PCM1-214ENST00000521338 MYCNP04198 464 aaPredicted RBP14.27□□□□□ -0.13
PCM1-214ENST00000521338 POLA2Q14181 598 aa14.14□□□□□ -0.15
PCM1-214ENST00000521338 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
PCM1-214ENST00000521338 RBM42Q9BTD8 480 aaKnown RBP14.06□□□□□ -0.16
PCM1-214ENST00000521338 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
PCM1-214ENST00000521338 ATF5Q9Y2D1 282 aaPredicted RBP14.05□□□□□ -0.16
PCM1-214ENST00000521338 ZBTB22O15209 634 aa13.89□□□□□ -0.19
PCM1-214ENST00000521338 CHRDL2Q6WN34 429 aa13.86□□□□□ -0.19
PCM1-214ENST00000521338 ZBTB12Q9Y330 459 aaPredicted RBP13.78□□□□□ -0.2
PCM1-214ENST00000521338 AKT1S1Q96B36 256 aa13.75□□□□□ -0.21
PCM1-214ENST00000521338 OSCARQ8IYS5 282 aa13.69□□□□□ -0.22
PCM1-214ENST00000521338 ATXN8OSP0DMR3 200 aa13.65□□□□□ -0.22
PCM1-214ENST00000521338 REM2Q8IYK8 340 aaPredicted RBP13.64□□□□□ -0.23
PCM1-214ENST00000521338 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
PCM1-214ENST00000521338 PITPNM1O00562 1244 aa13.5□□□□□ -0.25
PCM1-214ENST00000521338 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.261e-7■□□□□ 9.6
PCM1-214ENST00000521338 SP7Q8TDD2 431 aaPredicted RBP13.42□□□□□ -0.26
PCM1-214ENST00000521338 SPDYE2BA6NHP3 402 aa13.39□□□□□ -0.27
PCM1-214ENST00000521338 SPDYE6P0CI01 402 aa13.39□□□□□ -0.27
PCM1-214ENST00000521338 MKRN4PQ13434 485 aaPredicted RBP13.39□□□□□ -0.27
PCM1-214ENST00000521338 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
PCM1-214ENST00000521338 FBLN2P98095 1184 aa13.37□□□□□ -0.27
PCM1-214ENST00000521338 HAX1O00165 279 aa13.26□□□□□ -0.29
PCM1-214ENST00000521338 SSUH2Q9Y2M2 353 aa13.24□□□□□ -0.29
PCM1-214ENST00000521338 EVX2Q03828 476 aa13.2□□□□□ -0.3
PCM1-214ENST00000521338 ZNF692Q9BU19 519 aaPredicted RBP13.19□□□□□ -0.3
PCM1-214ENST00000521338 SPDYE1Q8NFV5 336 aaPredicted RBP13.16□□□□□ -0.3
PCM1-214ENST00000521338 CLEC11AQ9Y240 323 aa13.14□□□□□ -0.31
PCM1-214ENST00000521338 PRKAR2AP13861 404 aaKnown RBP13.12□□□□□ -0.31
PCM1-214ENST00000521338 CSRNP3Q8WYN3 585 aa13.09□□□□□ -0.31
PCM1-214ENST00000521338 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
PCM1-214ENST00000521338 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
PCM1-214ENST00000521338 CHADLQ6NUI6 762 aa12.96□□□□□ -0.33
PCM1-214ENST00000521338 PRR29P0C7W0 189 aa12.91□□□□□ -0.34
PCM1-214ENST00000521338 GABBR2O75899 941 aa12.84□□□□□ -0.35
PCM1-214ENST00000521338 FARP1Q9Y4F1 1045 aaPredicted RBP12.75□□□□□ -0.37
PCM1-214ENST00000521338 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
PCM1-214ENST00000521338 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
PCM1-214ENST00000521338 CREBZFQ9NS37 354 aa12.63□□□□□ -0.39
PCM1-214ENST00000521338 POTEIP0CG38 1075 aa12.62□□□□□ -0.39
PCM1-214ENST00000521338 SPDYE4A6NLX3 237 aa12.6□□□□□ -0.39
PCM1-214ENST00000521338 LHX8Q68G74 356 aa12.58□□□□□ -0.4
PCM1-214ENST00000521338 STAG3Q9UJ98 1225 aa12.58□□□□□ -0.4
PCM1-214ENST00000521338 CLCN6P51797 869 aa12.54□□□□□ -0.4
PCM1-214ENST00000521338 ZNF579Q8NAF0 562 aaKnown RBP12.52□□□□□ -0.41
PCM1-214ENST00000521338 ZRANB1Q9UGI0 708 aa12.48□□□□□ -0.41
PCM1-214ENST00000521338 MNX1P50219 401 aaPredicted RBP12.43□□□□□ -0.42
PCM1-214ENST00000521338 DCBLD2Q96PD2 775 aa12.39□□□□□ -0.43
PCM1-214ENST00000521338 GALR2O43603 387 aaPredicted RBP12.38□□□□□ -0.43
PCM1-214ENST00000521338 PROM2Q8N271 834 aa12.37□□□□□ -0.43
PCM1-214ENST00000521338 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
PCM1-214ENST00000521338 NPM1P06748 294 aaKnown RBP eCLIP12.3□□□□□ -0.44
PCM1-214ENST00000521338 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
PCM1-214ENST00000521338 POTEB2H3BUK9 544 aa12.21□□□□□ -0.45
PCM1-214ENST00000521338 PELP1Q8IZL8 1130 aaKnown RBP12.2□□□□□ -0.46
PCM1-214ENST00000521338 OTUD5Q96G74 571 aa12.16□□□□□ -0.46
PCM1-214ENST00000521338 MS4A3Q96HJ5 214 aa12.16□□□□□ -0.46
PCM1-214ENST00000521338 ASTLQ6HA08 431 aaPredicted RBP12.13□□□□□ -0.47
PCM1-214ENST00000521338 CCDC61Q9Y6R9 512 aa12.12□□□□□ -0.47
PCM1-214ENST00000521338 TSPYL2Q9H2G4 693 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms