RNA–Protein interactions for RNA: ENST00000520752.1

SHPRH-208, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

TSL 4

Gene SHPRH, Length 821 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-208ENST00000520752 AEBP2Q6ZN18 517 aaPredicted RBP28.08■■■□□ 2.09
SHPRH-208ENST00000520752 CHIC1Q5VXU3 224 aa27.73■■■□□ 2.03
SHPRH-208ENST00000520752 PHF23Q9BUL5 403 aaPredicted RBP24.41■■□□□ 1.5
SHPRH-208ENST00000520752 SENP3Q9H4L4 574 aaPredicted RBP23.8■■□□□ 1.4
SHPRH-208ENST00000520752 PLPPR3Q6T4P5 718 aa22.65■■□□□ 1.22
SHPRH-208ENST00000520752 FOXD1Q16676 465 aa22.04■■□□□ 1.12
SHPRH-208ENST00000520752 PPP6R1Q9UPN7 881 aa21.44■■□□□ 1.02
SHPRH-208ENST00000520752 ADRA2BP18089 450 aa21.41■■□□□ 1.02
SHPRH-208ENST00000520752 PIAS4Q8N2W9 510 aaPredicted RBP20.82■□□□□ 0.92
SHPRH-208ENST00000520752 MSH5O43196 834 aa20.24■□□□□ 0.83
SHPRH-208ENST00000520752 PPP4R3CPQ6ZMV5 832 aa19.97■□□□□ 0.79
SHPRH-208ENST00000520752 KCNA4P22459 653 aa19.81■□□□□ 0.76
SHPRH-208ENST00000520752 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
SHPRH-208ENST00000520752 NCBP3Q53F19 620 aaKnown RBP19.56■□□□□ 0.72
SHPRH-208ENST00000520752 CNKSR2Q8WXI2 1034 aa19.38■□□□□ 0.69
SHPRH-208ENST00000520752 MAPK8IP2Q13387 824 aaPredicted RBP19.34■□□□□ 0.69
SHPRH-208ENST00000520752 NPM3O75607 178 aaKnown RBP19.24■□□□□ 0.67
SHPRH-208ENST00000520752 DMRT2Q9Y5R5 561 aa19.05■□□□□ 0.64
SHPRH-208ENST00000520752 RNF216Q9NWF9 866 aaPredicted RBP18.94■□□□□ 0.62
SHPRH-208ENST00000520752 SLC4A1APQ9BWU0 796 aaKnown RBP18.92■□□□□ 0.62
SHPRH-208ENST00000520752 HOXD11P31277 338 aaPredicted RBP18.8■□□□□ 0.6
SHPRH-208ENST00000520752 DNAJC5BQ9UF47 199 aa18.77■□□□□ 0.6
SHPRH-208ENST00000520752 EHMT2Q96KQ7 1210 aa18.64■□□□□ 0.57
SHPRH-208ENST00000520752 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
SHPRH-208ENST00000520752 ZBTB22O15209 634 aa18.24■□□□□ 0.51
SHPRH-208ENST00000520752 FOXD4L1Q9NU39 408 aa18.17■□□□□ 0.5
SHPRH-208ENST00000520752 DCAF8L1A6NGE4 600 aa18.12■□□□□ 0.49
SHPRH-208ENST00000520752 SLC4A2P04920 1241 aa18.12■□□□□ 0.49
SHPRH-208ENST00000520752 POTEDQ86YR6 584 aa17.9■□□□□ 0.46
SHPRH-208ENST00000520752 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.85■□□□□ 0.45
SHPRH-208ENST00000520752 MYCNP04198 464 aaPredicted RBP17.78■□□□□ 0.44
SHPRH-208ENST00000520752 U3KPZ7 1027 aaPredicted RBP17.61■□□□□ 0.41
SHPRH-208ENST00000520752 ATXN8OSP0DMR3 200 aa17.58■□□□□ 0.4
SHPRH-208ENST00000520752 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.52■□□□□ 0.4
SHPRH-208ENST00000520752 HNRNPUL2Q1KMD3 747 aaKnown RBP17.52■□□□□ 0.4
SHPRH-208ENST00000520752 SAMD1Q6SPF0 538 aaPredicted RBP17.46■□□□□ 0.39
SHPRH-208ENST00000520752 RNF39Q9H2S5 420 aa17.37■□□□□ 0.37
SHPRH-208ENST00000520752 APLP2Q06481 763 aa17.27■□□□□ 0.36
SHPRH-208ENST00000520752 ATF5Q9Y2D1 282 aaPredicted RBP17.26■□□□□ 0.35
SHPRH-208ENST00000520752 C1QBPQ07021 282 aaKnown RBP17.2■□□□□ 0.34
SHPRH-208ENST00000520752 SPINK5Q9NQ38 1064 aaPredicted RBP17.01■□□□□ 0.31
SHPRH-208ENST00000520752 ZNF219Q9P2Y4 722 aaPredicted RBP17■□□□□ 0.31
SHPRH-208ENST00000520752 CAPN15O75808 1086 aa16.92■□□□□ 0.3
SHPRH-208ENST00000520752 TRHP20396 242 aaPredicted RBP16.9■□□□□ 0.3
SHPRH-208ENST00000520752 POLA2Q14181 598 aa16.73■□□□□ 0.27
SHPRH-208ENST00000520752 CACNB1Q02641 598 aaPredicted RBP16.66■□□□□ 0.26
SHPRH-208ENST00000520752 DSG3P32926 999 aa16.61■□□□□ 0.25
SHPRH-208ENST00000520752 ABCB7O75027 752 aa16.6■□□□□ 0.25
SHPRH-208ENST00000520752 FKBP8Q14318 412 aa16.56■□□□□ 0.24
SHPRH-208ENST00000520752 FBLN2P98095 1184 aa16.54■□□□□ 0.24
SHPRH-208ENST00000520752 MKRN4PQ13434 485 aaPredicted RBP16.54■□□□□ 0.24
SHPRH-208ENST00000520752 ZBTB12Q9Y330 459 aaPredicted RBP16.51■□□□□ 0.23
SHPRH-208ENST00000520752 SPDYE4A6NLX3 237 aa16.3■□□□□ 0.2
SHPRH-208ENST00000520752 PROM2Q8N271 834 aa16.14■□□□□ 0.17
SHPRH-208ENST00000520752 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
SHPRH-208ENST00000520752 SPDYE2BA6NHP3 402 aa16.08■□□□□ 0.16
SHPRH-208ENST00000520752 SPDYE6P0CI01 402 aa16.08■□□□□ 0.16
SHPRH-208ENST00000520752 SPDYE2Q495Y8 402 aa16.08■□□□□ 0.16
SHPRH-208ENST00000520752 ZNF692Q9BU19 519 aaPredicted RBP16.04■□□□□ 0.16
SHPRH-208ENST00000520752 SSUH2Q9Y2M2 353 aa15.99■□□□□ 0.15
SHPRH-208ENST00000520752 FBXO3Q9UK99 471 aa15.96■□□□□ 0.15
SHPRH-208ENST00000520752 RBM42Q9BTD8 480 aaKnown RBP15.83■□□□□ 0.12
SHPRH-208ENST00000520752 PABPN1Q86U42 306 aaKnown RBP eCLIP15.82■□□□□ 0.12
SHPRH-208ENST00000520752 AKT1S1Q96B36 256 aa15.71■□□□□ 0.11
SHPRH-208ENST00000520752 VASPP50552 380 aaPredicted RBP15.7■□□□□ 0.1
SHPRH-208ENST00000520752 STAG3Q9UJ98 1225 aa15.68■□□□□ 0.1
SHPRH-208ENST00000520752 AMER1Q5JTC6 1135 aaPredicted RBP15.63■□□□□ 0.09
SHPRH-208ENST00000520752 RTN4Q9NQC3 1192 aaKnown RBP15.56■□□□□ 0.08
SHPRH-208ENST00000520752 REM2Q8IYK8 340 aaPredicted RBP15.54■□□□□ 0.08
SHPRH-208ENST00000520752 SPDYE1Q8NFV5 336 aaPredicted RBP15.53■□□□□ 0.08
SHPRH-208ENST00000520752 IFNLR1Q8IU57 520 aaPredicted RBP15.52■□□□□ 0.08
SHPRH-208ENST00000520752 MIER1Q8N108 512 aa15.42■□□□□ 0.06
SHPRH-208ENST00000520752 PLCD3Q8N3E9 789 aa15.42■□□□□ 0.06
SHPRH-208ENST00000520752 PELP1Q8IZL8 1130 aaKnown RBP15.4■□□□□ 0.06
SHPRH-208ENST00000520752 CLEC11AQ9Y240 323 aa15.38■□□□□ 0.05
SHPRH-208ENST00000520752 KLHL34Q8N239 644 aa15.34■□□□□ 0.05
SHPRH-208ENST00000520752 PITPNM1O00562 1244 aa15.33■□□□□ 0.04
SHPRH-208ENST00000520752 PLEKHG5O94827 1062 aa15.33■□□□□ 0.04
SHPRH-208ENST00000520752 PRR29P0C7W0 189 aa15.33■□□□□ 0.04
SHPRH-208ENST00000520752 SPOCK2Q92563 424 aa15.29■□□□□ 0.04
SHPRH-208ENST00000520752 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
SHPRH-208ENST00000520752 MYT1Q01538 1121 aa15.22■□□□□ 0.03
SHPRH-208ENST00000520752 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
SHPRH-208ENST00000520752 MNX1P50219 401 aaPredicted RBP15.12■□□□□ 0.01
SHPRH-208ENST00000520752 PKD2Q13563 968 aa15.11■□□□□ 0.01
SHPRH-208ENST00000520752 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -0
SHPRH-208ENST00000520752 CHRDL2Q6WN34 429 aa15.04■□□□□ -0
SHPRH-208ENST00000520752 NUBP1P53384 320 aa15.03■□□□□ -0
SHPRH-208ENST00000520752 CHADLQ6NUI6 762 aa14.98□□□□□ -0.01
SHPRH-208ENST00000520752 NPM1P06748 294 aaKnown RBP eCLIP14.97□□□□□ -0.01
SHPRH-208ENST00000520752 CIZ1Q9ULV3 898 aaPredicted RBP14.95□□□□□ -0.02
SHPRH-208ENST00000520752 PRKAR2AP13861 404 aaKnown RBP14.94□□□□□ -0.02
SHPRH-208ENST00000520752 GSE1Q14687 1217 aa14.94□□□□□ -0.02
SHPRH-208ENST00000520752 ECM2O94769 699 aaPredicted RBP14.93□□□□□ -0.02
SHPRH-208ENST00000520752 FARP1Q9Y4F1 1045 aaPredicted RBP14.92□□□□□ -0.02
SHPRH-208ENST00000520752 PIP4P2Q8N4L2 257 aa14.91□□□□□ -0.02
SHPRH-208ENST00000520752 TRIM41Q8WV44 630 aa14.9□□□□□ -0.02
SHPRH-208ENST00000520752 FAM212AQ96EL1 285 aa14.88□□□□□ -0.03
SHPRH-208ENST00000520752 DCAF8Q5TAQ9 597 aa14.87□□□□□ -0.03
SHPRH-208ENST00000520752 RASEFQ8IZ41 740 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms