RNA–Protein interactions for RNA: ENST00000520400.5

CTNNA1-222, Transcript of catenin alpha 1, humanhuman

TSL 4

Gene CTNNA1, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-222ENST00000520400 AEBP2Q6ZN18 517 aaPredicted RBP22.28■■□□□ 1.16
CTNNA1-222ENST00000520400 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
CTNNA1-222ENST00000520400 PHF23Q9BUL5 403 aaPredicted RBP19.44■□□□□ 0.7
CTNNA1-222ENST00000520400 SENP3Q9H4L4 574 aaPredicted RBP18.6■□□□□ 0.57
CTNNA1-222ENST00000520400 PLPPR3Q6T4P5 718 aa17.82■□□□□ 0.44
CTNNA1-222ENST00000520400 FOXD1Q16676 465 aa17.39■□□□□ 0.37
CTNNA1-222ENST00000520400 PPP6R1Q9UPN7 881 aa17.07■□□□□ 0.32
CTNNA1-222ENST00000520400 ADRA2BP18089 450 aa17.02■□□□□ 0.32
CTNNA1-222ENST00000520400 PIAS4Q8N2W9 510 aaPredicted RBP16.38■□□□□ 0.21
CTNNA1-222ENST00000520400 KCNA4P22459 653 aa15.9■□□□□ 0.14
CTNNA1-222ENST00000520400 PPP4R3CPQ6ZMV5 832 aa15.83■□□□□ 0.12
CTNNA1-222ENST00000520400 MSH5O43196 834 aa15.7■□□□□ 0.1
CTNNA1-222ENST00000520400 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
CTNNA1-222ENST00000520400 NPM3O75607 178 aaKnown RBP15.32■□□□□ 0.04
CTNNA1-222ENST00000520400 NCBP3Q53F19 620 aaKnown RBP15.32■□□□□ 0.04
CTNNA1-222ENST00000520400 POTEDQ86YR6 584 aa15.32■□□□□ 0.04
CTNNA1-222ENST00000520400 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
CTNNA1-222ENST00000520400 CNKSR2Q8WXI2 1034 aa15.24■□□□□ 0.03
CTNNA1-222ENST00000520400 EHMT2Q96KQ7 1210 aa15.08■□□□□ 0
CTNNA1-222ENST00000520400 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0
CTNNA1-222ENST00000520400 DMRT2Q9Y5R5 561 aa14.96□□□□□ -0.01
CTNNA1-222ENST00000520400 RNF216Q9NWF9 866 aaPredicted RBP14.88□□□□□ -0.03
CTNNA1-222ENST00000520400 CSRNP3Q8WYN3 585 aa14.83□□□□□ -0.04
CTNNA1-222ENST00000520400 HOXD11P31277 338 aaPredicted RBP14.79□□□□□ -0.04
CTNNA1-222ENST00000520400 ZBTB22O15209 634 aa14.73□□□□□ -0.05
CTNNA1-222ENST00000520400 DNAJC5BQ9UF47 199 aa14.73□□□□□ -0.05
CTNNA1-222ENST00000520400 SLC4A2P04920 1241 aa14.46□□□□□ -0.09
CTNNA1-222ENST00000520400 FOXD4L1Q9NU39 408 aa14.42□□□□□ -0.1
CTNNA1-222ENST00000520400 DCAF8L1A6NGE4 600 aa14.25□□□□□ -0.13
CTNNA1-222ENST00000520400 MYCNP04198 464 aaPredicted RBP14.02□□□□□ -0.17
CTNNA1-222ENST00000520400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14□□□□□ -0.179e-8■□□□□ 9.6
CTNNA1-222ENST00000520400 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
CTNNA1-222ENST00000520400 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
CTNNA1-222ENST00000520400 ATXN8OSP0DMR3 200 aa13.81□□□□□ -0.2
CTNNA1-222ENST00000520400 SAMD1Q6SPF0 538 aaPredicted RBP13.65□□□□□ -0.22
CTNNA1-222ENST00000520400 RNF39Q9H2S5 420 aa13.62□□□□□ -0.23
CTNNA1-222ENST00000520400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.61□□□□□ -0.23
CTNNA1-222ENST00000520400 HNRNPUL2Q1KMD3 747 aaKnown RBP13.61□□□□□ -0.23
CTNNA1-222ENST00000520400 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
CTNNA1-222ENST00000520400 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
CTNNA1-222ENST00000520400 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
CTNNA1-222ENST00000520400 TRHP20396 242 aaPredicted RBP13.34□□□□□ -0.27
CTNNA1-222ENST00000520400 APLP2Q06481 763 aa13.32□□□□□ -0.28
CTNNA1-222ENST00000520400 CACNB1Q02641 598 aaPredicted RBP13.31□□□□□ -0.28
CTNNA1-222ENST00000520400 CAPN15O75808 1086 aa13.29□□□□□ -0.28
CTNNA1-222ENST00000520400 FKBP8Q14318 412 aa13.29□□□□□ -0.28
CTNNA1-222ENST00000520400 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
CTNNA1-222ENST00000520400 POLA2Q14181 598 aa13.21□□□□□ -0.29
CTNNA1-222ENST00000520400 ABCB7O75027 752 aa13.17□□□□□ -0.3
CTNNA1-222ENST00000520400 DSG3P32926 999 aa13.08□□□□□ -0.32
CTNNA1-222ENST00000520400 FBLN2P98095 1184 aa12.95□□□□□ -0.34
CTNNA1-222ENST00000520400 SPDYE4A6NLX3 237 aa12.94□□□□□ -0.34
CTNNA1-222ENST00000520400 PROM2Q8N271 834 aa12.85□□□□□ -0.35
CTNNA1-222ENST00000520400 ZBTB12Q9Y330 459 aaPredicted RBP12.82□□□□□ -0.36
CTNNA1-222ENST00000520400 OSCARQ8IYS5 282 aa12.79□□□□□ -0.36
CTNNA1-222ENST00000520400 RTN4Q9NQC3 1192 aaKnown RBP12.73□□□□□ -0.37
CTNNA1-222ENST00000520400 SSUH2Q9Y2M2 353 aa12.64□□□□□ -0.39
CTNNA1-222ENST00000520400 ZNF692Q9BU19 519 aaPredicted RBP12.63□□□□□ -0.39
CTNNA1-222ENST00000520400 SPDYE2BA6NHP3 402 aa12.6□□□□□ -0.39
CTNNA1-222ENST00000520400 SPDYE6P0CI01 402 aa12.6□□□□□ -0.39
CTNNA1-222ENST00000520400 SPDYE2Q495Y8 402 aa12.6□□□□□ -0.39
CTNNA1-222ENST00000520400 FBXO3Q9UK99 471 aa12.55□□□□□ -0.4
CTNNA1-222ENST00000520400 AMER1Q5JTC6 1135 aaPredicted RBP12.54□□□□□ -0.4
CTNNA1-222ENST00000520400 VASPP50552 380 aaPredicted RBP12.53□□□□□ -0.4
CTNNA1-222ENST00000520400 PABPN1Q86U42 306 aaKnown RBP eCLIP12.53□□□□□ -0.4
CTNNA1-222ENST00000520400 IFNLR1Q8IU57 520 aaPredicted RBP12.47□□□□□ -0.41
CTNNA1-222ENST00000520400 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
CTNNA1-222ENST00000520400 AKT1S1Q96B36 256 aa12.26□□□□□ -0.45
CTNNA1-222ENST00000520400 RBM42Q9BTD8 480 aaKnown RBP12.26□□□□□ -0.45
CTNNA1-222ENST00000520400 REM2Q8IYK8 340 aaPredicted RBP12.23□□□□□ -0.45
CTNNA1-222ENST00000520400 PKD2Q13563 968 aa12.19□□□□□ -0.46
CTNNA1-222ENST00000520400 MIER1Q8N108 512 aa12.19□□□□□ -0.46
CTNNA1-222ENST00000520400 PLCD3Q8N3E9 789 aa12.18□□□□□ -0.46
CTNNA1-222ENST00000520400 KLHL34Q8N239 644 aa12.15□□□□□ -0.46
CTNNA1-222ENST00000520400 SPDYE1Q8NFV5 336 aaPredicted RBP12.13□□□□□ -0.47
CTNNA1-222ENST00000520400 SPOCK2Q92563 424 aa12.13□□□□□ -0.47
CTNNA1-222ENST00000520400 CLEC11AQ9Y240 323 aa12.12□□□□□ -0.47
CTNNA1-222ENST00000520400 PITPNM1O00562 1244 aa12.11□□□□□ -0.47
CTNNA1-222ENST00000520400 CREBZFQ9NS37 354 aa12.08□□□□□ -0.48
CTNNA1-222ENST00000520400 MNX1P50219 401 aaPredicted RBP12.04□□□□□ -0.48
CTNNA1-222ENST00000520400 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
CTNNA1-222ENST00000520400 POTEHQ6S545 545 aa11.98□□□□□ -0.49
CTNNA1-222ENST00000520400 NUBP1P53384 320 aa11.97□□□□□ -0.49
CTNNA1-222ENST00000520400 RGL2O15211 777 aa11.92□□□□□ -0.5
CTNNA1-222ENST00000520400 ECM2O94769 699 aaPredicted RBP11.92□□□□□ -0.5
CTNNA1-222ENST00000520400 CHADLQ6NUI6 762 aa11.92□□□□□ -0.5
CTNNA1-222ENST00000520400 PLEKHG5O94827 1062 aa11.91□□□□□ -0.5
CTNNA1-222ENST00000520400 ZBTB47Q9UFB7 747 aaPredicted RBP11.9□□□□□ -0.5
CTNNA1-222ENST00000520400 CIZ1Q9ULV3 898 aaPredicted RBP11.9□□□□□ -0.5
CTNNA1-222ENST00000520400 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
CTNNA1-222ENST00000520400 RASEFQ8IZ41 740 aa11.86□□□□□ -0.51
CTNNA1-222ENST00000520400 NPM1P06748 294 aaKnown RBP eCLIP11.85□□□□□ -0.51
CTNNA1-222ENST00000520400 DCAF8L2P0C7V8 631 aa11.84□□□□□ -0.51
CTNNA1-222ENST00000520400 RNF25Q96BH1 459 aaPredicted RBP11.82□□□□□ -0.52
CTNNA1-222ENST00000520400 FXR2P51116 673 aaKnown RBP eCLIP11.8□□□□□ -0.521e-6■■□□□ 12.9
CTNNA1-222ENST00000520400 DCAF8Q5TAQ9 597 aa11.77□□□□□ -0.53
CTNNA1-222ENST00000520400 PRKAR2AP13861 404 aaKnown RBP11.76□□□□□ -0.53
CTNNA1-222ENST00000520400 CHRDL2Q6WN34 429 aa11.76□□□□□ -0.53
CTNNA1-222ENST00000520400 FARP1Q9Y4F1 1045 aaPredicted RBP11.75□□□□□ -0.53
CTNNA1-222ENST00000520400 GSE1Q14687 1217 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms