RNA–Protein interactions for RNA: ENST00000519245.1

LAMA4-212, Transcript of laminin subunit alpha 4, humanhuman

TSL 3

Gene LAMA4, Length 587 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-212ENST00000519245 AEBP2Q6ZN18 517 aaPredicted RBP31.31■■■□□ 2.6
LAMA4-212ENST00000519245 CHIC1Q5VXU3 224 aa29.32■■■□□ 2.28
LAMA4-212ENST00000519245 SENP3Q9H4L4 574 aaPredicted RBP26.67■■□□□ 1.86
LAMA4-212ENST00000519245 PHF23Q9BUL5 403 aaPredicted RBP26.29■■□□□ 1.8
LAMA4-212ENST00000519245 FOXD1Q16676 465 aa24.96■■□□□ 1.59
LAMA4-212ENST00000519245 POTEDQ86YR6 584 aa23.54■■□□□ 1.36
LAMA4-212ENST00000519245 MSH5O43196 834 aa23.43■■□□□ 1.34
LAMA4-212ENST00000519245 PLPPR3Q6T4P5 718 aa23.22■■□□□ 1.31
LAMA4-212ENST00000519245 PIAS4Q8N2W9 510 aaPredicted RBP23.19■■□□□ 1.3
LAMA4-212ENST00000519245 PPP6R1Q9UPN7 881 aa23.08■■□□□ 1.29
LAMA4-212ENST00000519245 ADRA2BP18089 450 aa22.96■■□□□ 1.27
LAMA4-212ENST00000519245 MAPK8IP2Q13387 824 aaPredicted RBP21.21■□□□□ 0.99
LAMA4-212ENST00000519245 DMRT2Q9Y5R5 561 aa21.13■□□□□ 0.97
LAMA4-212ENST00000519245 SCAF1Q9H7N4 1312 aaKnown RBP20.91■□□□□ 0.94
LAMA4-212ENST00000519245 CACNB1Q02641 598 aaPredicted RBP20.32■□□□□ 0.84
LAMA4-212ENST00000519245 PPP4R3CPQ6ZMV5 832 aa20.32■□□□□ 0.84
LAMA4-212ENST00000519245 DCAF8L1A6NGE4 600 aa20.21■□□□□ 0.83
LAMA4-212ENST00000519245 HOXD11P31277 338 aaPredicted RBP20.21■□□□□ 0.83
LAMA4-212ENST00000519245 CNKSR2Q8WXI2 1034 aa20.01■□□□□ 0.79
LAMA4-212ENST00000519245 RNF39Q9H2S5 420 aa20.01■□□□□ 0.79
LAMA4-212ENST00000519245 RNF216Q9NWF9 866 aaPredicted RBP19.94■□□□□ 0.78
LAMA4-212ENST00000519245 C1QBPQ07021 282 aaKnown RBP19.65■□□□□ 0.74
LAMA4-212ENST00000519245 DNAJC5BQ9UF47 199 aa19.56■□□□□ 0.72
LAMA4-212ENST00000519245 NCBP3Q53F19 620 aaKnown RBP19.37■□□□□ 0.69
LAMA4-212ENST00000519245 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.19■□□□□ 0.66
LAMA4-212ENST00000519245 NPM3O75607 178 aaKnown RBP19.18■□□□□ 0.66
LAMA4-212ENST00000519245 U3KPZ7 1027 aaPredicted RBP18.83■□□□□ 0.6
LAMA4-212ENST00000519245 SPINK5Q9NQ38 1064 aaPredicted RBP18.66■□□□□ 0.58
LAMA4-212ENST00000519245 DSG3P32926 999 aa18.61■□□□□ 0.57
LAMA4-212ENST00000519245 CAPN15O75808 1086 aa18.58■□□□□ 0.56
LAMA4-212ENST00000519245 KCNA4P22459 653 aa18.5■□□□□ 0.55
LAMA4-212ENST00000519245 SLC4A2P04920 1241 aa18.44■□□□□ 0.54
LAMA4-212ENST00000519245 POTEHQ6S545 545 aa18.36■□□□□ 0.53
LAMA4-212ENST00000519245 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
LAMA4-212ENST00000519245 ABCB7O75027 752 aa18.15■□□□□ 0.5
LAMA4-212ENST00000519245 ZNF219Q9P2Y4 722 aaPredicted RBP18.15■□□□□ 0.5
LAMA4-212ENST00000519245 APLP2Q06481 763 aa18.13■□□□□ 0.49
LAMA4-212ENST00000519245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.06■□□□□ 0.48
LAMA4-212ENST00000519245 HNRNPUL2Q1KMD3 747 aaKnown RBP18.06■□□□□ 0.48
LAMA4-212ENST00000519245 SAMD1Q6SPF0 538 aaPredicted RBP17.97■□□□□ 0.47
LAMA4-212ENST00000519245 MYCNP04198 464 aaPredicted RBP17.71■□□□□ 0.43
LAMA4-212ENST00000519245 RBM42Q9BTD8 480 aaKnown RBP17.7■□□□□ 0.42
LAMA4-212ENST00000519245 POLA2Q14181 598 aa17.65■□□□□ 0.42
LAMA4-212ENST00000519245 CHRDL2Q6WN34 429 aa17.51■□□□□ 0.39
LAMA4-212ENST00000519245 ATF5Q9Y2D1 282 aaPredicted RBP17.41■□□□□ 0.38
LAMA4-212ENST00000519245 SLC4A1APQ9BWU0 796 aaKnown RBP17.35■□□□□ 0.37
LAMA4-212ENST00000519245 FOXD4L1Q9NU39 408 aa17.34■□□□□ 0.37
LAMA4-212ENST00000519245 AKT1S1Q96B36 256 aa17.24■□□□□ 0.35
LAMA4-212ENST00000519245 ZBTB12Q9Y330 459 aaPredicted RBP17.22■□□□□ 0.35
LAMA4-212ENST00000519245 OSCARQ8IYS5 282 aa17.13■□□□□ 0.33
LAMA4-212ENST00000519245 REM2Q8IYK8 340 aaPredicted RBP17.11■□□□□ 0.33
LAMA4-212ENST00000519245 ZBTB22O15209 634 aa17.06■□□□□ 0.32
LAMA4-212ENST00000519245 SP7Q8TDD2 431 aaPredicted RBP17.04■□□□□ 0.32
LAMA4-212ENST00000519245 PIP4P2Q8N4L2 257 aa17.03■□□□□ 0.32
LAMA4-212ENST00000519245 PITPNM1O00562 1244 aa16.95■□□□□ 0.3
LAMA4-212ENST00000519245 FXR2P51116 673 aaKnown RBP eCLIP16.87■□□□□ 0.29
LAMA4-212ENST00000519245 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
LAMA4-212ENST00000519245 HAX1O00165 279 aa16.76■□□□□ 0.27
LAMA4-212ENST00000519245 SPDYE2BA6NHP3 402 aa16.68■□□□□ 0.26
LAMA4-212ENST00000519245 SPDYE6P0CI01 402 aa16.68■□□□□ 0.26
LAMA4-212ENST00000519245 SPDYE2Q495Y8 402 aa16.68■□□□□ 0.26
LAMA4-212ENST00000519245 FBLN2P98095 1184 aa16.64■□□□□ 0.25
LAMA4-212ENST00000519245 EVX2Q03828 476 aa16.62■□□□□ 0.25
LAMA4-212ENST00000519245 MKRN4PQ13434 485 aaPredicted RBP16.59■□□□□ 0.25
LAMA4-212ENST00000519245 PRKAR2AP13861 404 aaKnown RBP16.47■□□□□ 0.23
LAMA4-212ENST00000519245 SSUH2Q9Y2M2 353 aa16.47■□□□□ 0.23
LAMA4-212ENST00000519245 SPDYE1Q8NFV5 336 aaPredicted RBP16.46■□□□□ 0.23
LAMA4-212ENST00000519245 CLEC11AQ9Y240 323 aa16.45■□□□□ 0.22
LAMA4-212ENST00000519245 ZNF692Q9BU19 519 aaPredicted RBP16.41■□□□□ 0.22
LAMA4-212ENST00000519245 C19orf67A6NJJ6 358 aa16.34■□□□□ 0.21
LAMA4-212ENST00000519245 CHADLQ6NUI6 762 aa16.23■□□□□ 0.19
LAMA4-212ENST00000519245 GABBR2O75899 941 aa16.18■□□□□ 0.18
LAMA4-212ENST00000519245 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
LAMA4-212ENST00000519245 PRR29P0C7W0 189 aa16.13■□□□□ 0.17
LAMA4-212ENST00000519245 LHX8Q68G74 356 aa15.96■□□□□ 0.15
LAMA4-212ENST00000519245 FARP1Q9Y4F1 1045 aaPredicted RBP15.94■□□□□ 0.14
LAMA4-212ENST00000519245 CD44P16070 742 aaKnown RBP15.93■□□□□ 0.14
LAMA4-212ENST00000519245 CSRNP3Q8WYN3 585 aa15.89■□□□□ 0.13
LAMA4-212ENST00000519245 POTEIP0CG38 1075 aa15.88■□□□□ 0.13
LAMA4-212ENST00000519245 CLCN6P51797 869 aa15.72■□□□□ 0.11
LAMA4-212ENST00000519245 CREBZFQ9NS37 354 aa15.71■□□□□ 0.11
LAMA4-212ENST00000519245 ZNF579Q8NAF0 562 aaKnown RBP15.68■□□□□ 0.1
LAMA4-212ENST00000519245 ZRANB1Q9UGI0 708 aa15.64■□□□□ 0.09
LAMA4-212ENST00000519245 DCBLD2Q96PD2 775 aa15.61■□□□□ 0.09
LAMA4-212ENST00000519245 STAG3Q9UJ98 1225 aa15.6■□□□□ 0.09
LAMA4-212ENST00000519245 SPDYE4A6NLX3 237 aa15.55■□□□□ 0.08
LAMA4-212ENST00000519245 GALR2O43603 387 aaPredicted RBP15.54■□□□□ 0.08
LAMA4-212ENST00000519245 EHMT2Q96KQ7 1210 aa15.46■□□□□ 0.07
LAMA4-212ENST00000519245 MNX1P50219 401 aaPredicted RBP15.43■□□□□ 0.06
LAMA4-212ENST00000519245 PHF12Q96QT6 1004 aa15.43■□□□□ 0.06
LAMA4-212ENST00000519245 PAK3O75914 559 aaPredicted RBP15.37■□□□□ 0.05
LAMA4-212ENST00000519245 POTEB2H3BUK9 544 aa15.36■□□□□ 0.05
LAMA4-212ENST00000519245 OTUD5Q96G74 571 aa15.35■□□□□ 0.05
LAMA4-212ENST00000519245 NPM1P06748 294 aaKnown RBP eCLIP15.32■□□□□ 0.04
LAMA4-212ENST00000519245 PELP1Q8IZL8 1130 aaKnown RBP15.29■□□□□ 0.04
LAMA4-212ENST00000519245 MS4A3Q96HJ5 214 aa15.21■□□□□ 0.03
LAMA4-212ENST00000519245 PLSCR2Q9NRY7 297 aa15.2■□□□□ 0.02
LAMA4-212ENST00000519245 ASTLQ6HA08 431 aaPredicted RBP15.18■□□□□ 0.02
LAMA4-212ENST00000519245 PROM2Q8N271 834 aa15.18■□□□□ 0.02
LAMA4-212ENST00000519245 ATMINO43313 823 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms