RNA–Protein interactions for RNA: ENST00000518569.1

VPS13B-207, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-207ENST00000518569 AEBP2Q6ZN18 517 aaPredicted RBP19.87■□□□□ 0.77
VPS13B-207ENST00000518569 CHIC1Q5VXU3 224 aa18.93■□□□□ 0.62
VPS13B-207ENST00000518569 SENP3Q9H4L4 574 aaPredicted RBP17■□□□□ 0.31
VPS13B-207ENST00000518569 PHF23Q9BUL5 403 aaPredicted RBP16.77■□□□□ 0.28
VPS13B-207ENST00000518569 FOXD1Q16676 465 aa15.81■□□□□ 0.12
VPS13B-207ENST00000518569 PLPPR3Q6T4P5 718 aa15.19■□□□□ 0.02
VPS13B-207ENST00000518569 PIAS4Q8N2W9 510 aaPredicted RBP14.86□□□□□ -0.03
VPS13B-207ENST00000518569 MSH5O43196 834 aa14.82□□□□□ -0.04
VPS13B-207ENST00000518569 ADRA2BP18089 450 aa14.8□□□□□ -0.04
VPS13B-207ENST00000518569 PPP6R1Q9UPN7 881 aa14.79□□□□□ -0.04
VPS13B-207ENST00000518569 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
VPS13B-207ENST00000518569 SCAF1Q9H7N4 1312 aaKnown RBP13.58□□□□□ -0.24
VPS13B-207ENST00000518569 MAPK8IP2Q13387 824 aaPredicted RBP13.57□□□□□ -0.24
VPS13B-207ENST00000518569 DMRT2Q9Y5R5 561 aa13.46□□□□□ -0.25
VPS13B-207ENST00000518569 PPP4R3CPQ6ZMV5 832 aa13.32□□□□□ -0.28
VPS13B-207ENST00000518569 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
VPS13B-207ENST00000518569 KCNA4P22459 653 aa13.07□□□□□ -0.32
VPS13B-207ENST00000518569 CNKSR2Q8WXI2 1034 aa13.05□□□□□ -0.32
VPS13B-207ENST00000518569 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
VPS13B-207ENST00000518569 HOXD11P31277 338 aaPredicted RBP12.95□□□□□ -0.34
VPS13B-207ENST00000518569 RNF216Q9NWF9 866 aaPredicted RBP12.9□□□□□ -0.34
VPS13B-207ENST00000518569 NPM3O75607 178 aaKnown RBP12.74□□□□□ -0.37
VPS13B-207ENST00000518569 CACNB1Q02641 598 aaPredicted RBP12.74□□□□□ -0.37
VPS13B-207ENST00000518569 RNF39Q9H2S5 420 aa12.61□□□□□ -0.39
VPS13B-207ENST00000518569 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
VPS13B-207ENST00000518569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS13B-207ENST00000518569 DNAJC5BQ9UF47 199 aa12.46□□□□□ -0.41
VPS13B-207ENST00000518569 C1QBPQ07021 282 aaKnown RBP12.44□□□□□ -0.42
VPS13B-207ENST00000518569 EHMT2Q96KQ7 1210 aa12.27□□□□□ -0.45
VPS13B-207ENST00000518569 U3KPZ7 1027 aaPredicted RBP12.13□□□□□ -0.47
VPS13B-207ENST00000518569 CSRNP3Q8WYN3 585 aa12.11□□□□□ -0.47
VPS13B-207ENST00000518569 FOXD4L1Q9NU39 408 aa12.03□□□□□ -0.48
VPS13B-207ENST00000518569 ZBTB22O15209 634 aa12.02□□□□□ -0.49
VPS13B-207ENST00000518569 CAPN15O75808 1086 aa12.01□□□□□ -0.49
VPS13B-207ENST00000518569 SLC4A2P04920 1241 aa12□□□□□ -0.49
VPS13B-207ENST00000518569 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
VPS13B-207ENST00000518569 APLP2Q06481 763 aa11.87□□□□□ -0.51
VPS13B-207ENST00000518569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
VPS13B-207ENST00000518569 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
VPS13B-207ENST00000518569 TRHP20396 242 aaPredicted RBP11.83□□□□□ -0.52
VPS13B-207ENST00000518569 DSG3P32926 999 aa11.83□□□□□ -0.52
VPS13B-207ENST00000518569 MYCNP04198 464 aaPredicted RBP11.79□□□□□ -0.52
VPS13B-207ENST00000518569 SAMD1Q6SPF0 538 aaPredicted RBP11.77□□□□□ -0.53
VPS13B-207ENST00000518569 ZNF219Q9P2Y4 722 aaPredicted RBP11.77□□□□□ -0.53
VPS13B-207ENST00000518569 ABCB7O75027 752 aa11.74□□□□□ -0.53
VPS13B-207ENST00000518569 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
VPS13B-207ENST00000518569 POLA2Q14181 598 aa11.47□□□□□ -0.57
VPS13B-207ENST00000518569 ATF5Q9Y2D1 282 aaPredicted RBP11.4□□□□□ -0.58
VPS13B-207ENST00000518569 RBM42Q9BTD8 480 aaKnown RBP11.34□□□□□ -0.59
VPS13B-207ENST00000518569 POTEHQ6S545 545 aa11.29□□□□□ -0.6
VPS13B-207ENST00000518569 ZBTB12Q9Y330 459 aaPredicted RBP11.26□□□□□ -0.61
VPS13B-207ENST00000518569 OSCARQ8IYS5 282 aa11.13□□□□□ -0.63
VPS13B-207ENST00000518569 CHRDL2Q6WN34 429 aa11.06□□□□□ -0.64
VPS13B-207ENST00000518569 AKT1S1Q96B36 256 aa11.06□□□□□ -0.64
VPS13B-207ENST00000518569 FBLN2P98095 1184 aa11.03□□□□□ -0.64
VPS13B-207ENST00000518569 REM2Q8IYK8 340 aaPredicted RBP10.96□□□□□ -0.65
VPS13B-207ENST00000518569 MKRN4PQ13434 485 aaPredicted RBP10.94□□□□□ -0.66
VPS13B-207ENST00000518569 FKBP8Q14318 412 aa10.92□□□□□ -0.66
VPS13B-207ENST00000518569 SPDYE2BA6NHP3 402 aa10.88□□□□□ -0.67
VPS13B-207ENST00000518569 SPDYE6P0CI01 402 aa10.88□□□□□ -0.67
VPS13B-207ENST00000518569 SPDYE2Q495Y8 402 aa10.88□□□□□ -0.67
VPS13B-207ENST00000518569 PITPNM1O00562 1244 aa10.86□□□□□ -0.67
VPS13B-207ENST00000518569 PIP4P2Q8N4L2 257 aa10.8□□□□□ -0.68
VPS13B-207ENST00000518569 ZNF692Q9BU19 519 aaPredicted RBP10.8□□□□□ -0.68
VPS13B-207ENST00000518569 SPDYE4A6NLX3 237 aa10.78□□□□□ -0.68
VPS13B-207ENST00000518569 CLEC11AQ9Y240 323 aa10.75□□□□□ -0.69
VPS13B-207ENST00000518569 SPDYE1Q8NFV5 336 aaPredicted RBP10.71□□□□□ -0.69
VPS13B-207ENST00000518569 FXR2P51116 673 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS13B-207ENST00000518569 SSUH2Q9Y2M2 353 aa10.7□□□□□ -0.7
VPS13B-207ENST00000518569 PROM2Q8N271 834 aa10.68□□□□□ -0.7
VPS13B-207ENST00000518569 HAX1O00165 279 aa10.65□□□□□ -0.7
VPS13B-207ENST00000518569 PABPN1Q86U42 306 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS13B-207ENST00000518569 SP7Q8TDD2 431 aaPredicted RBP10.61□□□□□ -0.71
VPS13B-207ENST00000518569 PRKAR2AP13861 404 aaKnown RBP10.6□□□□□ -0.71
VPS13B-207ENST00000518569 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
VPS13B-207ENST00000518569 PRR29P0C7W0 189 aa10.54□□□□□ -0.72
VPS13B-207ENST00000518569 CHADLQ6NUI6 762 aa10.5□□□□□ -0.73
VPS13B-207ENST00000518569 EVX2Q03828 476 aa10.42□□□□□ -0.74
VPS13B-207ENST00000518569 STAG3Q9UJ98 1225 aa10.41□□□□□ -0.74
VPS13B-207ENST00000518569 C19orf67A6NJJ6 358 aa10.37□□□□□ -0.75
VPS13B-207ENST00000518569 VASPP50552 380 aaPredicted RBP10.37□□□□□ -0.75
VPS13B-207ENST00000518569 FARP1Q9Y4F1 1045 aaPredicted RBP10.31□□□□□ -0.76
VPS13B-207ENST00000518569 AMER1Q5JTC6 1135 aaPredicted RBP10.29□□□□□ -0.76
VPS13B-207ENST00000518569 CD44P16070 742 aaKnown RBP10.28□□□□□ -0.76
VPS13B-207ENST00000518569 GABBR2O75899 941 aa10.23□□□□□ -0.77
VPS13B-207ENST00000518569 IFNLR1Q8IU57 520 aaPredicted RBP10.23□□□□□ -0.77
VPS13B-207ENST00000518569 CREBZFQ9NS37 354 aa10.22□□□□□ -0.77
VPS13B-207ENST00000518569 MIER1Q8N108 512 aa10.2□□□□□ -0.78
VPS13B-207ENST00000518569 PLCD3Q8N3E9 789 aa10.2□□□□□ -0.78
VPS13B-207ENST00000518569 RTN4Q9NQC3 1192 aaKnown RBP10.19□□□□□ -0.78
VPS13B-207ENST00000518569 PLEKHG5O94827 1062 aa10.18□□□□□ -0.78
VPS13B-207ENST00000518569 ZRANB1Q9UGI0 708 aa10.15□□□□□ -0.78
VPS13B-207ENST00000518569 ZBTB47Q9UFB7 747 aaPredicted RBP10.14□□□□□ -0.79
VPS13B-207ENST00000518569 KLHL34Q8N239 644 aa10.13□□□□□ -0.79
VPS13B-207ENST00000518569 PAK3O75914 559 aaPredicted RBP10.12□□□□□ -0.79
VPS13B-207ENST00000518569 NPM1P06748 294 aaKnown RBP eCLIP10.11□□□□□ -0.79
VPS13B-207ENST00000518569 SPOCK2Q92563 424 aa10.1□□□□□ -0.79
VPS13B-207ENST00000518569 ZNF579Q8NAF0 562 aaKnown RBP10.07□□□□□ -0.8
VPS13B-207ENST00000518569 CLCN6P51797 869 aa10.05□□□□□ -0.8
VPS13B-207ENST00000518569 DCBLD2Q96PD2 775 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 286 ms