RNA–Protein interactions for RNA: ENST00000518504.5

SMN1-210, Transcript of survival of motor neuron 1, telomeric, humanhuman

TSL 5

Gene SMN1, Length 453 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-210ENST00000518504 AEBP2Q6ZN18 517 aaPredicted RBP28.48■■■□□ 2.15
SMN1-210ENST00000518504 CHIC1Q5VXU3 224 aa26.81■■□□□ 1.88
SMN1-210ENST00000518504 SENP3Q9H4L4 574 aaPredicted RBP24.22■■□□□ 1.47
SMN1-210ENST00000518504 PHF23Q9BUL5 403 aaPredicted RBP23.95■■□□□ 1.42
SMN1-210ENST00000518504 FOXD1Q16676 465 aa22.67■■□□□ 1.22
SMN1-210ENST00000518504 PLPPR3Q6T4P5 718 aa21.33■■□□□ 1.01
SMN1-210ENST00000518504 MSH5O43196 834 aa21.18■□□□□ 0.98
SMN1-210ENST00000518504 PIAS4Q8N2W9 510 aaPredicted RBP21.16■□□□□ 0.98
SMN1-210ENST00000518504 PPP6R1Q9UPN7 881 aa21.12■□□□□ 0.97
SMN1-210ENST00000518504 ADRA2BP18089 450 aa21.06■□□□□ 0.96
SMN1-210ENST00000518504 POTEDQ86YR6 584 aa21.06■□□□□ 0.96
SMN1-210ENST00000518504 MAPK8IP2Q13387 824 aaPredicted RBP19.41■□□□□ 0.7
SMN1-210ENST00000518504 DMRT2Q9Y5R5 561 aa19.19■□□□□ 0.66
SMN1-210ENST00000518504 SCAF1Q9H7N4 1312 aaKnown RBP19.13■□□□□ 0.65
SMN1-210ENST00000518504 PPP4R3CPQ6ZMV5 832 aa18.73■□□□□ 0.59
SMN1-210ENST00000518504 DCAF8L1A6NGE4 600 aa18.55■□□□□ 0.56
SMN1-210ENST00000518504 HOXD11P31277 338 aaPredicted RBP18.4■□□□□ 0.54
SMN1-210ENST00000518504 CACNB1Q02641 598 aaPredicted RBP18.38■□□□□ 0.53
SMN1-210ENST00000518504 CNKSR2Q8WXI2 1034 aa18.37■□□□□ 0.53
SMN1-210ENST00000518504 RNF216Q9NWF9 866 aaPredicted RBP18.22■□□□□ 0.51
SMN1-210ENST00000518504 RNF39Q9H2S5 420 aa18.1■□□□□ 0.49
SMN1-210ENST00000518504 NCBP3Q53F19 620 aaKnown RBP17.89■□□□□ 0.45
SMN1-210ENST00000518504 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
SMN1-210ENST00000518504 NPM3O75607 178 aaKnown RBP17.7■□□□□ 0.42
SMN1-210ENST00000518504 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
SMN1-210ENST00000518504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.61■□□□□ 0.41
SMN1-210ENST00000518504 KCNA4P22459 653 aa17.26■□□□□ 0.35
SMN1-210ENST00000518504 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
SMN1-210ENST00000518504 SPINK5Q9NQ38 1064 aaPredicted RBP17.07■□□□□ 0.32
SMN1-210ENST00000518504 CAPN15O75808 1086 aa17.03■□□□□ 0.32
SMN1-210ENST00000518504 SLC4A2P04920 1241 aa16.95■□□□□ 0.3
SMN1-210ENST00000518504 DSG3P32926 999 aa16.92■□□□□ 0.3
SMN1-210ENST00000518504 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
SMN1-210ENST00000518504 ABCB7O75027 752 aa16.68■□□□□ 0.26
SMN1-210ENST00000518504 APLP2Q06481 763 aa16.6■□□□□ 0.25
SMN1-210ENST00000518504 ZNF219Q9P2Y4 722 aaPredicted RBP16.58■□□□□ 0.24
SMN1-210ENST00000518504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
SMN1-210ENST00000518504 HNRNPUL2Q1KMD3 747 aaKnown RBP16.55■□□□□ 0.24
SMN1-210ENST00000518504 SAMD1Q6SPF0 538 aaPredicted RBP16.48■□□□□ 0.23
SMN1-210ENST00000518504 POTEHQ6S545 545 aa16.46■□□□□ 0.23
SMN1-210ENST00000518504 MYCNP04198 464 aaPredicted RBP16.32■□□□□ 0.2
SMN1-210ENST00000518504 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
SMN1-210ENST00000518504 POLA2Q14181 598 aa16.22■□□□□ 0.19
SMN1-210ENST00000518504 RBM42Q9BTD8 480 aaKnown RBP16.08■□□□□ 0.16
SMN1-210ENST00000518504 FOXD4L1Q9NU39 408 aa16.08■□□□□ 0.16
SMN1-210ENST00000518504 ATF5Q9Y2D1 282 aaPredicted RBP16.08■□□□□ 0.16
SMN1-210ENST00000518504 ZBTB22O15209 634 aa15.86■□□□□ 0.13
SMN1-210ENST00000518504 CHRDL2Q6WN34 429 aa15.86■□□□□ 0.13
SMN1-210ENST00000518504 ZBTB12Q9Y330 459 aaPredicted RBP15.75■□□□□ 0.11
SMN1-210ENST00000518504 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
SMN1-210ENST00000518504 AKT1S1Q96B36 256 aa15.7■□□□□ 0.1
SMN1-210ENST00000518504 REM2Q8IYK8 340 aaPredicted RBP15.6■□□□□ 0.09
SMN1-210ENST00000518504 ATXN8OSP0DMR3 200 aa15.52■□□□□ 0.08
SMN1-210ENST00000518504 PIP4P2Q8N4L2 257 aa15.47■□□□□ 0.07
SMN1-210ENST00000518504 PITPNM1O00562 1244 aa15.46■□□□□ 0.07
SMN1-210ENST00000518504 FBLN2P98095 1184 aa15.37■□□□□ 0.05
SMN1-210ENST00000518504 SP7Q8TDD2 431 aaPredicted RBP15.34■□□□□ 0.05
SMN1-210ENST00000518504 FXR2P51116 673 aaKnown RBP eCLIP15.31■□□□□ 0.04
SMN1-210ENST00000518504 SPDYE2BA6NHP3 402 aa15.29■□□□□ 0.04
SMN1-210ENST00000518504 SPDYE6P0CI01 402 aa15.29■□□□□ 0.04
SMN1-210ENST00000518504 SPDYE2Q495Y8 402 aa15.29■□□□□ 0.04
SMN1-210ENST00000518504 MKRN4PQ13434 485 aaPredicted RBP15.28■□□□□ 0.04
SMN1-210ENST00000518504 HAX1O00165 279 aa15.27■□□□□ 0.04
SMN1-210ENST00000518504 CLEC11AQ9Y240 323 aa15.17■□□□□ 0.02
SMN1-210ENST00000518504 ZNF692Q9BU19 519 aaPredicted RBP15.15■□□□□ 0.02
SMN1-210ENST00000518504 EVX2Q03828 476 aa15.1■□□□□ 0.01
SMN1-210ENST00000518504 SPDYE1Q8NFV5 336 aaPredicted RBP15.08■□□□□ 0
SMN1-210ENST00000518504 SSUH2Q9Y2M2 353 aa15.07■□□□□ 0
SMN1-210ENST00000518504 PRKAR2AP13861 404 aaKnown RBP15.06■□□□□ 0
SMN1-210ENST00000518504 CSRNP3Q8WYN3 585 aa14.96□□□□□ -0.01
SMN1-210ENST00000518504 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
SMN1-210ENST00000518504 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
SMN1-210ENST00000518504 PRR29P0C7W0 189 aa14.84□□□□□ -0.03
SMN1-210ENST00000518504 C19orf67A6NJJ6 358 aa14.83□□□□□ -0.04
SMN1-210ENST00000518504 EHMT2Q96KQ7 1210 aa14.77□□□□□ -0.05
SMN1-210ENST00000518504 GABBR2O75899 941 aa14.69□□□□□ -0.06
SMN1-210ENST00000518504 FARP1Q9Y4F1 1045 aaPredicted RBP14.59□□□□□ -0.07
SMN1-210ENST00000518504 CD44P16070 742 aaKnown RBP14.57□□□□□ -0.08
SMN1-210ENST00000518504 SPDYE4A6NLX3 237 aa14.46□□□□□ -0.09
SMN1-210ENST00000518504 CREBZFQ9NS37 354 aa14.43□□□□□ -0.1
SMN1-210ENST00000518504 LHX8Q68G74 356 aa14.41□□□□□ -0.1
SMN1-210ENST00000518504 POTEIP0CG38 1075 aa14.39□□□□□ -0.11
SMN1-210ENST00000518504 STAG3Q9UJ98 1225 aa14.39□□□□□ -0.11
SMN1-210ENST00000518504 ZRANB1Q9UGI0 708 aa14.36□□□□□ -0.11
SMN1-210ENST00000518504 ZNF579Q8NAF0 562 aaKnown RBP14.27□□□□□ -0.13
SMN1-210ENST00000518504 DCBLD2Q96PD2 775 aa14.26□□□□□ -0.13
SMN1-210ENST00000518504 CLCN6P51797 869 aa14.22□□□□□ -0.13
SMN1-210ENST00000518504 GALR2O43603 387 aaPredicted RBP14.2□□□□□ -0.14
SMN1-210ENST00000518504 PHF12Q96QT6 1004 aa14.17□□□□□ -0.14
SMN1-210ENST00000518504 PAK3O75914 559 aaPredicted RBP14.14□□□□□ -0.15
SMN1-210ENST00000518504 MNX1P50219 401 aaPredicted RBP14.14□□□□□ -0.15
SMN1-210ENST00000518504 NPM1P06748 294 aaKnown RBP eCLIP14.12□□□□□ -0.15
SMN1-210ENST00000518504 PROM2Q8N271 834 aa14□□□□□ -0.17
SMN1-210ENST00000518504 PELP1Q8IZL8 1130 aaKnown RBP13.96□□□□□ -0.17
SMN1-210ENST00000518504 TSPYL2Q9H2G4 693 aaPredicted RBP13.96□□□□□ -0.17
SMN1-210ENST00000518504 MS4A3Q96HJ5 214 aa13.95□□□□□ -0.18
SMN1-210ENST00000518504 POTEB2H3BUK9 544 aa13.94□□□□□ -0.18
SMN1-210ENST00000518504 OTUD5Q96G74 571 aa13.89□□□□□ -0.19
SMN1-210ENST00000518504 MIER1Q8N108 512 aa13.85□□□□□ -0.19
SMN1-210ENST00000518504 CCDC61Q9Y6R9 512 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 290.2 ms