RNA–Protein interactions for RNA: ENST00000518151.1

CSMD1-203, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 5

Gene CSMD1, Length 334 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-203ENST00000518151 AEBP2Q6ZN18 517 aaPredicted RBP28.92■■■□□ 2.22
CSMD1-203ENST00000518151 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
CSMD1-203ENST00000518151 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
CSMD1-203ENST00000518151 PHF23Q9BUL5 403 aaPredicted RBP24.43■■□□□ 1.5
CSMD1-203ENST00000518151 FOXD1Q16676 465 aa22.95■■□□□ 1.26
CSMD1-203ENST00000518151 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
CSMD1-203ENST00000518151 PPP6R1Q9UPN7 881 aa21.65■■□□□ 1.06
CSMD1-203ENST00000518151 ADRA2BP18089 450 aa21.63■■□□□ 1.05
CSMD1-203ENST00000518151 PIAS4Q8N2W9 510 aaPredicted RBP21.59■■□□□ 1.05
CSMD1-203ENST00000518151 MSH5O43196 834 aa21.48■■□□□ 1.03
CSMD1-203ENST00000518151 POTEDQ86YR6 584 aa20.3■□□□□ 0.84
CSMD1-203ENST00000518151 SCAF1Q9H7N4 1312 aaKnown RBP19.98■□□□□ 0.79
CSMD1-203ENST00000518151 MAPK8IP2Q13387 824 aaPredicted RBP19.74■□□□□ 0.75
CSMD1-203ENST00000518151 PPP4R3CPQ6ZMV5 832 aa19.69■□□□□ 0.74
CSMD1-203ENST00000518151 DMRT2Q9Y5R5 561 aa19.66■□□□□ 0.74
CSMD1-203ENST00000518151 CNKSR2Q8WXI2 1034 aa19.3■□□□□ 0.68
CSMD1-203ENST00000518151 NCBP3Q53F19 620 aaKnown RBP19.15■□□□□ 0.66
CSMD1-203ENST00000518151 HOXD11P31277 338 aaPredicted RBP19.06■□□□□ 0.64
CSMD1-203ENST00000518151 RNF216Q9NWF9 866 aaPredicted RBP19.04■□□□□ 0.64
CSMD1-203ENST00000518151 DCAF8L1A6NGE4 600 aa18.85■□□□□ 0.61
CSMD1-203ENST00000518151 NPM3O75607 178 aaKnown RBP18.74■□□□□ 0.59
CSMD1-203ENST00000518151 KCNA4P22459 653 aa18.65■□□□□ 0.58
CSMD1-203ENST00000518151 DNAJC5BQ9UF47 199 aa18.43■□□□□ 0.54
CSMD1-203ENST00000518151 RNF39Q9H2S5 420 aa18.29■□□□□ 0.52
CSMD1-203ENST00000518151 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.21■□□□□ 0.51
CSMD1-203ENST00000518151 CACNB1Q02641 598 aaPredicted RBP18.19■□□□□ 0.5
CSMD1-203ENST00000518151 C1QBPQ07021 282 aaKnown RBP18.11■□□□□ 0.49
CSMD1-203ENST00000518151 U3KPZ7 1027 aaPredicted RBP17.79■□□□□ 0.44
CSMD1-203ENST00000518151 SLC4A2P04920 1241 aa17.78■□□□□ 0.44
CSMD1-203ENST00000518151 SLC4A1APQ9BWU0 796 aaKnown RBP17.74■□□□□ 0.43
CSMD1-203ENST00000518151 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
CSMD1-203ENST00000518151 HNRNPUL2Q1KMD3 747 aaKnown RBP17.56■□□□□ 0.4
CSMD1-203ENST00000518151 APLP2Q06481 763 aa17.52■□□□□ 0.4
CSMD1-203ENST00000518151 CAPN15O75808 1086 aa17.44■□□□□ 0.38
CSMD1-203ENST00000518151 SAMD1Q6SPF0 538 aaPredicted RBP17.44■□□□□ 0.38
CSMD1-203ENST00000518151 MYCNP04198 464 aaPredicted RBP17.4■□□□□ 0.38
CSMD1-203ENST00000518151 SPINK5Q9NQ38 1064 aaPredicted RBP17.4■□□□□ 0.38
CSMD1-203ENST00000518151 FOXD4L1Q9NU39 408 aa17.38■□□□□ 0.37
CSMD1-203ENST00000518151 ZNF219Q9P2Y4 722 aaPredicted RBP17.28■□□□□ 0.36
CSMD1-203ENST00000518151 TRHP20396 242 aaPredicted RBP17.22■□□□□ 0.35
CSMD1-203ENST00000518151 DSG3P32926 999 aa17.22■□□□□ 0.35
CSMD1-203ENST00000518151 ZBTB22O15209 634 aa17.1■□□□□ 0.33
CSMD1-203ENST00000518151 ABCB7O75027 752 aa17.01■□□□□ 0.31
CSMD1-203ENST00000518151 ATXN8OSP0DMR3 200 aa16.87■□□□□ 0.29
CSMD1-203ENST00000518151 POLA2Q14181 598 aa16.83■□□□□ 0.28
CSMD1-203ENST00000518151 ATF5Q9Y2D1 282 aaPredicted RBP16.83■□□□□ 0.28
CSMD1-203ENST00000518151 CSRNP3Q8WYN3 585 aa16.64■□□□□ 0.25
CSMD1-203ENST00000518151 ZBTB12Q9Y330 459 aaPredicted RBP16.64■□□□□ 0.25
CSMD1-203ENST00000518151 EHMT2Q96KQ7 1210 aa16.63■□□□□ 0.25
CSMD1-203ENST00000518151 RBM42Q9BTD8 480 aaKnown RBP16.55■□□□□ 0.24
CSMD1-203ENST00000518151 FBLN2P98095 1184 aa16.34■□□□□ 0.21
CSMD1-203ENST00000518151 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
CSMD1-203ENST00000518151 AKT1S1Q96B36 256 aa16.19■□□□□ 0.18
CSMD1-203ENST00000518151 SPDYE2BA6NHP3 402 aa16.1■□□□□ 0.17
CSMD1-203ENST00000518151 SPDYE6P0CI01 402 aa16.1■□□□□ 0.17
CSMD1-203ENST00000518151 MKRN4PQ13434 485 aaPredicted RBP16.1■□□□□ 0.17
CSMD1-203ENST00000518151 SPDYE2Q495Y8 402 aa16.1■□□□□ 0.17
CSMD1-203ENST00000518151 POTEHQ6S545 545 aa16.01■□□□□ 0.15
CSMD1-203ENST00000518151 REM2Q8IYK8 340 aaPredicted RBP15.98■□□□□ 0.15
CSMD1-203ENST00000518151 CHRDL2Q6WN34 429 aa15.97■□□□□ 0.15
CSMD1-203ENST00000518151 ZNF692Q9BU19 519 aaPredicted RBP15.93■□□□□ 0.14
CSMD1-203ENST00000518151 SSUH2Q9Y2M2 353 aa15.86■□□□□ 0.13
CSMD1-203ENST00000518151 PITPNM1O00562 1244 aa15.79■□□□□ 0.12
CSMD1-203ENST00000518151 SPDYE1Q8NFV5 336 aaPredicted RBP15.74■□□□□ 0.11
CSMD1-203ENST00000518151 PABPN1Q86U42 306 aaKnown RBP eCLIP15.68■□□□□ 0.1
CSMD1-203ENST00000518151 CLEC11AQ9Y240 323 aa15.65■□□□□ 0.1
CSMD1-203ENST00000518151 PIP4P2Q8N4L2 257 aa15.63■□□□□ 0.09
CSMD1-203ENST00000518151 FXR2P51116 673 aaKnown RBP eCLIP15.61■□□□□ 0.09
CSMD1-203ENST00000518151 SPDYE4A6NLX3 237 aa15.59■□□□□ 0.09
CSMD1-203ENST00000518151 PRR29P0C7W0 189 aa15.47■□□□□ 0.07
CSMD1-203ENST00000518151 STAG3Q9UJ98 1225 aa15.42■□□□□ 0.06
CSMD1-203ENST00000518151 PRKAR2AP13861 404 aaKnown RBP15.41■□□□□ 0.06
CSMD1-203ENST00000518151 HAX1O00165 279 aa15.3■□□□□ 0.04
CSMD1-203ENST00000518151 CHADLQ6NUI6 762 aa15.25■□□□□ 0.03
CSMD1-203ENST00000518151 PROM2Q8N271 834 aa15.24■□□□□ 0.03
CSMD1-203ENST00000518151 SP7Q8TDD2 431 aaPredicted RBP15.18■□□□□ 0.02
CSMD1-203ENST00000518151 FKBP8Q14318 412 aa15.12■□□□□ 0.01
CSMD1-203ENST00000518151 FARP1Q9Y4F1 1045 aaPredicted RBP15.12■□□□□ 0.01
CSMD1-203ENST00000518151 C19orf67A6NJJ6 358 aa15.09■□□□□ 0.01
CSMD1-203ENST00000518151 CREBZFQ9NS37 354 aa15.09■□□□□ 0.01
CSMD1-203ENST00000518151 EVX2Q03828 476 aa15□□□□□ -0.01
CSMD1-203ENST00000518151 CD44P16070 742 aaKnown RBP14.96□□□□□ -0.01
CSMD1-203ENST00000518151 NPM1P06748 294 aaKnown RBP eCLIP14.95□□□□□ -0.02
CSMD1-203ENST00000518151 PLEKHG5O94827 1062 aa14.94□□□□□ -0.02
CSMD1-203ENST00000518151 MNX1P50219 401 aaPredicted RBP14.85□□□□□ -0.03
CSMD1-203ENST00000518151 MIER1Q8N108 512 aa14.85□□□□□ -0.03
CSMD1-203ENST00000518151 PAK3O75914 559 aaPredicted RBP14.84□□□□□ -0.03
CSMD1-203ENST00000518151 FBXO3Q9UK99 471 aa14.83□□□□□ -0.04
CSMD1-203ENST00000518151 CLCN6P51797 869 aa14.82□□□□□ -0.04
CSMD1-203ENST00000518151 PLCD3Q8N3E9 789 aa14.8□□□□□ -0.04
CSMD1-203ENST00000518151 ZRANB1Q9UGI0 708 aa14.79□□□□□ -0.04
CSMD1-203ENST00000518151 GABBR2O75899 941 aa14.77□□□□□ -0.05
CSMD1-203ENST00000518151 ZNF579Q8NAF0 562 aaKnown RBP14.75□□□□□ -0.05
CSMD1-203ENST00000518151 ZBTB47Q9UFB7 747 aaPredicted RBP14.75□□□□□ -0.05
CSMD1-203ENST00000518151 TSPYL2Q9H2G4 693 aaPredicted RBP14.58□□□□□ -0.08
CSMD1-203ENST00000518151 VASPP50552 380 aaPredicted RBP14.56□□□□□ -0.08
CSMD1-203ENST00000518151 PHF12Q96QT6 1004 aa14.56□□□□□ -0.08
CSMD1-203ENST00000518151 RASEFQ8IZ41 740 aa14.52□□□□□ -0.09
CSMD1-203ENST00000518151 DCBLD2Q96PD2 775 aa14.52□□□□□ -0.09
CSMD1-203ENST00000518151 CCDC61Q9Y6R9 512 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms