RNA–Protein interactions for RNA: ENST00000517533.5

CTNNA1-202, Transcript of catenin alpha 1, humanhuman

TSL 3

Gene CTNNA1, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-202ENST00000517533 AEBP2Q6ZN18 517 aaPredicted RBP22.89■■□□□ 1.25
CTNNA1-202ENST00000517533 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
CTNNA1-202ENST00000517533 PHF23Q9BUL5 403 aaPredicted RBP20.21■□□□□ 0.83
CTNNA1-202ENST00000517533 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
CTNNA1-202ENST00000517533 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
CTNNA1-202ENST00000517533 FOXD1Q16676 465 aa17.8■□□□□ 0.44
CTNNA1-202ENST00000517533 ADRA2BP18089 450 aa17.67■□□□□ 0.42
CTNNA1-202ENST00000517533 PPP6R1Q9UPN7 881 aa17.66■□□□□ 0.42
CTNNA1-202ENST00000517533 KCNA4P22459 653 aa16.9■□□□□ 0.3
CTNNA1-202ENST00000517533 PIAS4Q8N2W9 510 aaPredicted RBP16.83■□□□□ 0.28
CTNNA1-202ENST00000517533 PPP4R3CPQ6ZMV5 832 aa16.56■□□□□ 0.24
CTNNA1-202ENST00000517533 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
CTNNA1-202ENST00000517533 NCBP3Q53F19 620 aaKnown RBP16.11■□□□□ 0.17
CTNNA1-202ENST00000517533 NPM3O75607 178 aaKnown RBP16.09■□□□□ 0.17
CTNNA1-202ENST00000517533 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
CTNNA1-202ENST00000517533 MSH5O43196 834 aa16■□□□□ 0.15
CTNNA1-202ENST00000517533 CSRNP3Q8WYN3 585 aa15.94■□□□□ 0.14
CTNNA1-202ENST00000517533 CNKSR2Q8WXI2 1034 aa15.9■□□□□ 0.14
CTNNA1-202ENST00000517533 MAPK8IP2Q13387 824 aaPredicted RBP15.87■□□□□ 0.13
CTNNA1-202ENST00000517533 SCAF1Q9H7N4 1312 aaKnown RBP15.83■□□□□ 0.12
CTNNA1-202ENST00000517533 ZBTB22O15209 634 aa15.65■□□□□ 0.1
CTNNA1-202ENST00000517533 RNF216Q9NWF9 866 aaPredicted RBP15.46■□□□□ 0.07
CTNNA1-202ENST00000517533 DNAJC5BQ9UF47 199 aa15.46■□□□□ 0.07
CTNNA1-202ENST00000517533 DMRT2Q9Y5R5 561 aa15.4■□□□□ 0.06
CTNNA1-202ENST00000517533 HOXD11P31277 338 aaPredicted RBP15.3■□□□□ 0.04
CTNNA1-202ENST00000517533 FOXD4L1Q9NU39 408 aa15.27■□□□□ 0.04
CTNNA1-202ENST00000517533 SLC4A2P04920 1241 aa15.12■□□□□ 0.01
CTNNA1-202ENST00000517533 MYCNP04198 464 aaPredicted RBP14.74□□□□□ -0.05
CTNNA1-202ENST00000517533 DCAF8L1A6NGE4 600 aa14.64□□□□□ -0.07
CTNNA1-202ENST00000517533 ATXN8OSP0DMR3 200 aa14.62□□□□□ -0.07
CTNNA1-202ENST00000517533 ATF5Q9Y2D1 282 aaPredicted RBP14.53□□□□□ -0.08
CTNNA1-202ENST00000517533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.5□□□□□ -0.099e-8■□□□□ 9.6
CTNNA1-202ENST00000517533 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
CTNNA1-202ENST00000517533 FKBP8Q14318 412 aa14.29□□□□□ -0.12
CTNNA1-202ENST00000517533 SAMD1Q6SPF0 538 aaPredicted RBP14.26□□□□□ -0.13
CTNNA1-202ENST00000517533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.21□□□□□ -0.13
CTNNA1-202ENST00000517533 HNRNPUL2Q1KMD3 747 aaKnown RBP14.21□□□□□ -0.13
CTNNA1-202ENST00000517533 POTEDQ86YR6 584 aa14.08□□□□□ -0.16
CTNNA1-202ENST00000517533 RTN4Q9NQC3 1192 aaKnown RBP14.08□□□□□ -0.16
CTNNA1-202ENST00000517533 ZNF219Q9P2Y4 722 aaPredicted RBP14.07□□□□□ -0.16
CTNNA1-202ENST00000517533 SPINK5Q9NQ38 1064 aaPredicted RBP13.93□□□□□ -0.18
CTNNA1-202ENST00000517533 MKRN4PQ13434 485 aaPredicted RBP13.9□□□□□ -0.18
CTNNA1-202ENST00000517533 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
CTNNA1-202ENST00000517533 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
CTNNA1-202ENST00000517533 APLP2Q06481 763 aa13.86□□□□□ -0.19
CTNNA1-202ENST00000517533 TRHP20396 242 aaPredicted RBP13.81□□□□□ -0.2
CTNNA1-202ENST00000517533 POLA2Q14181 598 aa13.72□□□□□ -0.21
CTNNA1-202ENST00000517533 SPDYE4A6NLX3 237 aa13.7□□□□□ -0.22
CTNNA1-202ENST00000517533 CAPN15O75808 1086 aa13.7□□□□□ -0.22
CTNNA1-202ENST00000517533 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
CTNNA1-202ENST00000517533 PROM2Q8N271 834 aa13.64□□□□□ -0.23
CTNNA1-202ENST00000517533 ABCB7O75027 752 aa13.59□□□□□ -0.23
CTNNA1-202ENST00000517533 FBLN2P98095 1184 aa13.58□□□□□ -0.24
CTNNA1-202ENST00000517533 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
CTNNA1-202ENST00000517533 FBXO3Q9UK99 471 aa13.46□□□□□ -0.25
CTNNA1-202ENST00000517533 DSG3P32926 999 aa13.43□□□□□ -0.26
CTNNA1-202ENST00000517533 VASPP50552 380 aaPredicted RBP13.41□□□□□ -0.26
CTNNA1-202ENST00000517533 ZBTB12Q9Y330 459 aaPredicted RBP13.36□□□□□ -0.27
CTNNA1-202ENST00000517533 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
CTNNA1-202ENST00000517533 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
CTNNA1-202ENST00000517533 ZNF692Q9BU19 519 aaPredicted RBP13.2□□□□□ -0.3
CTNNA1-202ENST00000517533 SSUH2Q9Y2M2 353 aa13.2□□□□□ -0.3
CTNNA1-202ENST00000517533 SPDYE2BA6NHP3 402 aa13.14□□□□□ -0.31
CTNNA1-202ENST00000517533 SPDYE6P0CI01 402 aa13.14□□□□□ -0.31
CTNNA1-202ENST00000517533 PKD2Q13563 968 aa13.14□□□□□ -0.31
CTNNA1-202ENST00000517533 SPDYE2Q495Y8 402 aa13.14□□□□□ -0.31
CTNNA1-202ENST00000517533 PABPN1Q86U42 306 aaKnown RBP eCLIP13.09□□□□□ -0.31
CTNNA1-202ENST00000517533 CACNB1Q02641 598 aaPredicted RBP13.04□□□□□ -0.32
CTNNA1-202ENST00000517533 STAG3Q9UJ98 1225 aa12.99□□□□□ -0.33
CTNNA1-202ENST00000517533 SPOCK2Q92563 424 aa12.97□□□□□ -0.33
CTNNA1-202ENST00000517533 KLHL34Q8N239 644 aa12.96□□□□□ -0.33
CTNNA1-202ENST00000517533 PLCB2Q00722 1185 aa12.92□□□□□ -0.34
CTNNA1-202ENST00000517533 PLCD3Q8N3E9 789 aa12.91□□□□□ -0.34
CTNNA1-202ENST00000517533 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
CTNNA1-202ENST00000517533 MIER1Q8N108 512 aa12.89□□□□□ -0.35
CTNNA1-202ENST00000517533 ECM2O94769 699 aaPredicted RBP12.82□□□□□ -0.36
CTNNA1-202ENST00000517533 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
CTNNA1-202ENST00000517533 RGL2O15211 777 aa12.8□□□□□ -0.36
CTNNA1-202ENST00000517533 HAP1P54257 671 aaPredicted RBP12.71□□□□□ -0.37
CTNNA1-202ENST00000517533 CIZ1Q9ULV3 898 aaPredicted RBP12.67□□□□□ -0.38
CTNNA1-202ENST00000517533 BBXQ8WY36 941 aaPredicted RBP12.64□□□□□ -0.39
CTNNA1-202ENST00000517533 AKT1S1Q96B36 256 aa12.64□□□□□ -0.39
CTNNA1-202ENST00000517533 NUBP1P53384 320 aa12.62□□□□□ -0.39
CTNNA1-202ENST00000517533 ZBTB47Q9UFB7 747 aaPredicted RBP12.62□□□□□ -0.39
CTNNA1-202ENST00000517533 PLEKHG5O94827 1062 aa12.6□□□□□ -0.39
CTNNA1-202ENST00000517533 SPDYE1Q8NFV5 336 aaPredicted RBP12.6□□□□□ -0.39
CTNNA1-202ENST00000517533 CREBZFQ9NS37 354 aa12.6□□□□□ -0.39
CTNNA1-202ENST00000517533 MNX1P50219 401 aaPredicted RBP12.59□□□□□ -0.39
CTNNA1-202ENST00000517533 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
CTNNA1-202ENST00000517533 RNF25Q96BH1 459 aaPredicted RBP12.58□□□□□ -0.4
CTNNA1-202ENST00000517533 RBM42Q9BTD8 480 aaKnown RBP12.58□□□□□ -0.4
CTNNA1-202ENST00000517533 PAXIP1Q6ZW49 1069 aaPredicted RBP12.57□□□□□ -0.4
CTNNA1-202ENST00000517533 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
CTNNA1-202ENST00000517533 KDM2AQ9Y2K7 1162 aa12.54□□□□□ -0.4
CTNNA1-202ENST00000517533 CHGAP10645 457 aaKnown RBP12.52□□□□□ -0.41
CTNNA1-202ENST00000517533 CFAP44Q96MT7 982 aa12.52□□□□□ -0.41
CTNNA1-202ENST00000517533 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.52□□□□□ -0.41
CTNNA1-202ENST00000517533 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
CTNNA1-202ENST00000517533 VSIG10Q8N0Z9 540 aa12.49□□□□□ -0.41
CTNNA1-202ENST00000517533 PITPNM1O00562 1244 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms