RNA–Protein interactions for RNA: ENST00000515509.1

CXXC4-203, Transcript of CXXC finger protein 4, humanhuman

TSL 2

Gene CXXC4, Length 363 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXXC4-203ENST00000515509 AEBP2Q6ZN18 517 aaPredicted RBP23.52■■□□□ 1.36
CXXC4-203ENST00000515509 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
CXXC4-203ENST00000515509 SENP3Q9H4L4 574 aaPredicted RBP20.09■□□□□ 0.81
CXXC4-203ENST00000515509 PHF23Q9BUL5 403 aaPredicted RBP19.82■□□□□ 0.76
CXXC4-203ENST00000515509 FOXD1Q16676 465 aa18.72■□□□□ 0.59
CXXC4-203ENST00000515509 PLPPR3Q6T4P5 718 aa17.82■□□□□ 0.44
CXXC4-203ENST00000515509 MSH5O43196 834 aa17.55■□□□□ 0.4
CXXC4-203ENST00000515509 PIAS4Q8N2W9 510 aaPredicted RBP17.49■□□□□ 0.39
CXXC4-203ENST00000515509 PPP6R1Q9UPN7 881 aa17.46■□□□□ 0.39
CXXC4-203ENST00000515509 ADRA2BP18089 450 aa17.41■□□□□ 0.38
CXXC4-203ENST00000515509 POTEDQ86YR6 584 aa17.18■□□□□ 0.34
CXXC4-203ENST00000515509 MAPK8IP2Q13387 824 aaPredicted RBP16■□□□□ 0.15
CXXC4-203ENST00000515509 SCAF1Q9H7N4 1312 aaKnown RBP15.95■□□□□ 0.14
CXXC4-203ENST00000515509 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
CXXC4-203ENST00000515509 PPP4R3CPQ6ZMV5 832 aa15.61■□□□□ 0.09
CXXC4-203ENST00000515509 CNKSR2Q8WXI2 1034 aa15.33■□□□□ 0.04
CXXC4-203ENST00000515509 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
CXXC4-203ENST00000515509 DCAF8L1A6NGE4 600 aa15.29■□□□□ 0.04
CXXC4-203ENST00000515509 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
CXXC4-203ENST00000515509 CACNB1Q02641 598 aaPredicted RBP15.09■□□□□ 0.01
CXXC4-203ENST00000515509 NCBP3Q53F19 620 aaKnown RBP15.01□□□□□ -0.01
CXXC4-203ENST00000515509 RNF39Q9H2S5 420 aa14.95□□□□□ -0.02
CXXC4-203ENST00000515509 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
CXXC4-203ENST00000515509 DNAJC5BQ9UF47 199 aa14.78□□□□□ -0.04
CXXC4-203ENST00000515509 C1QBPQ07021 282 aaKnown RBP14.74□□□□□ -0.05
CXXC4-203ENST00000515509 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.61□□□□□ -0.07
CXXC4-203ENST00000515509 KCNA4P22459 653 aa14.46□□□□□ -0.09
CXXC4-203ENST00000515509 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
CXXC4-203ENST00000515509 SLC4A2P04920 1241 aa14.12□□□□□ -0.15
CXXC4-203ENST00000515509 CAPN15O75808 1086 aa14.09□□□□□ -0.15
CXXC4-203ENST00000515509 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
CXXC4-203ENST00000515509 DSG3P32926 999 aa13.99□□□□□ -0.17
CXXC4-203ENST00000515509 APLP2Q06481 763 aa13.91□□□□□ -0.18
CXXC4-203ENST00000515509 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.88□□□□□ -0.19
CXXC4-203ENST00000515509 HNRNPUL2Q1KMD3 747 aaKnown RBP13.88□□□□□ -0.19
CXXC4-203ENST00000515509 TRHP20396 242 aaPredicted RBP13.85□□□□□ -0.19
CXXC4-203ENST00000515509 ZNF219Q9P2Y4 722 aaPredicted RBP13.83□□□□□ -0.2
CXXC4-203ENST00000515509 SAMD1Q6SPF0 538 aaPredicted RBP13.79□□□□□ -0.2
CXXC4-203ENST00000515509 ABCB7O75027 752 aa13.76□□□□□ -0.21
CXXC4-203ENST00000515509 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
CXXC4-203ENST00000515509 SLC4A1APQ9BWU0 796 aaKnown RBP13.66□□□□□ -0.22
CXXC4-203ENST00000515509 FOXD4L1Q9NU39 408 aa13.52□□□□□ -0.25
CXXC4-203ENST00000515509 POTEHQ6S545 545 aa13.47□□□□□ -0.25
CXXC4-203ENST00000515509 POLA2Q14181 598 aa13.46□□□□□ -0.25
CXXC4-203ENST00000515509 RBM42Q9BTD8 480 aaKnown RBP13.37□□□□□ -0.27
CXXC4-203ENST00000515509 ATF5Q9Y2D1 282 aaPredicted RBP13.35□□□□□ -0.27
CXXC4-203ENST00000515509 ZBTB22O15209 634 aa13.28□□□□□ -0.28
CXXC4-203ENST00000515509 ZBTB12Q9Y330 459 aaPredicted RBP13.2□□□□□ -0.3
CXXC4-203ENST00000515509 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
CXXC4-203ENST00000515509 CHRDL2Q6WN34 429 aa13.08□□□□□ -0.32
CXXC4-203ENST00000515509 AKT1S1Q96B36 256 aa13.05□□□□□ -0.32
CXXC4-203ENST00000515509 OSCARQ8IYS5 282 aa13.04□□□□□ -0.32
CXXC4-203ENST00000515509 REM2Q8IYK8 340 aaPredicted RBP12.92□□□□□ -0.34
CXXC4-203ENST00000515509 FBLN2P98095 1184 aa12.86□□□□□ -0.35
CXXC4-203ENST00000515509 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
CXXC4-203ENST00000515509 SPDYE2BA6NHP3 402 aa12.78□□□□□ -0.36
CXXC4-203ENST00000515509 SPDYE6P0CI01 402 aa12.78□□□□□ -0.36
CXXC4-203ENST00000515509 SPDYE2Q495Y8 402 aa12.78□□□□□ -0.36
CXXC4-203ENST00000515509 PIP4P2Q8N4L2 257 aa12.76□□□□□ -0.37
CXXC4-203ENST00000515509 MKRN4PQ13434 485 aaPredicted RBP12.74□□□□□ -0.37
CXXC4-203ENST00000515509 FXR2P51116 673 aaKnown RBP eCLIP12.68□□□□□ -0.38
CXXC4-203ENST00000515509 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
CXXC4-203ENST00000515509 ZNF692Q9BU19 519 aaPredicted RBP12.63□□□□□ -0.39
CXXC4-203ENST00000515509 SP7Q8TDD2 431 aaPredicted RBP12.61□□□□□ -0.39
CXXC4-203ENST00000515509 SSUH2Q9Y2M2 353 aa12.6□□□□□ -0.39
CXXC4-203ENST00000515509 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
CXXC4-203ENST00000515509 HAX1O00165 279 aa12.56□□□□□ -0.4
CXXC4-203ENST00000515509 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
CXXC4-203ENST00000515509 EHMT2Q96KQ7 1210 aa12.49□□□□□ -0.41
CXXC4-203ENST00000515509 PRKAR2AP13861 404 aaKnown RBP12.46□□□□□ -0.41
CXXC4-203ENST00000515509 PABPN1Q86U42 306 aaKnown RBP eCLIP12.44□□□□□ -0.42
CXXC4-203ENST00000515509 EVX2Q03828 476 aa12.37□□□□□ -0.43
CXXC4-203ENST00000515509 PRR29P0C7W0 189 aa12.34□□□□□ -0.43
CXXC4-203ENST00000515509 CHADLQ6NUI6 762 aa12.32□□□□□ -0.44
CXXC4-203ENST00000515509 C19orf67A6NJJ6 358 aa12.27□□□□□ -0.45
CXXC4-203ENST00000515509 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
CXXC4-203ENST00000515509 FARP1Q9Y4F1 1045 aaPredicted RBP12.12□□□□□ -0.47
CXXC4-203ENST00000515509 GABBR2O75899 941 aa12.11□□□□□ -0.47
CXXC4-203ENST00000515509 STAG3Q9UJ98 1225 aa12.09□□□□□ -0.47
CXXC4-203ENST00000515509 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
CXXC4-203ENST00000515509 CREBZFQ9NS37 354 aa12.02□□□□□ -0.49
CXXC4-203ENST00000515509 CLCN6P51797 869 aa11.9□□□□□ -0.5
CXXC4-203ENST00000515509 ZRANB1Q9UGI0 708 aa11.89□□□□□ -0.51
CXXC4-203ENST00000515509 ZNF579Q8NAF0 562 aaKnown RBP11.87□□□□□ -0.51
CXXC4-203ENST00000515509 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
CXXC4-203ENST00000515509 LHX8Q68G74 356 aa11.82□□□□□ -0.52
CXXC4-203ENST00000515509 PROM2Q8N271 834 aa11.82□□□□□ -0.52
CXXC4-203ENST00000515509 NPM1P06748 294 aaKnown RBP eCLIP11.81□□□□□ -0.52
CXXC4-203ENST00000515509 PAK3O75914 559 aaPredicted RBP11.8□□□□□ -0.52
CXXC4-203ENST00000515509 MNX1P50219 401 aaPredicted RBP11.79□□□□□ -0.52
CXXC4-203ENST00000515509 DCBLD2Q96PD2 775 aa11.79□□□□□ -0.52
CXXC4-203ENST00000515509 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
CXXC4-203ENST00000515509 PHF12Q96QT6 1004 aa11.72□□□□□ -0.53
CXXC4-203ENST00000515509 PLEKHG5O94827 1062 aa11.59□□□□□ -0.55
CXXC4-203ENST00000515509 TSPYL2Q9H2G4 693 aaPredicted RBP11.59□□□□□ -0.55
CXXC4-203ENST00000515509 MIER1Q8N108 512 aa11.58□□□□□ -0.56
CXXC4-203ENST00000515509 MS4A3Q96HJ5 214 aa11.57□□□□□ -0.56
CXXC4-203ENST00000515509 CCDC61Q9Y6R9 512 aa11.53□□□□□ -0.56
CXXC4-203ENST00000515509 FKBP8Q14318 412 aa11.5□□□□□ -0.57
CXXC4-203ENST00000515509 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms