RNA–Protein interactions for RNA: ENST00000514893.5

NEDD4-211, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene NEDD4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-211ENST00000514893 AEBP2Q6ZN18 517 aaPredicted RBP30.63■■■□□ 2.49
NEDD4-211ENST00000514893 CHIC1Q5VXU3 224 aa29.13■■■□□ 2.25
NEDD4-211ENST00000514893 SENP3Q9H4L4 574 aaPredicted RBP26.27■■□□□ 1.8
NEDD4-211ENST00000514893 PHF23Q9BUL5 403 aaPredicted RBP25.9■■□□□ 1.74
NEDD4-211ENST00000514893 FOXD1Q16676 465 aa24.41■■□□□ 1.5
NEDD4-211ENST00000514893 PLPPR3Q6T4P5 718 aa23.31■■□□□ 1.32
NEDD4-211ENST00000514893 MSH5O43196 834 aa22.97■■□□□ 1.27
NEDD4-211ENST00000514893 PIAS4Q8N2W9 510 aaPredicted RBP22.83■■□□□ 1.25
NEDD4-211ENST00000514893 PPP6R1Q9UPN7 881 aa22.77■■□□□ 1.24
NEDD4-211ENST00000514893 ADRA2BP18089 450 aa22.72■■□□□ 1.23
NEDD4-211ENST00000514893 POTEDQ86YR6 584 aa22.4■■□□□ 1.18
NEDD4-211ENST00000514893 SCAF1Q9H7N4 1312 aaKnown RBP20.96■□□□□ 0.95
NEDD4-211ENST00000514893 MAPK8IP2Q13387 824 aaPredicted RBP20.87■□□□□ 0.93
NEDD4-211ENST00000514893 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
NEDD4-211ENST00000514893 PPP4R3CPQ6ZMV5 832 aa20.39■□□□□ 0.85
NEDD4-211ENST00000514893 CNKSR2Q8WXI2 1034 aa20.05■□□□□ 0.8
NEDD4-211ENST00000514893 HOXD11P31277 338 aaPredicted RBP20.01■□□□□ 0.79
NEDD4-211ENST00000514893 DCAF8L1A6NGE4 600 aa19.98■□□□□ 0.79
NEDD4-211ENST00000514893 RNF216Q9NWF9 866 aaPredicted RBP19.88■□□□□ 0.77
NEDD4-211ENST00000514893 CACNB1Q02641 598 aaPredicted RBP19.73■□□□□ 0.75
NEDD4-211ENST00000514893 NCBP3Q53F19 620 aaKnown RBP19.7■□□□□ 0.74
NEDD4-211ENST00000514893 RNF39Q9H2S5 420 aa19.53■□□□□ 0.72
NEDD4-211ENST00000514893 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
NEDD4-211ENST00000514893 C1QBPQ07021 282 aaKnown RBP19.32■□□□□ 0.68
NEDD4-211ENST00000514893 NPM3O75607 178 aaKnown RBP19.27■□□□□ 0.68
NEDD4-211ENST00000514893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.13■□□□□ 0.65
NEDD4-211ENST00000514893 KCNA4P22459 653 aa18.84■□□□□ 0.61
NEDD4-211ENST00000514893 U3KPZ7 1027 aaPredicted RBP18.61■□□□□ 0.57
NEDD4-211ENST00000514893 CAPN15O75808 1086 aa18.41■□□□□ 0.54
NEDD4-211ENST00000514893 SLC4A2P04920 1241 aa18.4■□□□□ 0.54
NEDD4-211ENST00000514893 SPINK5Q9NQ38 1064 aaPredicted RBP18.35■□□□□ 0.53
NEDD4-211ENST00000514893 APLP2Q06481 763 aa18.28■□□□□ 0.52
NEDD4-211ENST00000514893 DSG3P32926 999 aa18.27■□□□□ 0.52
NEDD4-211ENST00000514893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.24■□□□□ 0.51
NEDD4-211ENST00000514893 HNRNPUL2Q1KMD3 747 aaKnown RBP18.24■□□□□ 0.51
NEDD4-211ENST00000514893 SAMD1Q6SPF0 538 aaPredicted RBP18.1■□□□□ 0.49
NEDD4-211ENST00000514893 TRHP20396 242 aaPredicted RBP18.09■□□□□ 0.49
NEDD4-211ENST00000514893 ZNF219Q9P2Y4 722 aaPredicted RBP18.09■□□□□ 0.49
NEDD4-211ENST00000514893 ABCB7O75027 752 aa17.91■□□□□ 0.46
NEDD4-211ENST00000514893 MYCNP04198 464 aaPredicted RBP17.88■□□□□ 0.45
NEDD4-211ENST00000514893 SLC4A1APQ9BWU0 796 aaKnown RBP17.84■□□□□ 0.45
NEDD4-211ENST00000514893 FOXD4L1Q9NU39 408 aa17.66■□□□□ 0.42
NEDD4-211ENST00000514893 POLA2Q14181 598 aa17.61■□□□□ 0.41
NEDD4-211ENST00000514893 POTEHQ6S545 545 aa17.59■□□□□ 0.41
NEDD4-211ENST00000514893 RBM42Q9BTD8 480 aaKnown RBP17.53■□□□□ 0.4
NEDD4-211ENST00000514893 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
NEDD4-211ENST00000514893 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
NEDD4-211ENST00000514893 ZBTB22O15209 634 aa17.26■□□□□ 0.35
NEDD4-211ENST00000514893 ATXN8OSP0DMR3 200 aa17.18■□□□□ 0.34
NEDD4-211ENST00000514893 CHRDL2Q6WN34 429 aa17.1■□□□□ 0.33
NEDD4-211ENST00000514893 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
NEDD4-211ENST00000514893 OSCARQ8IYS5 282 aa16.97■□□□□ 0.31
NEDD4-211ENST00000514893 REM2Q8IYK8 340 aaPredicted RBP16.89■□□□□ 0.29
NEDD4-211ENST00000514893 FBLN2P98095 1184 aa16.86■□□□□ 0.29
NEDD4-211ENST00000514893 SPDYE2BA6NHP3 402 aa16.73■□□□□ 0.27
NEDD4-211ENST00000514893 SPDYE6P0CI01 402 aa16.73■□□□□ 0.27
NEDD4-211ENST00000514893 SPDYE2Q495Y8 402 aa16.73■□□□□ 0.27
NEDD4-211ENST00000514893 PITPNM1O00562 1244 aa16.67■□□□□ 0.26
NEDD4-211ENST00000514893 PIP4P2Q8N4L2 257 aa16.66■□□□□ 0.26
NEDD4-211ENST00000514893 MKRN4PQ13434 485 aaPredicted RBP16.58■□□□□ 0.24
NEDD4-211ENST00000514893 FXR2P51116 673 aaKnown RBP eCLIP16.57■□□□□ 0.24
NEDD4-211ENST00000514893 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
NEDD4-211ENST00000514893 CSRNP3Q8WYN3 585 aa16.49■□□□□ 0.23
NEDD4-211ENST00000514893 SPDYE1Q8NFV5 336 aaPredicted RBP16.47■□□□□ 0.23
NEDD4-211ENST00000514893 SP7Q8TDD2 431 aaPredicted RBP16.47■□□□□ 0.23
NEDD4-211ENST00000514893 HAX1O00165 279 aa16.44■□□□□ 0.22
NEDD4-211ENST00000514893 SSUH2Q9Y2M2 353 aa16.44■□□□□ 0.22
NEDD4-211ENST00000514893 CLEC11AQ9Y240 323 aa16.41■□□□□ 0.22
NEDD4-211ENST00000514893 PRKAR2AP13861 404 aaKnown RBP16.28■□□□□ 0.2
NEDD4-211ENST00000514893 PABPN1Q86U42 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
NEDD4-211ENST00000514893 EHMT2Q96KQ7 1210 aa16.25■□□□□ 0.19
NEDD4-211ENST00000514893 PRR29P0C7W0 189 aa16.18■□□□□ 0.18
NEDD4-211ENST00000514893 EVX2Q03828 476 aa16.11■□□□□ 0.17
NEDD4-211ENST00000514893 C19orf67A6NJJ6 358 aa16.04■□□□□ 0.16
NEDD4-211ENST00000514893 CHADLQ6NUI6 762 aa16.03■□□□□ 0.16
NEDD4-211ENST00000514893 STAG3Q9UJ98 1225 aa15.89■□□□□ 0.13
NEDD4-211ENST00000514893 SPDYE4A6NLX3 237 aa15.86■□□□□ 0.13
NEDD4-211ENST00000514893 FARP1Q9Y4F1 1045 aaPredicted RBP15.86■□□□□ 0.13
NEDD4-211ENST00000514893 GABBR2O75899 941 aa15.82■□□□□ 0.12
NEDD4-211ENST00000514893 CD44P16070 742 aaKnown RBP15.76■□□□□ 0.11
NEDD4-211ENST00000514893 CLCN6P51797 869 aa15.7■□□□□ 0.1
NEDD4-211ENST00000514893 CREBZFQ9NS37 354 aa15.67■□□□□ 0.1
NEDD4-211ENST00000514893 ZRANB1Q9UGI0 708 aa15.55■□□□□ 0.08
NEDD4-211ENST00000514893 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
NEDD4-211ENST00000514893 ZNF579Q8NAF0 562 aaKnown RBP15.5■□□□□ 0.07
NEDD4-211ENST00000514893 PAK3O75914 559 aaPredicted RBP15.48■□□□□ 0.07
NEDD4-211ENST00000514893 LHX8Q68G74 356 aa15.47■□□□□ 0.07
NEDD4-211ENST00000514893 DCBLD2Q96PD2 775 aa15.45■□□□□ 0.06
NEDD4-211ENST00000514893 POTEIP0CG38 1075 aa15.41■□□□□ 0.06
NEDD4-211ENST00000514893 PROM2Q8N271 834 aa15.41■□□□□ 0.06
NEDD4-211ENST00000514893 MNX1P50219 401 aaPredicted RBP15.37■□□□□ 0.05
NEDD4-211ENST00000514893 GALR2O43603 387 aaPredicted RBP15.28■□□□□ 0.04
NEDD4-211ENST00000514893 PLEKHG5O94827 1062 aa15.26■□□□□ 0.03
NEDD4-211ENST00000514893 PHF12Q96QT6 1004 aa15.26■□□□□ 0.03
NEDD4-211ENST00000514893 MIER1Q8N108 512 aa15.21■□□□□ 0.03
NEDD4-211ENST00000514893 TSPYL2Q9H2G4 693 aaPredicted RBP15.14■□□□□ 0.01
NEDD4-211ENST00000514893 PLCD3Q8N3E9 789 aa15.06■□□□□ 0
NEDD4-211ENST00000514893 MS4A3Q96HJ5 214 aa15.05■□□□□ -0
NEDD4-211ENST00000514893 CCDC61Q9Y6R9 512 aa15.04■□□□□ -0
NEDD4-211ENST00000514893 ZBTB47Q9UFB7 747 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms