RNA–Protein interactions for RNA: ENST00000514572.1

RFC1-216, Transcript of replication factor C subunit 1, humanhuman

TSL 2

Gene RFC1, Length 584 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-216ENST00000514572 AEBP2Q6ZN18 517 aaPredicted RBP21.37■■□□□ 1.01
RFC1-216ENST00000514572 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
RFC1-216ENST00000514572 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
RFC1-216ENST00000514572 PHF23Q9BUL5 403 aaPredicted RBP18.02■□□□□ 0.48
RFC1-216ENST00000514572 FOXD1Q16676 465 aa16.94■□□□□ 0.3
RFC1-216ENST00000514572 PLPPR3Q6T4P5 718 aa16.79■□□□□ 0.28
RFC1-216ENST00000514572 PPP6R1Q9UPN7 881 aa15.98■□□□□ 0.15
RFC1-216ENST00000514572 ADRA2BP18089 450 aa15.93■□□□□ 0.14
RFC1-216ENST00000514572 PIAS4Q8N2W9 510 aaPredicted RBP15.85■□□□□ 0.13
RFC1-216ENST00000514572 MSH5O43196 834 aa15.76■□□□□ 0.11
RFC1-216ENST00000514572 KCNA4P22459 653 aa15.34■□□□□ 0.05
RFC1-216ENST00000514572 POTEDQ86YR6 584 aa15.14■□□□□ 0.01
RFC1-216ENST00000514572 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
RFC1-216ENST00000514572 PPP4R3CPQ6ZMV5 832 aa14.87□□□□□ -0.03
RFC1-216ENST00000514572 SLC4A1APQ9BWU0 796 aaKnown RBP14.68□□□□□ -0.06
RFC1-216ENST00000514572 CSRNP3Q8WYN3 585 aa14.63□□□□□ -0.07
RFC1-216ENST00000514572 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
RFC1-216ENST00000514572 MAPK8IP2Q13387 824 aaPredicted RBP14.6□□□□□ -0.07
RFC1-216ENST00000514572 SCAF1Q9H7N4 1312 aaKnown RBP14.54□□□□□ -0.08
RFC1-216ENST00000514572 NPM3O75607 178 aaKnown RBP14.51□□□□□ -0.09
RFC1-216ENST00000514572 DMRT2Q9Y5R5 561 aa14.44□□□□□ -0.1
RFC1-216ENST00000514572 CNKSR2Q8WXI2 1034 aa14.31□□□□□ -0.12
RFC1-216ENST00000514572 ZBTB22O15209 634 aa14.19□□□□□ -0.14
RFC1-216ENST00000514572 DNAJC5BQ9UF47 199 aa14.14□□□□□ -0.15
RFC1-216ENST00000514572 HOXD11P31277 338 aaPredicted RBP13.97□□□□□ -0.17
RFC1-216ENST00000514572 FOXD4L1Q9NU39 408 aa13.91□□□□□ -0.18
RFC1-216ENST00000514572 RNF216Q9NWF9 866 aaPredicted RBP13.9□□□□□ -0.18
RFC1-216ENST00000514572 DCAF8L1A6NGE4 600 aa13.85□□□□□ -0.19
RFC1-216ENST00000514572 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
RFC1-216ENST00000514572 RNF39Q9H2S5 420 aa13.48□□□□□ -0.25
RFC1-216ENST00000514572 CACNB1Q02641 598 aaPredicted RBP13.46□□□□□ -0.25
RFC1-216ENST00000514572 ATXN8OSP0DMR3 200 aa13.38□□□□□ -0.27
RFC1-216ENST00000514572 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
RFC1-216ENST00000514572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.32□□□□□ -0.285e-7■■□□□ 11.5
RFC1-216ENST00000514572 C1QBPQ07021 282 aaKnown RBP13.28□□□□□ -0.28
RFC1-216ENST00000514572 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
RFC1-216ENST00000514572 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
RFC1-216ENST00000514572 FKBP8Q14318 412 aa13.1□□□□□ -0.31
RFC1-216ENST00000514572 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
RFC1-216ENST00000514572 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
RFC1-216ENST00000514572 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
RFC1-216ENST00000514572 SAMD1Q6SPF0 538 aaPredicted RBP12.89□□□□□ -0.35
RFC1-216ENST00000514572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
RFC1-216ENST00000514572 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
RFC1-216ENST00000514572 SPINK5Q9NQ38 1064 aaPredicted RBP12.83□□□□□ -0.36
RFC1-216ENST00000514572 CAPN15O75808 1086 aa12.79□□□□□ -0.36
RFC1-216ENST00000514572 DSG3P32926 999 aa12.68□□□□□ -0.38
RFC1-216ENST00000514572 APLP2Q06481 763 aa12.67□□□□□ -0.38
RFC1-216ENST00000514572 ZNF219Q9P2Y4 722 aaPredicted RBP12.66□□□□□ -0.38
RFC1-216ENST00000514572 TRHP20396 242 aaPredicted RBP12.63□□□□□ -0.39
RFC1-216ENST00000514572 ABCB7O75027 752 aa12.52□□□□□ -0.41
RFC1-216ENST00000514572 PROM2Q8N271 834 aa12.5□□□□□ -0.41
RFC1-216ENST00000514572 MKRN4PQ13434 485 aaPredicted RBP12.49□□□□□ -0.41
RFC1-216ENST00000514572 SPDYE4A6NLX3 237 aa12.45□□□□□ -0.42
RFC1-216ENST00000514572 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
RFC1-216ENST00000514572 POLA2Q14181 598 aa12.33□□□□□ -0.44
RFC1-216ENST00000514572 VASPP50552 380 aaPredicted RBP12.3□□□□□ -0.44
RFC1-216ENST00000514572 FBLN2P98095 1184 aa12.28□□□□□ -0.44
RFC1-216ENST00000514572 IFNLR1Q8IU57 520 aaPredicted RBP12.21□□□□□ -0.45
RFC1-216ENST00000514572 PLCB2Q00722 1185 aa12.15□□□□□ -0.46
RFC1-216ENST00000514572 PKD2Q13563 968 aa12.09□□□□□ -0.47
RFC1-216ENST00000514572 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
RFC1-216ENST00000514572 RBM42Q9BTD8 480 aaKnown RBP12.06□□□□□ -0.48
RFC1-216ENST00000514572 OSCARQ8IYS5 282 aa11.92□□□□□ -0.5
RFC1-216ENST00000514572 POTEHQ6S545 545 aa11.9□□□□□ -0.5
RFC1-216ENST00000514572 SSUH2Q9Y2M2 353 aa11.9□□□□□ -0.5
RFC1-216ENST00000514572 SPOCK2Q92563 424 aa11.89□□□□□ -0.51
RFC1-216ENST00000514572 DCAF8L2P0C7V8 631 aa11.86□□□□□ -0.51
RFC1-216ENST00000514572 HAP1P54257 671 aaPredicted RBP11.86□□□□□ -0.51
RFC1-216ENST00000514572 STAG3Q9UJ98 1225 aa11.86□□□□□ -0.51
RFC1-216ENST00000514572 SPDYE2BA6NHP3 402 aa11.85□□□□□ -0.51
RFC1-216ENST00000514572 SPDYE6P0CI01 402 aa11.85□□□□□ -0.51
RFC1-216ENST00000514572 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
RFC1-216ENST00000514572 ZNF692Q9BU19 519 aaPredicted RBP11.85□□□□□ -0.51
RFC1-216ENST00000514572 AKT1S1Q96B36 256 aa11.84□□□□□ -0.51
RFC1-216ENST00000514572 VSIG10Q8N0Z9 540 aa11.79□□□□□ -0.52
RFC1-216ENST00000514572 KLHL34Q8N239 644 aa11.79□□□□□ -0.52
RFC1-216ENST00000514572 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
RFC1-216ENST00000514572 CHRDL2Q6WN34 429 aa11.77□□□□□ -0.53
RFC1-216ENST00000514572 BBXQ8WY36 941 aaPredicted RBP11.77□□□□□ -0.53
RFC1-216ENST00000514572 ECM2O94769 699 aaPredicted RBP11.76□□□□□ -0.53
RFC1-216ENST00000514572 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
RFC1-216ENST00000514572 REM2Q8IYK8 340 aaPredicted RBP11.74□□□□□ -0.53
RFC1-216ENST00000514572 RGL2O15211 777 aa11.71□□□□□ -0.53
RFC1-216ENST00000514572 PLCD3Q8N3E9 789 aa11.71□□□□□ -0.53
RFC1-216ENST00000514572 BCANQ96GW7 911 aa11.71□□□□□ -0.53
RFC1-216ENST00000514572 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.68□□□□□ -0.54
RFC1-216ENST00000514572 KDM2AQ9Y2K7 1162 aa11.66□□□□□ -0.54
RFC1-216ENST00000514572 MIER1Q8N108 512 aa11.65□□□□□ -0.54
RFC1-216ENST00000514572 PITPNM1O00562 1244 aa11.61□□□□□ -0.55
RFC1-216ENST00000514572 PAXIP1Q6ZW49 1069 aaPredicted RBP11.61□□□□□ -0.55
RFC1-216ENST00000514572 ZBTB47Q9UFB7 747 aaPredicted RBP11.58□□□□□ -0.56
RFC1-216ENST00000514572 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.56
RFC1-216ENST00000514572 CFAP44Q96MT7 982 aa11.55□□□□□ -0.56
RFC1-216ENST00000514572 PIP4P2Q8N4L2 257 aa11.53□□□□□ -0.56
RFC1-216ENST00000514572 SPRYD3Q8NCJ5 442 aa11.53□□□□□ -0.56
RFC1-216ENST00000514572 TRIM41Q8WV44 630 aa11.53□□□□□ -0.56
RFC1-216ENST00000514572 PRKCSHP14314 528 aaPredicted RBP11.52□□□□□ -0.57
RFC1-216ENST00000514572 CIZ1Q9ULV3 898 aaPredicted RBP11.51□□□□□ -0.57
RFC1-216ENST00000514572 PLEKHG5O94827 1062 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms