RNA–Protein interactions for RNA: ENST00000513946.1

PROM1-216, Transcript of prominin 1, humanhuman

TSL 3

Gene PROM1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-216ENST00000513946 AEBP2Q6ZN18 517 aaPredicted RBP20.96■□□□□ 0.95
PROM1-216ENST00000513946 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
PROM1-216ENST00000513946 PHF23Q9BUL5 403 aaPredicted RBP17.72■□□□□ 0.43
PROM1-216ENST00000513946 SENP3Q9H4L4 574 aaPredicted RBP17.72■□□□□ 0.43
PROM1-216ENST00000513946 FOXD1Q16676 465 aa16.57■□□□□ 0.24
PROM1-216ENST00000513946 PLPPR3Q6T4P5 718 aa16.13■□□□□ 0.17
PROM1-216ENST00000513946 PPP6R1Q9UPN7 881 aa15.74■□□□□ 0.11
PROM1-216ENST00000513946 ADRA2BP18089 450 aa15.65■□□□□ 0.1
PROM1-216ENST00000513946 PIAS4Q8N2W9 510 aaPredicted RBP15.45■□□□□ 0.06
PROM1-216ENST00000513946 MSH5O43196 834 aa15.31■□□□□ 0.04
PROM1-216ENST00000513946 POTEDQ86YR6 584 aa14.79□□□□□ -0.04
PROM1-216ENST00000513946 MAPK8IP2Q13387 824 aaPredicted RBP14.33□□□□□ -0.12
PROM1-216ENST00000513946 SCAF1Q9H7N4 1312 aaKnown RBP14.22□□□□□ -0.13
PROM1-216ENST00000513946 PPP4R3CPQ6ZMV5 832 aa14.21□□□□□ -0.13
PROM1-216ENST00000513946 DMRT2Q9Y5R5 561 aa14.14□□□□□ -0.15
PROM1-216ENST00000513946 CNKSR2Q8WXI2 1034 aa13.86□□□□□ -0.19
PROM1-216ENST00000513946 HOXD11P31277 338 aaPredicted RBP13.76□□□□□ -0.21
PROM1-216ENST00000513946 RNF216Q9NWF9 866 aaPredicted RBP13.68□□□□□ -0.22
PROM1-216ENST00000513946 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
PROM1-216ENST00000513946 NPM3O75607 178 aaKnown RBP13.55□□□□□ -0.24
PROM1-216ENST00000513946 KCNA4P22459 653 aa13.51□□□□□ -0.25
PROM1-216ENST00000513946 DCAF8L1A6NGE4 600 aa13.42□□□□□ -0.26
PROM1-216ENST00000513946 DNAJC5BQ9UF47 199 aa13.27□□□□□ -0.29
PROM1-216ENST00000513946 RNF39Q9H2S5 420 aa13.15□□□□□ -0.3
PROM1-216ENST00000513946 CACNB1Q02641 598 aaPredicted RBP13□□□□□ -0.33
PROM1-216ENST00000513946 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13□□□□□ -0.33
PROM1-216ENST00000513946 C1QBPQ07021 282 aaKnown RBP12.94□□□□□ -0.34
PROM1-216ENST00000513946 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
PROM1-216ENST00000513946 U3KPZ7 1027 aaPredicted RBP12.83□□□□□ -0.36
PROM1-216ENST00000513946 SLC4A1APQ9BWU0 796 aaKnown RBP12.75□□□□□ -0.37
PROM1-216ENST00000513946 SPINK5Q9NQ38 1064 aaPredicted RBP12.57□□□□□ -0.4
PROM1-216ENST00000513946 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
PROM1-216ENST00000513946 ZBTB22O15209 634 aa12.47□□□□□ -0.41
PROM1-216ENST00000513946 MYCNP04198 464 aaPredicted RBP12.46□□□□□ -0.41
PROM1-216ENST00000513946 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.45□□□□□ -0.42
PROM1-216ENST00000513946 CAPN15O75808 1086 aa12.45□□□□□ -0.42
PROM1-216ENST00000513946 HNRNPUL2Q1KMD3 747 aaKnown RBP12.45□□□□□ -0.42
PROM1-216ENST00000513946 DSG3P32926 999 aa12.42□□□□□ -0.42
PROM1-216ENST00000513946 SAMD1Q6SPF0 538 aaPredicted RBP12.42□□□□□ -0.42
PROM1-216ENST00000513946 APLP2Q06481 763 aa12.37□□□□□ -0.43
PROM1-216ENST00000513946 TRHP20396 242 aaPredicted RBP12.33□□□□□ -0.44
PROM1-216ENST00000513946 ZNF219Q9P2Y4 722 aaPredicted RBP12.3□□□□□ -0.44
PROM1-216ENST00000513946 ATF5Q9Y2D1 282 aaPredicted RBP12.26□□□□□ -0.45
PROM1-216ENST00000513946 ABCB7O75027 752 aa12.21□□□□□ -0.45
PROM1-216ENST00000513946 CSRNP3Q8WYN3 585 aa12.14□□□□□ -0.47
PROM1-216ENST00000513946 ATXN8OSP0DMR3 200 aa12.1□□□□□ -0.47
PROM1-216ENST00000513946 POLA2Q14181 598 aa12.1□□□□□ -0.47
PROM1-216ENST00000513946 EHMT2Q96KQ7 1210 aa11.98□□□□□ -0.49
PROM1-216ENST00000513946 ZBTB12Q9Y330 459 aaPredicted RBP11.78□□□□□ -0.52
PROM1-216ENST00000513946 RBM42Q9BTD8 480 aaKnown RBP11.74□□□□□ -0.53
PROM1-216ENST00000513946 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
PROM1-216ENST00000513946 OSCARQ8IYS5 282 aa11.67□□□□□ -0.54
PROM1-216ENST00000513946 FBLN2P98095 1184 aa11.61□□□□□ -0.55
PROM1-216ENST00000513946 POTEHQ6S545 545 aa11.59□□□□□ -0.55
PROM1-216ENST00000513946 AKT1S1Q96B36 256 aa11.58□□□□□ -0.56
PROM1-216ENST00000513946 SPDYE2BA6NHP3 402 aa11.51□□□□□ -0.57
PROM1-216ENST00000513946 SPDYE6P0CI01 402 aa11.51□□□□□ -0.57
PROM1-216ENST00000513946 SPDYE2Q495Y8 402 aa11.51□□□□□ -0.57
PROM1-216ENST00000513946 REM2Q8IYK8 340 aaPredicted RBP11.49□□□□□ -0.57
PROM1-216ENST00000513946 SSUH2Q9Y2M2 353 aa11.43□□□□□ -0.58
PROM1-216ENST00000513946 CHRDL2Q6WN34 429 aa11.42□□□□□ -0.58
PROM1-216ENST00000513946 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
PROM1-216ENST00000513946 PITPNM1O00562 1244 aa11.34□□□□□ -0.59
PROM1-216ENST00000513946 FXR2P51116 673 aaKnown RBP eCLIP11.25□□□□□ -0.61
PROM1-216ENST00000513946 PABPN1Q86U42 306 aaKnown RBP eCLIP11.25□□□□□ -0.61
PROM1-216ENST00000513946 PIP4P2Q8N4L2 257 aa11.23□□□□□ -0.61
PROM1-216ENST00000513946 SPDYE1Q8NFV5 336 aaPredicted RBP11.22□□□□□ -0.61
PROM1-216ENST00000513946 SPDYE4A6NLX3 237 aa11.19□□□□□ -0.62
PROM1-216ENST00000513946 CLEC11AQ9Y240 323 aa11.17□□□□□ -0.62
PROM1-216ENST00000513946 PROM2Q8N271 834 aa11.06□□□□□ -0.64
PROM1-216ENST00000513946 PRR29P0C7W0 189 aa11.05□□□□□ -0.64
PROM1-216ENST00000513946 PRKAR2AP13861 404 aaKnown RBP11.04□□□□□ -0.64
PROM1-216ENST00000513946 CHADLQ6NUI6 762 aa11□□□□□ -0.65
PROM1-216ENST00000513946 STAG3Q9UJ98 1225 aa10.98□□□□□ -0.65
PROM1-216ENST00000513946 EVX2Q03828 476 aa10.93□□□□□ -0.66
PROM1-216ENST00000513946 HAX1O00165 279 aa10.91□□□□□ -0.66
PROM1-216ENST00000513946 FKBP8Q14318 412 aa10.9□□□□□ -0.66
PROM1-216ENST00000513946 SP7Q8TDD2 431 aaPredicted RBP10.9□□□□□ -0.66
PROM1-216ENST00000513946 CREBZFQ9NS37 354 aa10.9□□□□□ -0.66
PROM1-216ENST00000513946 C19orf67A6NJJ6 358 aa10.87□□□□□ -0.67
PROM1-216ENST00000513946 FARP1Q9Y4F1 1045 aaPredicted RBP10.85□□□□□ -0.67
PROM1-216ENST00000513946 MNX1P50219 401 aaPredicted RBP10.79□□□□□ -0.68
PROM1-216ENST00000513946 CD44P16070 742 aaKnown RBP10.68□□□□□ -0.7
PROM1-216ENST00000513946 GABBR2O75899 941 aa10.64□□□□□ -0.71
PROM1-216ENST00000513946 MIER1Q8N108 512 aa10.64□□□□□ -0.71
PROM1-216ENST00000513946 NPM1P06748 294 aaKnown RBP eCLIP10.62□□□□□ -0.71
PROM1-216ENST00000513946 ZRANB1Q9UGI0 708 aa10.58□□□□□ -0.72
PROM1-216ENST00000513946 ZNF579Q8NAF0 562 aaKnown RBP10.56□□□□□ -0.72
PROM1-216ENST00000513946 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
PROM1-216ENST00000513946 PLCD3Q8N3E9 789 aa10.54□□□□□ -0.72
PROM1-216ENST00000513946 PLEKHG5O94827 1062 aa10.51□□□□□ -0.73
PROM1-216ENST00000513946 CLCN6P51797 869 aa10.51□□□□□ -0.73
PROM1-216ENST00000513946 NUBP1P53384 320 aa10.48□□□□□ -0.73
PROM1-216ENST00000513946 RASEFQ8IZ41 740 aa10.48□□□□□ -0.73
PROM1-216ENST00000513946 POTEIP0CG38 1075 aa10.47□□□□□ -0.73
PROM1-216ENST00000513946 PHF12Q96QT6 1004 aa10.47□□□□□ -0.73
PROM1-216ENST00000513946 PAK3O75914 559 aaPredicted RBP10.46□□□□□ -0.73
PROM1-216ENST00000513946 VASPP50552 380 aaPredicted RBP10.46□□□□□ -0.73
PROM1-216ENST00000513946 TSPYL2Q9H2G4 693 aaPredicted RBP10.46□□□□□ -0.73
PROM1-216ENST00000513946 CCDC61Q9Y6R9 512 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms