RNA–Protein interactions for RNA: ENST00000513316.1

RAB3C-204, Transcript of RAB3C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB3C, Length 423 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3C-204ENST00000513316 AEBP2Q6ZN18 517 aaPredicted RBP27.18■■□□□ 1.94
RAB3C-204ENST00000513316 CHIC1Q5VXU3 224 aa26.74■■□□□ 1.87
RAB3C-204ENST00000513316 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
RAB3C-204ENST00000513316 SENP3Q9H4L4 574 aaPredicted RBP23.14■■□□□ 1.29
RAB3C-204ENST00000513316 PLPPR3Q6T4P5 718 aa21.81■■□□□ 1.08
RAB3C-204ENST00000513316 FOXD1Q16676 465 aa21.39■■□□□ 1.01
RAB3C-204ENST00000513316 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
RAB3C-204ENST00000513316 ADRA2BP18089 450 aa20.64■□□□□ 0.89
RAB3C-204ENST00000513316 PIAS4Q8N2W9 510 aaPredicted RBP20.22■□□□□ 0.83
RAB3C-204ENST00000513316 MSH5O43196 834 aa19.75■□□□□ 0.75
RAB3C-204ENST00000513316 PPP4R3CPQ6ZMV5 832 aa19.19■□□□□ 0.66
RAB3C-204ENST00000513316 SCAF1Q9H7N4 1312 aaKnown RBP19.01■□□□□ 0.63
RAB3C-204ENST00000513316 KCNA4P22459 653 aa18.86■□□□□ 0.61
RAB3C-204ENST00000513316 NCBP3Q53F19 620 aaKnown RBP18.79■□□□□ 0.6
RAB3C-204ENST00000513316 MAPK8IP2Q13387 824 aaPredicted RBP18.67■□□□□ 0.58
RAB3C-204ENST00000513316 CNKSR2Q8WXI2 1034 aa18.67■□□□□ 0.58
RAB3C-204ENST00000513316 DMRT2Q9Y5R5 561 aa18.47■□□□□ 0.55
RAB3C-204ENST00000513316 NPM3O75607 178 aaKnown RBP18.45■□□□□ 0.54
RAB3C-204ENST00000513316 RNF216Q9NWF9 866 aaPredicted RBP18.27■□□□□ 0.52
RAB3C-204ENST00000513316 HOXD11P31277 338 aaPredicted RBP18.15■□□□□ 0.5
RAB3C-204ENST00000513316 SLC4A1APQ9BWU0 796 aaKnown RBP18.02■□□□□ 0.48
RAB3C-204ENST00000513316 DNAJC5BQ9UF47 199 aa18.01■□□□□ 0.47
RAB3C-204ENST00000513316 POTEDQ86YR6 584 aa17.68■□□□□ 0.42
RAB3C-204ENST00000513316 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
RAB3C-204ENST00000513316 EHMT2Q96KQ7 1210 aa17.59■□□□□ 0.41
RAB3C-204ENST00000513316 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
RAB3C-204ENST00000513316 FOXD4L1Q9NU39 408 aa17.38■□□□□ 0.37
RAB3C-204ENST00000513316 SLC4A2P04920 1241 aa17.37■□□□□ 0.37
RAB3C-204ENST00000513316 ZBTB22O15209 634 aa17.33■□□□□ 0.36
RAB3C-204ENST00000513316 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.36
RAB3C-204ENST00000513316 MYCNP04198 464 aaPredicted RBP17.09■□□□□ 0.33
RAB3C-204ENST00000513316 U3KPZ7 1027 aaPredicted RBP16.99■□□□□ 0.31
RAB3C-204ENST00000513316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
RAB3C-204ENST00000513316 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
RAB3C-204ENST00000513316 RNF39Q9H2S5 420 aa16.9■□□□□ 0.3
RAB3C-204ENST00000513316 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
RAB3C-204ENST00000513316 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
RAB3C-204ENST00000513316 C1QBPQ07021 282 aaKnown RBP16.75■□□□□ 0.27
RAB3C-204ENST00000513316 APLP2Q06481 763 aa16.74■□□□□ 0.27
RAB3C-204ENST00000513316 ATF5Q9Y2D1 282 aaPredicted RBP16.52■□□□□ 0.24
RAB3C-204ENST00000513316 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
RAB3C-204ENST00000513316 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
RAB3C-204ENST00000513316 CAPN15O75808 1086 aa16.4■□□□□ 0.22
RAB3C-204ENST00000513316 TRHP20396 242 aaPredicted RBP16.35■□□□□ 0.21
RAB3C-204ENST00000513316 CACNB1Q02641 598 aaPredicted RBP16.35■□□□□ 0.21
RAB3C-204ENST00000513316 POLA2Q14181 598 aa16.13■□□□□ 0.17
RAB3C-204ENST00000513316 DSG3P32926 999 aa16.12■□□□□ 0.17
RAB3C-204ENST00000513316 ABCB7O75027 752 aa16.07■□□□□ 0.16
RAB3C-204ENST00000513316 ZBTB12Q9Y330 459 aaPredicted RBP15.97■□□□□ 0.15
RAB3C-204ENST00000513316 FBLN2P98095 1184 aa15.92■□□□□ 0.14
RAB3C-204ENST00000513316 MKRN4PQ13434 485 aaPredicted RBP15.83■□□□□ 0.12
RAB3C-204ENST00000513316 FKBP8Q14318 412 aa15.69■□□□□ 0.1
RAB3C-204ENST00000513316 SPDYE4A6NLX3 237 aa15.58■□□□□ 0.08
RAB3C-204ENST00000513316 OSCARQ8IYS5 282 aa15.56■□□□□ 0.08
RAB3C-204ENST00000513316 SPDYE2BA6NHP3 402 aa15.53■□□□□ 0.08
RAB3C-204ENST00000513316 SPDYE6P0CI01 402 aa15.53■□□□□ 0.08
RAB3C-204ENST00000513316 SPDYE2Q495Y8 402 aa15.53■□□□□ 0.08
RAB3C-204ENST00000513316 ZNF692Q9BU19 519 aaPredicted RBP15.44■□□□□ 0.06
RAB3C-204ENST00000513316 RBM42Q9BTD8 480 aaKnown RBP15.43■□□□□ 0.06
RAB3C-204ENST00000513316 SSUH2Q9Y2M2 353 aa15.39■□□□□ 0.05
RAB3C-204ENST00000513316 PROM2Q8N271 834 aa15.38■□□□□ 0.05
RAB3C-204ENST00000513316 AKT1S1Q96B36 256 aa15.24■□□□□ 0.03
RAB3C-204ENST00000513316 PABPN1Q86U42 306 aaKnown RBP eCLIP15.22■□□□□ 0.03
RAB3C-204ENST00000513316 FBXO3Q9UK99 471 aa15.2■□□□□ 0.02
RAB3C-204ENST00000513316 STAG3Q9UJ98 1225 aa15.09■□□□□ 0.01
RAB3C-204ENST00000513316 REM2Q8IYK8 340 aaPredicted RBP15.05■□□□□ -0
RAB3C-204ENST00000513316 SPDYE1Q8NFV5 336 aaPredicted RBP15.03■□□□□ -0
RAB3C-204ENST00000513316 VASPP50552 380 aaPredicted RBP14.92□□□□□ -0.02
RAB3C-204ENST00000513316 CLEC11AQ9Y240 323 aa14.88□□□□□ -0.03
RAB3C-204ENST00000513316 PITPNM1O00562 1244 aa14.86□□□□□ -0.03
RAB3C-204ENST00000513316 PRR29P0C7W0 189 aa14.81□□□□□ -0.04
RAB3C-204ENST00000513316 PLEKHG5O94827 1062 aa14.76□□□□□ -0.05
RAB3C-204ENST00000513316 MIER1Q8N108 512 aa14.76□□□□□ -0.05
RAB3C-204ENST00000513316 PLCD3Q8N3E9 789 aa14.76□□□□□ -0.05
RAB3C-204ENST00000513316 IFNLR1Q8IU57 520 aaPredicted RBP14.7□□□□□ -0.06
RAB3C-204ENST00000513316 CHRDL2Q6WN34 429 aa14.67□□□□□ -0.06
RAB3C-204ENST00000513316 ZBTB47Q9UFB7 747 aaPredicted RBP14.67□□□□□ -0.06
RAB3C-204ENST00000513316 KLHL34Q8N239 644 aa14.63□□□□□ -0.07
RAB3C-204ENST00000513316 CREBZFQ9NS37 354 aa14.63□□□□□ -0.07
RAB3C-204ENST00000513316 AMER1Q5JTC6 1135 aaPredicted RBP14.61□□□□□ -0.07
RAB3C-204ENST00000513316 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
RAB3C-204ENST00000513316 SPOCK2Q92563 424 aa14.55□□□□□ -0.08
RAB3C-204ENST00000513316 PRKAR2AP13861 404 aaKnown RBP14.5□□□□□ -0.09
RAB3C-204ENST00000513316 MNX1P50219 401 aaPredicted RBP14.5□□□□□ -0.09
RAB3C-204ENST00000513316 PIP4P2Q8N4L2 257 aa14.5□□□□□ -0.09
RAB3C-204ENST00000513316 CHADLQ6NUI6 762 aa14.48□□□□□ -0.09
RAB3C-204ENST00000513316 NPM1P06748 294 aaKnown RBP eCLIP14.46□□□□□ -0.09
RAB3C-204ENST00000513316 RTN4Q9NQC3 1192 aaKnown RBP14.46□□□□□ -0.09
RAB3C-204ENST00000513316 FARP1Q9Y4F1 1045 aaPredicted RBP14.41□□□□□ -0.1
RAB3C-204ENST00000513316 NUBP1P53384 320 aa14.37□□□□□ -0.11
RAB3C-204ENST00000513316 GSE1Q14687 1217 aa14.3□□□□□ -0.12
RAB3C-204ENST00000513316 FAM212AQ96EL1 285 aa14.29□□□□□ -0.12
RAB3C-204ENST00000513316 PKD2Q13563 968 aa14.26□□□□□ -0.13
RAB3C-204ENST00000513316 CIZ1Q9ULV3 898 aaPredicted RBP14.26□□□□□ -0.13
RAB3C-204ENST00000513316 RASEFQ8IZ41 740 aa14.25□□□□□ -0.13
RAB3C-204ENST00000513316 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
RAB3C-204ENST00000513316 DCAF8Q5TAQ9 597 aa14.23□□□□□ -0.13
RAB3C-204ENST00000513316 PAK3O75914 559 aaPredicted RBP14.17□□□□□ -0.14
RAB3C-204ENST00000513316 ECM2O94769 699 aaPredicted RBP14.17□□□□□ -0.14
RAB3C-204ENST00000513316 TSPYL2Q9H2G4 693 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 170.1 ms