RNA–Protein interactions for RNA: ENST00000513144.1

SERF1B-206, Transcript of small EDRK-rich factor 1B, humanhuman

TSL 2

Gene SERF1B, Length 632 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SERF1B-206ENST00000513144 AEBP2Q6ZN18 517 aaPredicted RBP27.19■■□□□ 1.94
SERF1B-206ENST00000513144 CHIC1Q5VXU3 224 aa26.28■■□□□ 1.8
SERF1B-206ENST00000513144 SENP3Q9H4L4 574 aaPredicted RBP23.21■■□□□ 1.31
SERF1B-206ENST00000513144 PHF23Q9BUL5 403 aaPredicted RBP23.12■■□□□ 1.29
SERF1B-206ENST00000513144 POTEDQ86YR6 584 aa22.54■■□□□ 1.2
SERF1B-206ENST00000513144 FOXD1Q16676 465 aa21.73■■□□□ 1.07
SERF1B-206ENST00000513144 PLPPR3Q6T4P5 718 aa21.22■□□□□ 0.99
SERF1B-206ENST00000513144 MSH5O43196 834 aa20.91■□□□□ 0.94
SERF1B-206ENST00000513144 PPP6R1Q9UPN7 881 aa20.49■□□□□ 0.87
SERF1B-206ENST00000513144 ADRA2BP18089 450 aa20.46■□□□□ 0.87
SERF1B-206ENST00000513144 PIAS4Q8N2W9 510 aaPredicted RBP20.18■□□□□ 0.82
SERF1B-206ENST00000513144 CACNB1Q02641 598 aaPredicted RBP18.7■□□□□ 0.58
SERF1B-206ENST00000513144 PPP4R3CPQ6ZMV5 832 aa18.69■□□□□ 0.58
SERF1B-206ENST00000513144 MAPK8IP2Q13387 824 aaPredicted RBP18.65■□□□□ 0.58
SERF1B-206ENST00000513144 SCAF1Q9H7N4 1312 aaKnown RBP18.65■□□□□ 0.58
SERF1B-206ENST00000513144 DMRT2Q9Y5R5 561 aa18.38■□□□□ 0.53
SERF1B-206ENST00000513144 CNKSR2Q8WXI2 1034 aa18.21■□□□□ 0.51
SERF1B-206ENST00000513144 KCNA4P22459 653 aa18.11■□□□□ 0.49
SERF1B-206ENST00000513144 NCBP3Q53F19 620 aaKnown RBP18.09■□□□□ 0.49
SERF1B-206ENST00000513144 HOXD11P31277 338 aaPredicted RBP17.9■□□□□ 0.46
SERF1B-206ENST00000513144 RNF216Q9NWF9 866 aaPredicted RBP17.9■□□□□ 0.46
SERF1B-206ENST00000513144 NPM3O75607 178 aaKnown RBP17.87■□□□□ 0.45
SERF1B-206ENST00000513144 RNF39Q9H2S5 420 aa17.69■□□□□ 0.42
SERF1B-206ENST00000513144 DCAF8L1A6NGE4 600 aa17.62■□□□□ 0.41
SERF1B-206ENST00000513144 POTEHQ6S545 545 aa17.42■□□□□ 0.38
SERF1B-206ENST00000513144 C1QBPQ07021 282 aaKnown RBP17.4■□□□□ 0.38
SERF1B-206ENST00000513144 DNAJC5BQ9UF47 199 aa17.36■□□□□ 0.37
SERF1B-206ENST00000513144 SLC4A1APQ9BWU0 796 aaKnown RBP17.15■□□□□ 0.34
SERF1B-206ENST00000513144 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.32
SERF1B-206ENST00000513144 SLC4A2P04920 1241 aa16.95■□□□□ 0.3
SERF1B-206ENST00000513144 U3KPZ7 1027 aaPredicted RBP16.78■□□□□ 0.28
SERF1B-206ENST00000513144 ZBTB22O15209 634 aa16.7■□□□□ 0.26
SERF1B-206ENST00000513144 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
SERF1B-206ENST00000513144 EHMT2Q96KQ7 1210 aa16.53■□□□□ 0.24
SERF1B-206ENST00000513144 MYCNP04198 464 aaPredicted RBP16.49■□□□□ 0.23
SERF1B-206ENST00000513144 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
SERF1B-206ENST00000513144 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
SERF1B-206ENST00000513144 HNRNPUL2Q1KMD3 747 aaKnown RBP16.43■□□□□ 0.22
SERF1B-206ENST00000513144 SPINK5Q9NQ38 1064 aaPredicted RBP16.4■□□□□ 0.22
SERF1B-206ENST00000513144 SAMD1Q6SPF0 538 aaPredicted RBP16.37■□□□□ 0.21
SERF1B-206ENST00000513144 CAPN15O75808 1086 aa16.33■□□□□ 0.2
SERF1B-206ENST00000513144 APLP2Q06481 763 aa16.3■□□□□ 0.2
SERF1B-206ENST00000513144 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
SERF1B-206ENST00000513144 ZNF219Q9P2Y4 722 aaPredicted RBP16.15■□□□□ 0.18
SERF1B-206ENST00000513144 ATF5Q9Y2D1 282 aaPredicted RBP16.14■□□□□ 0.17
SERF1B-206ENST00000513144 DSG3P32926 999 aa16.11■□□□□ 0.17
SERF1B-206ENST00000513144 ATXN8OSP0DMR3 200 aa16.04■□□□□ 0.16
SERF1B-206ENST00000513144 ABCB7O75027 752 aa16.01■□□□□ 0.15
SERF1B-206ENST00000513144 POLA2Q14181 598 aa15.87■□□□□ 0.13
SERF1B-206ENST00000513144 SP7Q8TDD2 431 aaPredicted RBP15.73■□□□□ 0.11
SERF1B-206ENST00000513144 CHRDL2Q6WN34 429 aa15.6■□□□□ 0.09
SERF1B-206ENST00000513144 ZBTB12Q9Y330 459 aaPredicted RBP15.53■□□□□ 0.08
SERF1B-206ENST00000513144 RBM42Q9BTD8 480 aaKnown RBP15.47■□□□□ 0.07
SERF1B-206ENST00000513144 MKRN4PQ13434 485 aaPredicted RBP15.42■□□□□ 0.06
SERF1B-206ENST00000513144 FBLN2P98095 1184 aa15.4■□□□□ 0.06
SERF1B-206ENST00000513144 OSCARQ8IYS5 282 aa15.35■□□□□ 0.05
SERF1B-206ENST00000513144 SPDYE2BA6NHP3 402 aa15.13■□□□□ 0.01
SERF1B-206ENST00000513144 SPDYE6P0CI01 402 aa15.13■□□□□ 0.01
SERF1B-206ENST00000513144 SPDYE2Q495Y8 402 aa15.13■□□□□ 0.01
SERF1B-206ENST00000513144 AKT1S1Q96B36 256 aa15.1■□□□□ 0.01
SERF1B-206ENST00000513144 ZNF692Q9BU19 519 aaPredicted RBP15.05■□□□□ -0
SERF1B-206ENST00000513144 HAX1O00165 279 aa15.03■□□□□ -0
SERF1B-206ENST00000513144 SSUH2Q9Y2M2 353 aa14.99□□□□□ -0.01
SERF1B-206ENST00000513144 REM2Q8IYK8 340 aaPredicted RBP14.97□□□□□ -0.01
SERF1B-206ENST00000513144 SPDYE4A6NLX3 237 aa14.93□□□□□ -0.02
SERF1B-206ENST00000513144 PIP4P2Q8N4L2 257 aa14.93□□□□□ -0.02
SERF1B-206ENST00000513144 PLSCR2Q9NRY7 297 aa14.87□□□□□ -0.03
SERF1B-206ENST00000513144 PABPN1Q86U42 306 aaKnown RBP eCLIP14.85□□□□□ -0.03
SERF1B-206ENST00000513144 FKBP8Q14318 412 aa14.83□□□□□ -0.04
SERF1B-206ENST00000513144 PITPNM1O00562 1244 aa14.81□□□□□ -0.04
SERF1B-206ENST00000513144 LHX8Q68G74 356 aa14.75□□□□□ -0.05
SERF1B-206ENST00000513144 SPDYE1Q8NFV5 336 aaPredicted RBP14.74□□□□□ -0.05
SERF1B-206ENST00000513144 PROM2Q8N271 834 aa14.73□□□□□ -0.05
SERF1B-206ENST00000513144 CLEC11AQ9Y240 323 aa14.72□□□□□ -0.05
SERF1B-206ENST00000513144 EVX2Q03828 476 aa14.69□□□□□ -0.06
SERF1B-206ENST00000513144 FXR2P51116 673 aaKnown RBP eCLIP14.66□□□□□ -0.06
SERF1B-206ENST00000513144 PRR29P0C7W0 189 aa14.54□□□□□ -0.08
SERF1B-206ENST00000513144 STAG3Q9UJ98 1225 aa14.52□□□□□ -0.09
SERF1B-206ENST00000513144 PRKAR2AP13861 404 aaKnown RBP14.43□□□□□ -0.1
SERF1B-206ENST00000513144 CHADLQ6NUI6 762 aa14.41□□□□□ -0.1
SERF1B-206ENST00000513144 GABBR2O75899 941 aa14.33□□□□□ -0.12
SERF1B-206ENST00000513144 CREBZFQ9NS37 354 aa14.3□□□□□ -0.12
SERF1B-206ENST00000513144 FBXO3Q9UK99 471 aa14.27□□□□□ -0.13
SERF1B-206ENST00000513144 C19orf67A6NJJ6 358 aa14.23□□□□□ -0.13
SERF1B-206ENST00000513144 FARP1Q9Y4F1 1045 aaPredicted RBP14.22□□□□□ -0.13
SERF1B-206ENST00000513144 MIER1Q8N108 512 aa14.17□□□□□ -0.14
SERF1B-206ENST00000513144 MNX1P50219 401 aaPredicted RBP14.14□□□□□ -0.15
SERF1B-206ENST00000513144 VASPP50552 380 aaPredicted RBP14.14□□□□□ -0.15
SERF1B-206ENST00000513144 PLCD3Q8N3E9 789 aa14.11□□□□□ -0.15
SERF1B-206ENST00000513144 PLEKHG5O94827 1062 aa14.07□□□□□ -0.16
SERF1B-206ENST00000513144 NPM1P06748 294 aaKnown RBP eCLIP14.03□□□□□ -0.16
SERF1B-206ENST00000513144 CD44P16070 742 aaKnown RBP14□□□□□ -0.17
SERF1B-206ENST00000513144 IFNLR1Q8IU57 520 aaPredicted RBP14□□□□□ -0.17
SERF1B-206ENST00000513144 POTEIP0CG38 1075 aa13.98□□□□□ -0.17
SERF1B-206ENST00000513144 POTEMA6NI47 508 aa13.94□□□□□ -0.18
SERF1B-206ENST00000513144 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
SERF1B-206ENST00000513144 ZRANB1Q9UGI0 708 aa13.89□□□□□ -0.19
SERF1B-206ENST00000513144 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
SERF1B-206ENST00000513144 PCDH10Q9P2E7 1040 aa13.88□□□□□ -0.19
SERF1B-206ENST00000513144 NUBP1P53384 320 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms