RNA–Protein interactions for RNA: ENST00000512726.1

RFC1-214, Transcript of replication factor C subunit 1, humanhuman

TSL 2

Gene RFC1, Length 752 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-214ENST00000512726 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
RFC1-214ENST00000512726 AEBP2Q6ZN18 517 aaPredicted RBP26.79■■□□□ 1.88
RFC1-214ENST00000512726 PHF23Q9BUL5 403 aaPredicted RBP23.98■■□□□ 1.43
RFC1-214ENST00000512726 SENP3Q9H4L4 574 aaPredicted RBP22.64■■□□□ 1.21
RFC1-214ENST00000512726 PLPPR3Q6T4P5 718 aa22.57■■□□□ 1.2
RFC1-214ENST00000512726 ADRA2BP18089 450 aa21.03■□□□□ 0.96
RFC1-214ENST00000512726 FOXD1Q16676 465 aa20.84■□□□□ 0.93
RFC1-214ENST00000512726 PPP6R1Q9UPN7 881 aa20.83■□□□□ 0.93
RFC1-214ENST00000512726 KCNA4P22459 653 aa20.65■□□□□ 0.9
RFC1-214ENST00000512726 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
RFC1-214ENST00000512726 PPP4R3CPQ6ZMV5 832 aa20■□□□□ 0.79
RFC1-214ENST00000512726 PIAS4Q8N2W9 510 aaPredicted RBP19.94■□□□□ 0.78
RFC1-214ENST00000512726 SLC4A1APQ9BWU0 796 aaKnown RBP19.9■□□□□ 0.78
RFC1-214ENST00000512726 NCBP3Q53F19 620 aaKnown RBP19.82■□□□□ 0.76
RFC1-214ENST00000512726 CSRNP3Q8WYN3 585 aa19.75■□□□□ 0.75
RFC1-214ENST00000512726 NPM3O75607 178 aaKnown RBP19.45■□□□□ 0.7
RFC1-214ENST00000512726 CNKSR2Q8WXI2 1034 aa19.23■□□□□ 0.67
RFC1-214ENST00000512726 SCAF1Q9H7N4 1312 aaKnown RBP19.2■□□□□ 0.66
RFC1-214ENST00000512726 ZBTB22O15209 634 aa18.99■□□□□ 0.63
RFC1-214ENST00000512726 MSH5O43196 834 aa18.88■□□□□ 0.61
RFC1-214ENST00000512726 FOXD4L1Q9NU39 408 aa18.76■□□□□ 0.59
RFC1-214ENST00000512726 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
RFC1-214ENST00000512726 MAPK8IP2Q13387 824 aaPredicted RBP18.64■□□□□ 0.57
RFC1-214ENST00000512726 RNF216Q9NWF9 866 aaPredicted RBP18.6■□□□□ 0.57
RFC1-214ENST00000512726 HOXD11P31277 338 aaPredicted RBP18.24■□□□□ 0.51
RFC1-214ENST00000512726 DMRT2Q9Y5R5 561 aa18.21■□□□□ 0.51
RFC1-214ENST00000512726 SLC4A2P04920 1241 aa18.11■□□□□ 0.49
RFC1-214ENST00000512726 AMER1Q5JTC6 1135 aaPredicted RBP18.06■□□□□ 0.48
RFC1-214ENST00000512726 ATXN8OSP0DMR3 200 aa18.03■□□□□ 0.48
RFC1-214ENST00000512726 MYCNP04198 464 aaPredicted RBP17.99■□□□□ 0.47
RFC1-214ENST00000512726 RTN4Q9NQC3 1192 aaKnown RBP17.98■□□□□ 0.47
RFC1-214ENST00000512726 SLC24A1O60721 1099 aa17.94■□□□□ 0.46
RFC1-214ENST00000512726 FKBP8Q14318 412 aa17.82■□□□□ 0.44
RFC1-214ENST00000512726 POTEDQ86YR6 584 aa17.54■□□□□ 0.4
RFC1-214ENST00000512726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.42■□□□□ 0.38
RFC1-214ENST00000512726 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
RFC1-214ENST00000512726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.42■□□□□ 0.381e-6■■■■■ 31.4
RFC1-214ENST00000512726 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
RFC1-214ENST00000512726 SAMD1Q6SPF0 538 aaPredicted RBP17.38■□□□□ 0.37
RFC1-214ENST00000512726 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
RFC1-214ENST00000512726 U3KPZ7 1027 aaPredicted RBP17.2■□□□□ 0.34
RFC1-214ENST00000512726 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
RFC1-214ENST00000512726 APLP2Q06481 763 aa17.01■□□□□ 0.31
RFC1-214ENST00000512726 FBXO3Q9UK99 471 aa16.96■□□□□ 0.31
RFC1-214ENST00000512726 SPDYE4A6NLX3 237 aa16.85■□□□□ 0.29
RFC1-214ENST00000512726 FBLN2P98095 1184 aa16.67■□□□□ 0.26
RFC1-214ENST00000512726 MKRN4PQ13434 485 aaPredicted RBP16.67■□□□□ 0.26
RFC1-214ENST00000512726 PROM2Q8N271 834 aa16.67■□□□□ 0.26
RFC1-214ENST00000512726 VASPP50552 380 aaPredicted RBP16.65■□□□□ 0.26
RFC1-214ENST00000512726 PLCB2Q00722 1185 aa16.61■□□□□ 0.25
RFC1-214ENST00000512726 TRHP20396 242 aaPredicted RBP16.51■□□□□ 0.23
RFC1-214ENST00000512726 IFNLR1Q8IU57 520 aaPredicted RBP16.48■□□□□ 0.23
RFC1-214ENST00000512726 DCAF8L2P0C7V8 631 aa16.46■□□□□ 0.23
RFC1-214ENST00000512726 POLA2Q14181 598 aa16.46■□□□□ 0.23
RFC1-214ENST00000512726 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
RFC1-214ENST00000512726 HAP1P54257 671 aaPredicted RBP16.38■□□□□ 0.21
RFC1-214ENST00000512726 CAPN15O75808 1086 aa16.35■□□□□ 0.21
RFC1-214ENST00000512726 ZBTB12Q9Y330 459 aaPredicted RBP16.32■□□□□ 0.2
RFC1-214ENST00000512726 PKD2Q13563 968 aa16.31■□□□□ 0.2
RFC1-214ENST00000512726 RNF39Q9H2S5 420 aa16.24■□□□□ 0.19
RFC1-214ENST00000512726 VSIG10Q8N0Z9 540 aa16.18■□□□□ 0.18
RFC1-214ENST00000512726 BCANQ96GW7 911 aa16.18■□□□□ 0.18
RFC1-214ENST00000512726 KLHL34Q8N239 644 aa16.17■□□□□ 0.18
RFC1-214ENST00000512726 SPOCK2Q92563 424 aa16.17■□□□□ 0.18
RFC1-214ENST00000512726 C1QBPQ07021 282 aaKnown RBP16.14■□□□□ 0.17
RFC1-214ENST00000512726 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.11■□□□□ 0.17
RFC1-214ENST00000512726 ABCB7O75027 752 aa16.1■□□□□ 0.17
RFC1-214ENST00000512726 STAG3Q9UJ98 1225 aa16.09■□□□□ 0.17
RFC1-214ENST00000512726 ECM2O94769 699 aaPredicted RBP16.08■□□□□ 0.16
RFC1-214ENST00000512726 BBXQ8WY36 941 aaPredicted RBP16.07■□□□□ 0.16
RFC1-214ENST00000512726 ZNF692Q9BU19 519 aaPredicted RBP16.04■□□□□ 0.16
RFC1-214ENST00000512726 PLCD3Q8N3E9 789 aa15.99■□□□□ 0.15
RFC1-214ENST00000512726 PAXIP1Q6ZW49 1069 aaPredicted RBP15.94■□□□□ 0.14
RFC1-214ENST00000512726 SPDYE2BA6NHP3 402 aa15.93■□□□□ 0.14
RFC1-214ENST00000512726 SPDYE6P0CI01 402 aa15.93■□□□□ 0.14
RFC1-214ENST00000512726 SPDYE2Q495Y8 402 aa15.93■□□□□ 0.14
RFC1-214ENST00000512726 NPM1P06748 294 aaKnown RBP eCLIP15.91■□□□□ 0.14
RFC1-214ENST00000512726 TAOK2Q9UL54 1235 aa15.91■□□□□ 0.14
RFC1-214ENST00000512726 CFAP44Q96MT7 982 aa15.9■□□□□ 0.14
RFC1-214ENST00000512726 SSUH2Q9Y2M2 353 aa15.89■□□□□ 0.13
RFC1-214ENST00000512726 MIER1Q8N108 512 aa15.88■□□□□ 0.13
RFC1-214ENST00000512726 RGL2O15211 777 aa15.85■□□□□ 0.13
RFC1-214ENST00000512726 PRKCSHP14314 528 aaPredicted RBP15.85■□□□□ 0.13
RFC1-214ENST00000512726 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
RFC1-214ENST00000512726 KDM2AQ9Y2K7 1162 aa15.85■□□□□ 0.13
RFC1-214ENST00000512726 PABPN1Q86U42 306 aaKnown RBP eCLIP15.84■□□□□ 0.13
RFC1-214ENST00000512726 SPRYD3Q8NCJ5 442 aa15.81■□□□□ 0.12
RFC1-214ENST00000512726 DSG3P32926 999 aa15.8■□□□□ 0.12
RFC1-214ENST00000512726 PLEKHG5O94827 1062 aa15.79■□□□□ 0.12
RFC1-214ENST00000512726 ZBTB47Q9UFB7 747 aaPredicted RBP15.77■□□□□ 0.12
RFC1-214ENST00000512726 CIZ1Q9ULV3 898 aaPredicted RBP15.74■□□□□ 0.11
RFC1-214ENST00000512726 CHGAP10645 457 aaKnown RBP15.69■□□□□ 0.1
RFC1-214ENST00000512726 TPRNQ4KMQ1 711 aa15.67■□□□□ 0.1
RFC1-214ENST00000512726 TSHZ2Q9NRE2 1034 aa15.67■□□□□ 0.1
RFC1-214ENST00000512726 TRIM41Q8WV44 630 aa15.66■□□□□ 0.1
RFC1-214ENST00000512726 HS6ST3Q8IZP7 471 aa15.53■□□□□ 0.08
RFC1-214ENST00000512726 GSE1Q14687 1217 aa15.49■□□□□ 0.07
RFC1-214ENST00000512726 NBR1Q14596 966 aa15.45■□□□□ 0.06
RFC1-214ENST00000512726 DNAJC5Q9H3Z4 198 aa15.45■□□□□ 0.06
RFC1-214ENST00000512726 RNF25Q96BH1 459 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms