RNA–Protein interactions for RNA: ENST00000512094.5

NPHP3-210, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 721 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-210ENST00000512094 AEBP2Q6ZN18 517 aaPredicted RBP36.34■■■■□ 3.41
NPHP3-210ENST00000512094 CHIC1Q5VXU3 224 aa34.39■■■■□ 3.1
NPHP3-210ENST00000512094 SENP3Q9H4L4 574 aaPredicted RBP31.04■■■□□ 2.56
NPHP3-210ENST00000512094 PHF23Q9BUL5 403 aaPredicted RBP30.6■■■□□ 2.49
NPHP3-210ENST00000512094 FOXD1Q16676 465 aa28.94■■■□□ 2.22
NPHP3-210ENST00000512094 PLPPR3Q6T4P5 718 aa27.42■■□□□ 1.98
NPHP3-210ENST00000512094 MSH5O43196 834 aa27.15■■□□□ 1.94
NPHP3-210ENST00000512094 PIAS4Q8N2W9 510 aaPredicted RBP27.04■■□□□ 1.92
NPHP3-210ENST00000512094 PPP6R1Q9UPN7 881 aa26.93■■□□□ 1.9
NPHP3-210ENST00000512094 ADRA2BP18089 450 aa26.86■■□□□ 1.89
NPHP3-210ENST00000512094 POTEDQ86YR6 584 aa26.73■■□□□ 1.87
NPHP3-210ENST00000512094 MAPK8IP2Q13387 824 aaPredicted RBP24.71■■□□□ 1.55
NPHP3-210ENST00000512094 SCAF1Q9H7N4 1312 aaKnown RBP24.59■■□□□ 1.53
NPHP3-210ENST00000512094 DMRT2Q9Y5R5 561 aa24.58■■□□□ 1.53
NPHP3-210ENST00000512094 PPP4R3CPQ6ZMV5 832 aa24.02■■□□□ 1.44
NPHP3-210ENST00000512094 DCAF8L1A6NGE4 600 aa23.64■■□□□ 1.37
NPHP3-210ENST00000512094 HOXD11P31277 338 aaPredicted RBP23.61■■□□□ 1.37
NPHP3-210ENST00000512094 CNKSR2Q8WXI2 1034 aa23.59■■□□□ 1.37
NPHP3-210ENST00000512094 RNF216Q9NWF9 866 aaPredicted RBP23.41■■□□□ 1.34
NPHP3-210ENST00000512094 CACNB1Q02641 598 aaPredicted RBP23.39■■□□□ 1.33
NPHP3-210ENST00000512094 RNF39Q9H2S5 420 aa23.14■■□□□ 1.29
NPHP3-210ENST00000512094 NCBP3Q53F19 620 aaKnown RBP23.06■■□□□ 1.28
NPHP3-210ENST00000512094 DNAJC5BQ9UF47 199 aa22.8■■□□□ 1.24
NPHP3-210ENST00000512094 C1QBPQ07021 282 aaKnown RBP22.79■■□□□ 1.24
NPHP3-210ENST00000512094 NPM3O75607 178 aaKnown RBP22.72■■□□□ 1.23
NPHP3-210ENST00000512094 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.55■■□□□ 1.2
NPHP3-210ENST00000512094 KCNA4P22459 653 aa22.16■■□□□ 1.14
NPHP3-210ENST00000512094 U3KPZ7 1027 aaPredicted RBP22.04■■□□□ 1.12
NPHP3-210ENST00000512094 CAPN15O75808 1086 aa21.76■■□□□ 1.07
NPHP3-210ENST00000512094 SPINK5Q9NQ38 1064 aaPredicted RBP21.76■■□□□ 1.07
NPHP3-210ENST00000512094 SLC4A2P04920 1241 aa21.72■■□□□ 1.07
NPHP3-210ENST00000512094 DSG3P32926 999 aa21.62■■□□□ 1.05
NPHP3-210ENST00000512094 APLP2Q06481 763 aa21.42■■□□□ 1.02
NPHP3-210ENST00000512094 TRHP20396 242 aaPredicted RBP21.37■■□□□ 1.01
NPHP3-210ENST00000512094 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.36■■□□□ 1.01
NPHP3-210ENST00000512094 HNRNPUL2Q1KMD3 747 aaKnown RBP21.36■■□□□ 1.01
NPHP3-210ENST00000512094 ZNF219Q9P2Y4 722 aaPredicted RBP21.32■■□□□ 1
NPHP3-210ENST00000512094 ABCB7O75027 752 aa21.25■□□□□ 0.99
NPHP3-210ENST00000512094 SAMD1Q6SPF0 538 aaPredicted RBP21.25■□□□□ 0.99
NPHP3-210ENST00000512094 MYCNP04198 464 aaPredicted RBP21.03■□□□□ 0.96
NPHP3-210ENST00000512094 POTEHQ6S545 545 aa20.92■□□□□ 0.94
NPHP3-210ENST00000512094 SLC4A1APQ9BWU0 796 aaKnown RBP20.91■□□□□ 0.94
NPHP3-210ENST00000512094 POLA2Q14181 598 aa20.74■□□□□ 0.91
NPHP3-210ENST00000512094 FOXD4L1Q9NU39 408 aa20.74■□□□□ 0.91
NPHP3-210ENST00000512094 RBM42Q9BTD8 480 aaKnown RBP20.66■□□□□ 0.9
NPHP3-210ENST00000512094 ATF5Q9Y2D1 282 aaPredicted RBP20.54■□□□□ 0.88
NPHP3-210ENST00000512094 ZBTB22O15209 634 aa20.38■□□□□ 0.85
NPHP3-210ENST00000512094 ZBTB12Q9Y330 459 aaPredicted RBP20.32■□□□□ 0.84
NPHP3-210ENST00000512094 CHRDL2Q6WN34 429 aa20.26■□□□□ 0.83
NPHP3-210ENST00000512094 AKT1S1Q96B36 256 aa20.14■□□□□ 0.81
NPHP3-210ENST00000512094 OSCARQ8IYS5 282 aa20.11■□□□□ 0.81
NPHP3-210ENST00000512094 ATXN8OSP0DMR3 200 aa20.08■□□□□ 0.81
NPHP3-210ENST00000512094 REM2Q8IYK8 340 aaPredicted RBP19.95■□□□□ 0.78
NPHP3-210ENST00000512094 FBLN2P98095 1184 aa19.78■□□□□ 0.76
NPHP3-210ENST00000512094 PITPNM1O00562 1244 aa19.76■□□□□ 0.75
NPHP3-210ENST00000512094 PIP4P2Q8N4L2 257 aa19.75■□□□□ 0.75
NPHP3-210ENST00000512094 SPDYE2BA6NHP3 402 aa19.68■□□□□ 0.74
NPHP3-210ENST00000512094 SPDYE6P0CI01 402 aa19.68■□□□□ 0.74
NPHP3-210ENST00000512094 SPDYE2Q495Y8 402 aa19.68■□□□□ 0.74
NPHP3-210ENST00000512094 FXR2P51116 673 aaKnown RBP eCLIP19.59■□□□□ 0.73
NPHP3-210ENST00000512094 MKRN4PQ13434 485 aaPredicted RBP19.59■□□□□ 0.73
NPHP3-210ENST00000512094 SP7Q8TDD2 431 aaPredicted RBP19.56■□□□□ 0.72
NPHP3-210ENST00000512094 HAX1O00165 279 aa19.43■□□□□ 0.7
NPHP3-210ENST00000512094 ZNF692Q9BU19 519 aaPredicted RBP19.42■□□□□ 0.7
NPHP3-210ENST00000512094 SSUH2Q9Y2M2 353 aa19.39■□□□□ 0.69
NPHP3-210ENST00000512094 SPDYE1Q8NFV5 336 aaPredicted RBP19.37■□□□□ 0.69
NPHP3-210ENST00000512094 CLEC11AQ9Y240 323 aa19.37■□□□□ 0.69
NPHP3-210ENST00000512094 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
NPHP3-210ENST00000512094 PRKAR2AP13861 404 aaKnown RBP19.25■□□□□ 0.67
NPHP3-210ENST00000512094 EVX2Q03828 476 aa19.15■□□□□ 0.66
NPHP3-210ENST00000512094 PABPN1Q86U42 306 aaKnown RBP eCLIP19.14■□□□□ 0.65
NPHP3-210ENST00000512094 EHMT2Q96KQ7 1210 aa19.03■□□□□ 0.64
NPHP3-210ENST00000512094 PRR29P0C7W0 189 aa19.01■□□□□ 0.63
NPHP3-210ENST00000512094 CHADLQ6NUI6 762 aa19.01■□□□□ 0.63
NPHP3-210ENST00000512094 C19orf67A6NJJ6 358 aa18.97■□□□□ 0.63
NPHP3-210ENST00000512094 GABBR2O75899 941 aa18.73■□□□□ 0.59
NPHP3-210ENST00000512094 FARP1Q9Y4F1 1045 aaPredicted RBP18.69■□□□□ 0.58
NPHP3-210ENST00000512094 CD44P16070 742 aaKnown RBP18.64■□□□□ 0.57
NPHP3-210ENST00000512094 SPDYE4A6NLX3 237 aa18.61■□□□□ 0.57
NPHP3-210ENST00000512094 STAG3Q9UJ98 1225 aa18.57■□□□□ 0.56
NPHP3-210ENST00000512094 CREBZFQ9NS37 354 aa18.49■□□□□ 0.55
NPHP3-210ENST00000512094 CLCN6P51797 869 aa18.37■□□□□ 0.53
NPHP3-210ENST00000512094 ZRANB1Q9UGI0 708 aa18.35■□□□□ 0.53
NPHP3-210ENST00000512094 LHX8Q68G74 356 aa18.33■□□□□ 0.52
NPHP3-210ENST00000512094 POTEIP0CG38 1075 aa18.32■□□□□ 0.52
NPHP3-210ENST00000512094 ZNF579Q8NAF0 562 aaKnown RBP18.32■□□□□ 0.52
NPHP3-210ENST00000512094 DCBLD2Q96PD2 775 aa18.22■□□□□ 0.51
NPHP3-210ENST00000512094 PAK3O75914 559 aaPredicted RBP18.18■□□□□ 0.5
NPHP3-210ENST00000512094 NPM1P06748 294 aaKnown RBP eCLIP18.16■□□□□ 0.5
NPHP3-210ENST00000512094 MNX1P50219 401 aaPredicted RBP18.14■□□□□ 0.49
NPHP3-210ENST00000512094 GALR2O43603 387 aaPredicted RBP18.12■□□□□ 0.49
NPHP3-210ENST00000512094 PROM2Q8N271 834 aa18.1■□□□□ 0.49
NPHP3-210ENST00000512094 PHF12Q96QT6 1004 aa18.09■□□□□ 0.49
NPHP3-210ENST00000512094 MS4A3Q96HJ5 214 aa17.84■□□□□ 0.45
NPHP3-210ENST00000512094 TSPYL2Q9H2G4 693 aaPredicted RBP17.84■□□□□ 0.45
NPHP3-210ENST00000512094 PLEKHG5O94827 1062 aa17.79■□□□□ 0.44
NPHP3-210ENST00000512094 MIER1Q8N108 512 aa17.77■□□□□ 0.44
NPHP3-210ENST00000512094 PELP1Q8IZL8 1130 aaKnown RBP17.76■□□□□ 0.43
NPHP3-210ENST00000512094 CCDC61Q9Y6R9 512 aa17.75■□□□□ 0.43
NPHP3-210ENST00000512094 ASTLQ6HA08 431 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms