RNA–Protein interactions for RNA: ENST00000511873.6

SMN2-211, Transcript of survival of motor neuron 2, centromeric, humanhuman

TSL 5

Gene SMN2, Length 431 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-211ENST00000511873 AEBP2Q6ZN18 517 aaPredicted RBP34.45■■■■□ 3.11
SMN2-211ENST00000511873 CHIC1Q5VXU3 224 aa33.12■■■□□ 2.89
SMN2-211ENST00000511873 SENP3Q9H4L4 574 aaPredicted RBP29.38■■■□□ 2.29
SMN2-211ENST00000511873 PHF23Q9BUL5 403 aaPredicted RBP29.06■■■□□ 2.24
SMN2-211ENST00000511873 FOXD1Q16676 465 aa27.31■■□□□ 1.96
SMN2-211ENST00000511873 PLPPR3Q6T4P5 718 aa26.67■■□□□ 1.86
SMN2-211ENST00000511873 PPP6R1Q9UPN7 881 aa25.84■■□□□ 1.73
SMN2-211ENST00000511873 ADRA2BP18089 450 aa25.8■■□□□ 1.72
SMN2-211ENST00000511873 PIAS4Q8N2W9 510 aaPredicted RBP25.64■■□□□ 1.7
SMN2-211ENST00000511873 MSH5O43196 834 aa25.44■■□□□ 1.66
SMN2-211ENST00000511873 POTEDQ86YR6 584 aa24.14■■□□□ 1.45
SMN2-211ENST00000511873 SCAF1Q9H7N4 1312 aaKnown RBP23.65■■□□□ 1.38
SMN2-211ENST00000511873 MAPK8IP2Q13387 824 aaPredicted RBP23.57■■□□□ 1.36
SMN2-211ENST00000511873 PPP4R3CPQ6ZMV5 832 aa23.42■■□□□ 1.34
SMN2-211ENST00000511873 DMRT2Q9Y5R5 561 aa23.34■■□□□ 1.33
SMN2-211ENST00000511873 CNKSR2Q8WXI2 1034 aa22.9■■□□□ 1.26
SMN2-211ENST00000511873 NCBP3Q53F19 620 aaKnown RBP22.68■■□□□ 1.22
SMN2-211ENST00000511873 HOXD11P31277 338 aaPredicted RBP22.63■■□□□ 1.21
SMN2-211ENST00000511873 RNF216Q9NWF9 866 aaPredicted RBP22.58■■□□□ 1.21
SMN2-211ENST00000511873 DCAF8L1A6NGE4 600 aa22.42■■□□□ 1.18
SMN2-211ENST00000511873 NPM3O75607 178 aaKnown RBP22.3■■□□□ 1.16
SMN2-211ENST00000511873 KCNA4P22459 653 aa22.22■■□□□ 1.15
SMN2-211ENST00000511873 DNAJC5BQ9UF47 199 aa21.78■■□□□ 1.08
SMN2-211ENST00000511873 RNF39Q9H2S5 420 aa21.72■■□□□ 1.07
SMN2-211ENST00000511873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.62■■□□□ 1.05
SMN2-211ENST00000511873 CACNB1Q02641 598 aaPredicted RBP21.61■■□□□ 1.05
SMN2-211ENST00000511873 C1QBPQ07021 282 aaKnown RBP21.46■■□□□ 1.03
SMN2-211ENST00000511873 SLC4A2P04920 1241 aa21.18■□□□□ 0.98
SMN2-211ENST00000511873 U3KPZ7 1027 aaPredicted RBP21.14■□□□□ 0.97
SMN2-211ENST00000511873 SLC4A1APQ9BWU0 796 aaKnown RBP21.07■□□□□ 0.96
SMN2-211ENST00000511873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.74■□□□□ 0.91
SMN2-211ENST00000511873 HNRNPUL2Q1KMD3 747 aaKnown RBP20.74■□□□□ 0.91
SMN2-211ENST00000511873 SPINK5Q9NQ38 1064 aaPredicted RBP20.74■□□□□ 0.91
SMN2-211ENST00000511873 CAPN15O75808 1086 aa20.72■□□□□ 0.91
SMN2-211ENST00000511873 APLP2Q06481 763 aa20.66■□□□□ 0.9
SMN2-211ENST00000511873 MYCNP04198 464 aaPredicted RBP20.63■□□□□ 0.89
SMN2-211ENST00000511873 SAMD1Q6SPF0 538 aaPredicted RBP20.63■□□□□ 0.89
SMN2-211ENST00000511873 FOXD4L1Q9NU39 408 aa20.62■□□□□ 0.89
SMN2-211ENST00000511873 TRHP20396 242 aaPredicted RBP20.49■□□□□ 0.87
SMN2-211ENST00000511873 DSG3P32926 999 aa20.47■□□□□ 0.87
SMN2-211ENST00000511873 ZNF219Q9P2Y4 722 aaPredicted RBP20.45■□□□□ 0.86
SMN2-211ENST00000511873 ZBTB22O15209 634 aa20.41■□□□□ 0.86
SMN2-211ENST00000511873 ABCB7O75027 752 aa20.26■□□□□ 0.83
SMN2-211ENST00000511873 ATF5Q9Y2D1 282 aaPredicted RBP20.1■□□□□ 0.81
SMN2-211ENST00000511873 POLA2Q14181 598 aa20.03■□□□□ 0.8
SMN2-211ENST00000511873 ATXN8OSP0DMR3 200 aa19.96■□□□□ 0.79
SMN2-211ENST00000511873 CSRNP3Q8WYN3 585 aa19.85■□□□□ 0.77
SMN2-211ENST00000511873 EHMT2Q96KQ7 1210 aa19.82■□□□□ 0.76
SMN2-211ENST00000511873 ZBTB12Q9Y330 459 aaPredicted RBP19.65■□□□□ 0.74
SMN2-211ENST00000511873 RBM42Q9BTD8 480 aaKnown RBP19.55■□□□□ 0.72
SMN2-211ENST00000511873 FBLN2P98095 1184 aa19.35■□□□□ 0.69
SMN2-211ENST00000511873 OSCARQ8IYS5 282 aa19.32■□□□□ 0.68
SMN2-211ENST00000511873 MKRN4PQ13434 485 aaPredicted RBP19.19■□□□□ 0.66
SMN2-211ENST00000511873 AKT1S1Q96B36 256 aa19.19■□□□□ 0.66
SMN2-211ENST00000511873 SPDYE2BA6NHP3 402 aa19.06■□□□□ 0.64
SMN2-211ENST00000511873 SPDYE6P0CI01 402 aa19.06■□□□□ 0.64
SMN2-211ENST00000511873 SPDYE2Q495Y8 402 aa19.06■□□□□ 0.64
SMN2-211ENST00000511873 POTEHQ6S545 545 aa19.01■□□□□ 0.63
SMN2-211ENST00000511873 REM2Q8IYK8 340 aaPredicted RBP18.99■□□□□ 0.63
SMN2-211ENST00000511873 CHRDL2Q6WN34 429 aa18.96■□□□□ 0.63
SMN2-211ENST00000511873 ZNF692Q9BU19 519 aaPredicted RBP18.93■□□□□ 0.62
SMN2-211ENST00000511873 SSUH2Q9Y2M2 353 aa18.82■□□□□ 0.6
SMN2-211ENST00000511873 PITPNM1O00562 1244 aa18.77■□□□□ 0.6
SMN2-211ENST00000511873 SPDYE1Q8NFV5 336 aaPredicted RBP18.65■□□□□ 0.58
SMN2-211ENST00000511873 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
SMN2-211ENST00000511873 CLEC11AQ9Y240 323 aa18.62■□□□□ 0.57
SMN2-211ENST00000511873 PIP4P2Q8N4L2 257 aa18.58■□□□□ 0.56
SMN2-211ENST00000511873 SPDYE4A6NLX3 237 aa18.53■□□□□ 0.56
SMN2-211ENST00000511873 FXR2P51116 673 aaKnown RBP eCLIP18.53■□□□□ 0.56
SMN2-211ENST00000511873 PRR29P0C7W0 189 aa18.36■□□□□ 0.53
SMN2-211ENST00000511873 PRKAR2AP13861 404 aaKnown RBP18.32■□□□□ 0.52
SMN2-211ENST00000511873 STAG3Q9UJ98 1225 aa18.24■□□□□ 0.51
SMN2-211ENST00000511873 HAX1O00165 279 aa18.18■□□□□ 0.5
SMN2-211ENST00000511873 CHADLQ6NUI6 762 aa18.18■□□□□ 0.5
SMN2-211ENST00000511873 PROM2Q8N271 834 aa18.09■□□□□ 0.49
SMN2-211ENST00000511873 FKBP8Q14318 412 aa18■□□□□ 0.47
SMN2-211ENST00000511873 SP7Q8TDD2 431 aaPredicted RBP18■□□□□ 0.47
SMN2-211ENST00000511873 FARP1Q9Y4F1 1045 aaPredicted RBP17.96■□□□□ 0.47
SMN2-211ENST00000511873 CREBZFQ9NS37 354 aa17.95■□□□□ 0.46
SMN2-211ENST00000511873 EVX2Q03828 476 aa17.94■□□□□ 0.46
SMN2-211ENST00000511873 C19orf67A6NJJ6 358 aa17.92■□□□□ 0.46
SMN2-211ENST00000511873 CD44P16070 742 aaKnown RBP17.75■□□□□ 0.43
SMN2-211ENST00000511873 NPM1P06748 294 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMN2-211ENST00000511873 MNX1P50219 401 aaPredicted RBP17.69■□□□□ 0.42
SMN2-211ENST00000511873 MIER1Q8N108 512 aa17.68■□□□□ 0.42
SMN2-211ENST00000511873 PLEKHG5O94827 1062 aa17.64■□□□□ 0.41
SMN2-211ENST00000511873 ZRANB1Q9UGI0 708 aa17.58■□□□□ 0.4
SMN2-211ENST00000511873 GABBR2O75899 941 aa17.57■□□□□ 0.4
SMN2-211ENST00000511873 PLCD3Q8N3E9 789 aa17.57■□□□□ 0.4
SMN2-211ENST00000511873 FBXO3Q9UK99 471 aa17.55■□□□□ 0.4
SMN2-211ENST00000511873 PAK3O75914 559 aaPredicted RBP17.54■□□□□ 0.4
SMN2-211ENST00000511873 ZNF579Q8NAF0 562 aaKnown RBP17.48■□□□□ 0.39
SMN2-211ENST00000511873 CLCN6P51797 869 aa17.47■□□□□ 0.39
SMN2-211ENST00000511873 ZBTB47Q9UFB7 747 aaPredicted RBP17.42■□□□□ 0.38
SMN2-211ENST00000511873 TSPYL2Q9H2G4 693 aaPredicted RBP17.37■□□□□ 0.37
SMN2-211ENST00000511873 PHF12Q96QT6 1004 aa17.33■□□□□ 0.36
SMN2-211ENST00000511873 VASPP50552 380 aaPredicted RBP17.28■□□□□ 0.36
SMN2-211ENST00000511873 RASEFQ8IZ41 740 aa17.28■□□□□ 0.36
SMN2-211ENST00000511873 GALR2O43603 387 aaPredicted RBP17.24■□□□□ 0.35
SMN2-211ENST00000511873 CCDC61Q9Y6R9 512 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms