RNA–Protein interactions for RNA: ENST00000511409.1

TRAPPC11-207, Transcript of trafficking protein particle complex 11, humanhuman

TSL 4

Gene TRAPPC11, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-207ENST00000511409 AEBP2Q6ZN18 517 aaPredicted RBP18.98■□□□□ 0.63
TRAPPC11-207ENST00000511409 CHIC1Q5VXU3 224 aa17.86■□□□□ 0.45
TRAPPC11-207ENST00000511409 SENP3Q9H4L4 574 aaPredicted RBP16.29■□□□□ 0.2
TRAPPC11-207ENST00000511409 PHF23Q9BUL5 403 aaPredicted RBP15.97■□□□□ 0.15
TRAPPC11-207ENST00000511409 FOXD1Q16676 465 aa15.15■□□□□ 0.02
TRAPPC11-207ENST00000511409 MSH5O43196 834 aa14.34□□□□□ -0.11
TRAPPC11-207ENST00000511409 POTEDQ86YR6 584 aa14.32□□□□□ -0.12
TRAPPC11-207ENST00000511409 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
TRAPPC11-207ENST00000511409 PIAS4Q8N2W9 510 aaPredicted RBP14.1□□□□□ -0.15
TRAPPC11-207ENST00000511409 PPP6R1Q9UPN7 881 aa13.95□□□□□ -0.18
TRAPPC11-207ENST00000511409 ADRA2BP18089 450 aa13.87□□□□□ -0.19
TRAPPC11-207ENST00000511409 DMRT2Q9Y5R5 561 aa12.88□□□□□ -0.35
TRAPPC11-207ENST00000511409 MAPK8IP2Q13387 824 aaPredicted RBP12.78□□□□□ -0.36
TRAPPC11-207ENST00000511409 SCAF1Q9H7N4 1312 aaKnown RBP12.78□□□□□ -0.36
TRAPPC11-207ENST00000511409 CACNB1Q02641 598 aaPredicted RBP12.35□□□□□ -0.43
TRAPPC11-207ENST00000511409 HOXD11P31277 338 aaPredicted RBP12.34□□□□□ -0.43
TRAPPC11-207ENST00000511409 PPP4R3CPQ6ZMV5 832 aa12.34□□□□□ -0.43
TRAPPC11-207ENST00000511409 DCAF8L1A6NGE4 600 aa12.2□□□□□ -0.46
TRAPPC11-207ENST00000511409 CNKSR2Q8WXI2 1034 aa12.2□□□□□ -0.46
TRAPPC11-207ENST00000511409 RNF39Q9H2S5 420 aa12.2□□□□□ -0.46
TRAPPC11-207ENST00000511409 RNF216Q9NWF9 866 aaPredicted RBP12.18□□□□□ -0.46
TRAPPC11-207ENST00000511409 DNAJC5BQ9UF47 199 aa12.06□□□□□ -0.48
TRAPPC11-207ENST00000511409 C1QBPQ07021 282 aaKnown RBP12.02□□□□□ -0.49
TRAPPC11-207ENST00000511409 NCBP3Q53F19 620 aaKnown RBP11.83□□□□□ -0.52
TRAPPC11-207ENST00000511409 KCNA4P22459 653 aa11.65□□□□□ -0.54
TRAPPC11-207ENST00000511409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.65□□□□□ -0.54
TRAPPC11-207ENST00000511409 NPM3O75607 178 aaKnown RBP11.63□□□□□ -0.55
TRAPPC11-207ENST00000511409 U3KPZ7 1027 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC11-207ENST00000511409 DSG3P32926 999 aa11.32□□□□□ -0.6
TRAPPC11-207ENST00000511409 SPINK5Q9NQ38 1064 aaPredicted RBP11.28□□□□□ -0.6
TRAPPC11-207ENST00000511409 CAPN15O75808 1086 aa11.26□□□□□ -0.61
TRAPPC11-207ENST00000511409 POTEHQ6S545 545 aa11.18□□□□□ -0.62
TRAPPC11-207ENST00000511409 SLC4A2P04920 1241 aa11.17□□□□□ -0.62
TRAPPC11-207ENST00000511409 APLP2Q06481 763 aa11.16□□□□□ -0.62
TRAPPC11-207ENST00000511409 ZNF219Q9P2Y4 722 aaPredicted RBP11.1□□□□□ -0.63
TRAPPC11-207ENST00000511409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.08□□□□□ -0.64
TRAPPC11-207ENST00000511409 HNRNPUL2Q1KMD3 747 aaKnown RBP11.08□□□□□ -0.64
TRAPPC11-207ENST00000511409 SLC4A1APQ9BWU0 796 aaKnown RBP11.08□□□□□ -0.64
TRAPPC11-207ENST00000511409 TRHP20396 242 aaPredicted RBP11□□□□□ -0.65
TRAPPC11-207ENST00000511409 SAMD1Q6SPF0 538 aaPredicted RBP10.99□□□□□ -0.65
TRAPPC11-207ENST00000511409 ABCB7O75027 752 aa10.96□□□□□ -0.65
TRAPPC11-207ENST00000511409 RBM42Q9BTD8 480 aaKnown RBP10.86□□□□□ -0.67
TRAPPC11-207ENST00000511409 EHMT2Q96KQ7 1210 aa10.85□□□□□ -0.67
TRAPPC11-207ENST00000511409 MYCNP04198 464 aaPredicted RBP10.81□□□□□ -0.68
TRAPPC11-207ENST00000511409 FOXD4L1Q9NU39 408 aa10.81□□□□□ -0.68
TRAPPC11-207ENST00000511409 ZBTB22O15209 634 aa10.72□□□□□ -0.69
TRAPPC11-207ENST00000511409 POLA2Q14181 598 aa10.68□□□□□ -0.7
TRAPPC11-207ENST00000511409 CHRDL2Q6WN34 429 aa10.66□□□□□ -0.7
TRAPPC11-207ENST00000511409 CSRNP3Q8WYN3 585 aa10.57□□□□□ -0.72
TRAPPC11-207ENST00000511409 ZBTB12Q9Y330 459 aaPredicted RBP10.57□□□□□ -0.72
TRAPPC11-207ENST00000511409 AKT1S1Q96B36 256 aa10.54□□□□□ -0.72
TRAPPC11-207ENST00000511409 ATXN8OSP0DMR3 200 aa10.53□□□□□ -0.72
TRAPPC11-207ENST00000511409 ATF5Q9Y2D1 282 aaPredicted RBP10.49□□□□□ -0.73
TRAPPC11-207ENST00000511409 REM2Q8IYK8 340 aaPredicted RBP10.39□□□□□ -0.75
TRAPPC11-207ENST00000511409 SP7Q8TDD2 431 aaPredicted RBP10.39□□□□□ -0.75
TRAPPC11-207ENST00000511409 OSCARQ8IYS5 282 aa10.38□□□□□ -0.75
TRAPPC11-207ENST00000511409 PIP4P2Q8N4L2 257 aa10.34□□□□□ -0.75
TRAPPC11-207ENST00000511409 PITPNM1O00562 1244 aa10.29□□□□□ -0.76
TRAPPC11-207ENST00000511409 FXR2P51116 673 aaKnown RBP eCLIP10.29□□□□□ -0.76
TRAPPC11-207ENST00000511409 SPDYE2BA6NHP3 402 aa10.2□□□□□ -0.78
TRAPPC11-207ENST00000511409 SPDYE6P0CI01 402 aa10.2□□□□□ -0.78
TRAPPC11-207ENST00000511409 SPDYE2Q495Y8 402 aa10.2□□□□□ -0.78
TRAPPC11-207ENST00000511409 HAX1O00165 279 aa10.15□□□□□ -0.78
TRAPPC11-207ENST00000511409 FBLN2P98095 1184 aa10.15□□□□□ -0.78
TRAPPC11-207ENST00000511409 SPDYE1Q8NFV5 336 aaPredicted RBP10.06□□□□□ -0.8
TRAPPC11-207ENST00000511409 SSUH2Q9Y2M2 353 aa10.06□□□□□ -0.8
TRAPPC11-207ENST00000511409 MKRN4PQ13434 485 aaPredicted RBP10.03□□□□□ -0.8
TRAPPC11-207ENST00000511409 EVX2Q03828 476 aa10.02□□□□□ -0.81
TRAPPC11-207ENST00000511409 PRKAR2AP13861 404 aaKnown RBP9.99□□□□□ -0.81
TRAPPC11-207ENST00000511409 C19orf67A6NJJ6 358 aa9.96□□□□□ -0.82
TRAPPC11-207ENST00000511409 ZNF692Q9BU19 519 aaPredicted RBP9.95□□□□□ -0.82
TRAPPC11-207ENST00000511409 CLEC11AQ9Y240 323 aa9.94□□□□□ -0.82
TRAPPC11-207ENST00000511409 GABBR2O75899 941 aa9.81□□□□□ -0.84
TRAPPC11-207ENST00000511409 PABPN1Q86U42 306 aaKnown RBP eCLIP9.81□□□□□ -0.84
TRAPPC11-207ENST00000511409 PRR29P0C7W0 189 aa9.79□□□□□ -0.84
TRAPPC11-207ENST00000511409 CHADLQ6NUI6 762 aa9.78□□□□□ -0.84
TRAPPC11-207ENST00000511409 CLCN6P51797 869 aa9.72□□□□□ -0.85
TRAPPC11-207ENST00000511409 LHX8Q68G74 356 aa9.7□□□□□ -0.86
TRAPPC11-207ENST00000511409 CD44P16070 742 aaKnown RBP9.68□□□□□ -0.86
TRAPPC11-207ENST00000511409 FARP1Q9Y4F1 1045 aaPredicted RBP9.68□□□□□ -0.86
TRAPPC11-207ENST00000511409 SPDYE4A6NLX3 237 aa9.67□□□□□ -0.86
TRAPPC11-207ENST00000511409 POTEIP0CG38 1075 aa9.61□□□□□ -0.87
TRAPPC11-207ENST00000511409 PROM2Q8N271 834 aa9.6□□□□□ -0.87
TRAPPC11-207ENST00000511409 ZNF579Q8NAF0 562 aaKnown RBP9.59□□□□□ -0.87
TRAPPC11-207ENST00000511409 FKBP8Q14318 412 aa9.57□□□□□ -0.88
TRAPPC11-207ENST00000511409 STAG3Q9UJ98 1225 aa9.56□□□□□ -0.88
TRAPPC11-207ENST00000511409 CREBZFQ9NS37 354 aa9.53□□□□□ -0.88
TRAPPC11-207ENST00000511409 DCBLD2Q96PD2 775 aa9.49□□□□□ -0.89
TRAPPC11-207ENST00000511409 ZRANB1Q9UGI0 708 aa9.48□□□□□ -0.89
TRAPPC11-207ENST00000511409 GALR2O43603 387 aaPredicted RBP9.41□□□□□ -0.9
TRAPPC11-207ENST00000511409 PAK3O75914 559 aaPredicted RBP9.39□□□□□ -0.91
TRAPPC11-207ENST00000511409 MNX1P50219 401 aaPredicted RBP9.37□□□□□ -0.91
TRAPPC11-207ENST00000511409 NPM1P06748 294 aaKnown RBP eCLIP9.35□□□□□ -0.91
TRAPPC11-207ENST00000511409 PHF12Q96QT6 1004 aa9.33□□□□□ -0.92
TRAPPC11-207ENST00000511409 OTUD5Q96G74 571 aa9.31□□□□□ -0.92
TRAPPC11-207ENST00000511409 FBXO3Q9UK99 471 aa9.29□□□□□ -0.92
TRAPPC11-207ENST00000511409 POTEB2H3BUK9 544 aa9.27□□□□□ -0.93
TRAPPC11-207ENST00000511409 ASTLQ6HA08 431 aaPredicted RBP9.26□□□□□ -0.93
TRAPPC11-207ENST00000511409 PELP1Q8IZL8 1130 aaKnown RBP9.23□□□□□ -0.93
TRAPPC11-207ENST00000511409 MS4A3Q96HJ5 214 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms