RNA–Protein interactions for RNA: ENST00000511067.2

CHD1-206, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 817 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-206ENST00000511067 AEBP2Q6ZN18 517 aaPredicted RBP26.58■■□□□ 1.85
CHD1-206ENST00000511067 CHIC1Q5VXU3 224 aa25.56■■□□□ 1.68
CHD1-206ENST00000511067 SENP3Q9H4L4 574 aaPredicted RBP22.69■■□□□ 1.22
CHD1-206ENST00000511067 PHF23Q9BUL5 403 aaPredicted RBP22.42■■□□□ 1.18
CHD1-206ENST00000511067 FOXD1Q16676 465 aa21.07■□□□□ 0.96
CHD1-206ENST00000511067 PLPPR3Q6T4P5 718 aa20.6■□□□□ 0.89
CHD1-206ENST00000511067 PPP6R1Q9UPN7 881 aa19.91■□□□□ 0.78
CHD1-206ENST00000511067 ADRA2BP18089 450 aa19.9■□□□□ 0.78
CHD1-206ENST00000511067 PIAS4Q8N2W9 510 aaPredicted RBP19.81■□□□□ 0.76
CHD1-206ENST00000511067 MSH5O43196 834 aa19.66■□□□□ 0.74
CHD1-206ENST00000511067 POTEDQ86YR6 584 aa18.63■□□□□ 0.57
CHD1-206ENST00000511067 SCAF1Q9H7N4 1312 aaKnown RBP18.28■□□□□ 0.52
CHD1-206ENST00000511067 MAPK8IP2Q13387 824 aaPredicted RBP18.18■□□□□ 0.5
CHD1-206ENST00000511067 PPP4R3CPQ6ZMV5 832 aa18.08■□□□□ 0.48
CHD1-206ENST00000511067 KCNA4P22459 653 aa18.03■□□□□ 0.48
CHD1-206ENST00000511067 DMRT2Q9Y5R5 561 aa18.01■□□□□ 0.47
CHD1-206ENST00000511067 CNKSR2Q8WXI2 1034 aa17.68■□□□□ 0.42
CHD1-206ENST00000511067 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
CHD1-206ENST00000511067 HOXD11P31277 338 aaPredicted RBP17.46■□□□□ 0.39
CHD1-206ENST00000511067 RNF216Q9NWF9 866 aaPredicted RBP17.44■□□□□ 0.38
CHD1-206ENST00000511067 DCAF8L1A6NGE4 600 aa17.35■□□□□ 0.37
CHD1-206ENST00000511067 NPM3O75607 178 aaKnown RBP17.32■□□□□ 0.36
CHD1-206ENST00000511067 EHMT2Q96KQ7 1210 aa17.31■□□□□ 0.36
CHD1-206ENST00000511067 SLC4A1APQ9BWU0 796 aaKnown RBP17.29■□□□□ 0.36
CHD1-206ENST00000511067 CSRNP3Q8WYN3 585 aa16.92■□□□□ 0.3
CHD1-206ENST00000511067 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
CHD1-206ENST00000511067 RNF39Q9H2S5 420 aa16.77■□□□□ 0.28
CHD1-206ENST00000511067 CACNB1Q02641 598 aaPredicted RBP16.71■□□□□ 0.27
CHD1-206ENST00000511067 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD1-206ENST00000511067 ZBTB22O15209 634 aa16.59■□□□□ 0.25
CHD1-206ENST00000511067 C1QBPQ07021 282 aaKnown RBP16.56■□□□□ 0.24
CHD1-206ENST00000511067 FOXD4L1Q9NU39 408 aa16.52■□□□□ 0.24
CHD1-206ENST00000511067 SLC4A2P04920 1241 aa16.33■□□□□ 0.2
CHD1-206ENST00000511067 U3KPZ7 1027 aaPredicted RBP16.33■□□□□ 0.2
CHD1-206ENST00000511067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
CHD1-206ENST00000511067 MYCNP04198 464 aaPredicted RBP16.04■□□□□ 0.16
CHD1-206ENST00000511067 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
CHD1-206ENST00000511067 CAPN15O75808 1086 aa16.03■□□□□ 0.16
CHD1-206ENST00000511067 SPINK5Q9NQ38 1064 aaPredicted RBP16.01■□□□□ 0.15
CHD1-206ENST00000511067 APLP2Q06481 763 aa16■□□□□ 0.15
CHD1-206ENST00000511067 ATXN8OSP0DMR3 200 aa15.95■□□□□ 0.14
CHD1-206ENST00000511067 SAMD1Q6SPF0 538 aaPredicted RBP15.94■□□□□ 0.14
CHD1-206ENST00000511067 TRHP20396 242 aaPredicted RBP15.84■□□□□ 0.13
CHD1-206ENST00000511067 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
CHD1-206ENST00000511067 DSG3P32926 999 aa15.8■□□□□ 0.12
CHD1-206ENST00000511067 ABCB7O75027 752 aa15.66■□□□□ 0.1
CHD1-206ENST00000511067 ATF5Q9Y2D1 282 aaPredicted RBP15.5■□□□□ 0.07
CHD1-206ENST00000511067 POLA2Q14181 598 aa15.46■□□□□ 0.07
CHD1-206ENST00000511067 FKBP8Q14318 412 aa15.26■□□□□ 0.03
CHD1-206ENST00000511067 ZBTB12Q9Y330 459 aaPredicted RBP15.2■□□□□ 0.02
CHD1-206ENST00000511067 RBM42Q9BTD8 480 aaKnown RBP15.13■□□□□ 0.01
CHD1-206ENST00000511067 FBLN2P98095 1184 aa14.96□□□□□ -0.01
CHD1-206ENST00000511067 OSCARQ8IYS5 282 aa14.94□□□□□ -0.02
CHD1-206ENST00000511067 MKRN4PQ13434 485 aaPredicted RBP14.87□□□□□ -0.03
CHD1-206ENST00000511067 AMER1Q5JTC6 1135 aaPredicted RBP14.86□□□□□ -0.03
CHD1-206ENST00000511067 AKT1S1Q96B36 256 aa14.82□□□□□ -0.04
CHD1-206ENST00000511067 SPDYE4A6NLX3 237 aa14.8□□□□□ -0.04
CHD1-206ENST00000511067 RTN4Q9NQC3 1192 aaKnown RBP14.75□□□□□ -0.05
CHD1-206ENST00000511067 SPDYE2BA6NHP3 402 aa14.73□□□□□ -0.05
CHD1-206ENST00000511067 SPDYE6P0CI01 402 aa14.73□□□□□ -0.05
CHD1-206ENST00000511067 SPDYE2Q495Y8 402 aa14.73□□□□□ -0.05
CHD1-206ENST00000511067 POTEHQ6S545 545 aa14.69□□□□□ -0.06
CHD1-206ENST00000511067 PROM2Q8N271 834 aa14.69□□□□□ -0.06
CHD1-206ENST00000511067 FBXO3Q9UK99 471 aa14.67□□□□□ -0.06
CHD1-206ENST00000511067 REM2Q8IYK8 340 aaPredicted RBP14.66□□□□□ -0.06
CHD1-206ENST00000511067 CHRDL2Q6WN34 429 aa14.65□□□□□ -0.06
CHD1-206ENST00000511067 ZNF692Q9BU19 519 aaPredicted RBP14.62□□□□□ -0.07
CHD1-206ENST00000511067 SSUH2Q9Y2M2 353 aa14.53□□□□□ -0.08
CHD1-206ENST00000511067 PITPNM1O00562 1244 aa14.5□□□□□ -0.09
CHD1-206ENST00000511067 VASPP50552 380 aaPredicted RBP14.41□□□□□ -0.1
CHD1-206ENST00000511067 SPDYE1Q8NFV5 336 aaPredicted RBP14.41□□□□□ -0.1
CHD1-206ENST00000511067 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
CHD1-206ENST00000511067 CLEC11AQ9Y240 323 aa14.4□□□□□ -0.1
CHD1-206ENST00000511067 PIP4P2Q8N4L2 257 aa14.35□□□□□ -0.11
CHD1-206ENST00000511067 FXR2P51116 673 aaKnown RBP eCLIP14.3□□□□□ -0.128e-7■■■■■ 29.8
CHD1-206ENST00000511067 IFNLR1Q8IU57 520 aaPredicted RBP14.22□□□□□ -0.13
CHD1-206ENST00000511067 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
CHD1-206ENST00000511067 SLC24A1O60721 1099 aa14.19□□□□□ -0.14
CHD1-206ENST00000511067 PRR29P0C7W0 189 aa14.19□□□□□ -0.14
CHD1-206ENST00000511067 PRKAR2AP13861 404 aaKnown RBP14.16□□□□□ -0.14
CHD1-206ENST00000511067 HAX1O00165 279 aa14.06□□□□□ -0.16
CHD1-206ENST00000511067 CHADLQ6NUI6 762 aa14.06□□□□□ -0.16
CHD1-206ENST00000511067 KLHL34Q8N239 644 aa14□□□□□ -0.17
CHD1-206ENST00000511067 PLCD3Q8N3E9 789 aa14□□□□□ -0.17
CHD1-206ENST00000511067 SPOCK2Q92563 424 aa14□□□□□ -0.17
CHD1-206ENST00000511067 PKD2Q13563 968 aa13.95□□□□□ -0.18
CHD1-206ENST00000511067 MIER1Q8N108 512 aa13.95□□□□□ -0.18
CHD1-206ENST00000511067 PLEKHG5O94827 1062 aa13.92□□□□□ -0.18
CHD1-206ENST00000511067 SP7Q8TDD2 431 aaPredicted RBP13.91□□□□□ -0.18
CHD1-206ENST00000511067 ZBTB47Q9UFB7 747 aaPredicted RBP13.91□□□□□ -0.18
CHD1-206ENST00000511067 FARP1Q9Y4F1 1045 aaPredicted RBP13.87□□□□□ -0.19
CHD1-206ENST00000511067 CREBZFQ9NS37 354 aa13.85□□□□□ -0.19
CHD1-206ENST00000511067 C19orf67A6NJJ6 358 aa13.84□□□□□ -0.19
CHD1-206ENST00000511067 EVX2Q03828 476 aa13.82□□□□□ -0.2
CHD1-206ENST00000511067 DCAF8L2P0C7V8 631 aa13.78□□□□□ -0.2
CHD1-206ENST00000511067 ECM2O94769 699 aaPredicted RBP13.76□□□□□ -0.21
CHD1-206ENST00000511067 CD44P16070 742 aaKnown RBP13.73□□□□□ -0.21
CHD1-206ENST00000511067 PLCB2Q00722 1185 aa13.7□□□□□ -0.22
CHD1-206ENST00000511067 NPM1P06748 294 aaKnown RBP eCLIP13.68□□□□□ -0.22
CHD1-206ENST00000511067 TRIM41Q8WV44 630 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms