RNA–Protein interactions for RNA: ENST00000511009.1

MBD4-209, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

TSL 2

Gene MBD4, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-209ENST00000511009 AEBP2Q6ZN18 517 aaPredicted RBP22.44■■□□□ 1.18
MBD4-209ENST00000511009 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
MBD4-209ENST00000511009 PHF23Q9BUL5 403 aaPredicted RBP18.99■□□□□ 0.63
MBD4-209ENST00000511009 SENP3Q9H4L4 574 aaPredicted RBP18.95■□□□□ 0.62
MBD4-209ENST00000511009 FOXD1Q16676 465 aa17.7■□□□□ 0.42
MBD4-209ENST00000511009 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
MBD4-209ENST00000511009 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
MBD4-209ENST00000511009 ADRA2BP18089 450 aa16.73■□□□□ 0.27
MBD4-209ENST00000511009 PIAS4Q8N2W9 510 aaPredicted RBP16.52■□□□□ 0.24
MBD4-209ENST00000511009 MSH5O43196 834 aa16.35■□□□□ 0.21
MBD4-209ENST00000511009 POTEDQ86YR6 584 aa15.51■□□□□ 0.07
MBD4-209ENST00000511009 MAPK8IP2Q13387 824 aaPredicted RBP15.3■□□□□ 0.04
MBD4-209ENST00000511009 PPP4R3CPQ6ZMV5 832 aa15.21■□□□□ 0.03
MBD4-209ENST00000511009 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
MBD4-209ENST00000511009 DMRT2Q9Y5R5 561 aa15.14■□□□□ 0.01
MBD4-209ENST00000511009 CNKSR2Q8WXI2 1034 aa14.83□□□□□ -0.04
MBD4-209ENST00000511009 HOXD11P31277 338 aaPredicted RBP14.73□□□□□ -0.05
MBD4-209ENST00000511009 RNF216Q9NWF9 866 aaPredicted RBP14.65□□□□□ -0.06
MBD4-209ENST00000511009 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
MBD4-209ENST00000511009 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
MBD4-209ENST00000511009 KCNA4P22459 653 aa14.54□□□□□ -0.08
MBD4-209ENST00000511009 DCAF8L1A6NGE4 600 aa14.29□□□□□ -0.12
MBD4-209ENST00000511009 DNAJC5BQ9UF47 199 aa14.29□□□□□ -0.12
MBD4-209ENST00000511009 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
MBD4-209ENST00000511009 SLC4A2P04920 1241 aa13.87□□□□□ -0.19
MBD4-209ENST00000511009 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.87□□□□□ -0.193e-6■■□□□ 11.7
MBD4-209ENST00000511009 C1QBPQ07021 282 aaKnown RBP13.82□□□□□ -0.2
MBD4-209ENST00000511009 CACNB1Q02641 598 aaPredicted RBP13.78□□□□□ -0.2
MBD4-209ENST00000511009 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
MBD4-209ENST00000511009 SLC4A1APQ9BWU0 796 aaKnown RBP13.7□□□□□ -0.22
MBD4-209ENST00000511009 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
MBD4-209ENST00000511009 ZBTB22O15209 634 aa13.46□□□□□ -0.25
MBD4-209ENST00000511009 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
MBD4-209ENST00000511009 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
MBD4-209ENST00000511009 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
MBD4-209ENST00000511009 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.32□□□□□ -0.28
MBD4-209ENST00000511009 HNRNPUL2Q1KMD3 747 aaKnown RBP13.32□□□□□ -0.28
MBD4-209ENST00000511009 SAMD1Q6SPF0 538 aaPredicted RBP13.3□□□□□ -0.28
MBD4-209ENST00000511009 CAPN15O75808 1086 aa13.27□□□□□ -0.29
MBD4-209ENST00000511009 DSG3P32926 999 aa13.27□□□□□ -0.29
MBD4-209ENST00000511009 APLP2Q06481 763 aa13.21□□□□□ -0.29
MBD4-209ENST00000511009 ZNF219Q9P2Y4 722 aaPredicted RBP13.16□□□□□ -0.3
MBD4-209ENST00000511009 TRHP20396 242 aaPredicted RBP13.15□□□□□ -0.3
MBD4-209ENST00000511009 ATF5Q9Y2D1 282 aaPredicted RBP13.15□□□□□ -0.3
MBD4-209ENST00000511009 CSRNP3Q8WYN3 585 aa13.1□□□□□ -0.31
MBD4-209ENST00000511009 ABCB7O75027 752 aa13.04□□□□□ -0.32
MBD4-209ENST00000511009 ATXN8OSP0DMR3 200 aa13□□□□□ -0.33
MBD4-209ENST00000511009 POLA2Q14181 598 aa12.92□□□□□ -0.34
MBD4-209ENST00000511009 ZBTB12Q9Y330 459 aaPredicted RBP12.63□□□□□ -0.39
MBD4-209ENST00000511009 MKRN4PQ13434 485 aaPredicted RBP12.58□□□□□ -0.4
MBD4-209ENST00000511009 RBM42Q9BTD8 480 aaKnown RBP12.53□□□□□ -0.4
MBD4-209ENST00000511009 OSCARQ8IYS5 282 aa12.52□□□□□ -0.41
MBD4-209ENST00000511009 FBLN2P98095 1184 aa12.43□□□□□ -0.42
MBD4-209ENST00000511009 AKT1S1Q96B36 256 aa12.37□□□□□ -0.43
MBD4-209ENST00000511009 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
MBD4-209ENST00000511009 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
MBD4-209ENST00000511009 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
MBD4-209ENST00000511009 REM2Q8IYK8 340 aaPredicted RBP12.28□□□□□ -0.44
MBD4-209ENST00000511009 SSUH2Q9Y2M2 353 aa12.28□□□□□ -0.44
MBD4-209ENST00000511009 CHRDL2Q6WN34 429 aa12.19□□□□□ -0.46
MBD4-209ENST00000511009 POTEHQ6S545 545 aa12.17□□□□□ -0.46
MBD4-209ENST00000511009 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
MBD4-209ENST00000511009 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
MBD4-209ENST00000511009 PABPN1Q86U42 306 aaKnown RBP eCLIP12.04□□□□□ -0.48
MBD4-209ENST00000511009 FXR2P51116 673 aaKnown RBP eCLIP12.02□□□□□ -0.49
MBD4-209ENST00000511009 SPDYE4A6NLX3 237 aa12.01□□□□□ -0.49
MBD4-209ENST00000511009 PIP4P2Q8N4L2 257 aa12.01□□□□□ -0.49
MBD4-209ENST00000511009 SPDYE1Q8NFV5 336 aaPredicted RBP12□□□□□ -0.49
MBD4-209ENST00000511009 PROM2Q8N271 834 aa11.94□□□□□ -0.5
MBD4-209ENST00000511009 CLEC11AQ9Y240 323 aa11.9□□□□□ -0.5
MBD4-209ENST00000511009 FKBP8Q14318 412 aa11.87□□□□□ -0.51
MBD4-209ENST00000511009 AMER1Q5JTC6 1135 aaPredicted RBP11.81□□□□□ -0.52
MBD4-209ENST00000511009 PRKAR2AP13861 404 aaKnown RBP11.78□□□□□ -0.52
MBD4-209ENST00000511009 PRR29P0C7W0 189 aa11.77□□□□□ -0.53
MBD4-209ENST00000511009 RTN4Q9NQC3 1192 aaKnown RBP11.75□□□□□ -0.53
MBD4-209ENST00000511009 CHADLQ6NUI6 762 aa11.73□□□□□ -0.53
MBD4-209ENST00000511009 STAG3Q9UJ98 1225 aa11.72□□□□□ -0.53
MBD4-209ENST00000511009 CREBZFQ9NS37 354 aa11.69□□□□□ -0.54
MBD4-209ENST00000511009 EVX2Q03828 476 aa11.65□□□□□ -0.54
MBD4-209ENST00000511009 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
MBD4-209ENST00000511009 MNX1P50219 401 aaPredicted RBP11.6□□□□□ -0.55
MBD4-209ENST00000511009 FARP1Q9Y4F1 1045 aaPredicted RBP11.6□□□□□ -0.55
MBD4-209ENST00000511009 HAX1O00165 279 aa11.59□□□□□ -0.55
MBD4-209ENST00000511009 SLC24A1O60721 1099 aa11.57□□□□□ -0.56
MBD4-209ENST00000511009 SP7Q8TDD2 431 aaPredicted RBP11.55□□□□□ -0.56
MBD4-209ENST00000511009 CD44P16070 742 aaKnown RBP11.41□□□□□ -0.58
MBD4-209ENST00000511009 MIER1Q8N108 512 aa11.36□□□□□ -0.59
MBD4-209ENST00000511009 FBXO3Q9UK99 471 aa11.34□□□□□ -0.59
MBD4-209ENST00000511009 GABBR2O75899 941 aa11.33□□□□□ -0.6
MBD4-209ENST00000511009 NPM1P06748 294 aaKnown RBP eCLIP11.33□□□□□ -0.6
MBD4-209ENST00000511009 ZNF579Q8NAF0 562 aaKnown RBP11.32□□□□□ -0.6
MBD4-209ENST00000511009 VASPP50552 380 aaPredicted RBP11.28□□□□□ -0.6
MBD4-209ENST00000511009 PLCD3Q8N3E9 789 aa11.28□□□□□ -0.6
MBD4-209ENST00000511009 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
MBD4-209ENST00000511009 NUBP1P53384 320 aa11.25□□□□□ -0.61
MBD4-209ENST00000511009 RASEFQ8IZ41 740 aa11.25□□□□□ -0.61
MBD4-209ENST00000511009 PLEKHG5O94827 1062 aa11.22□□□□□ -0.61
MBD4-209ENST00000511009 CCDC61Q9Y6R9 512 aa11.22□□□□□ -0.61
MBD4-209ENST00000511009 PHF12Q96QT6 1004 aa11.21□□□□□ -0.61
MBD4-209ENST00000511009 CLCN6P51797 869 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms