RNA–Protein interactions for RNA: ENST00000508756.2

CHD1-205, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 724 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-205ENST00000508756 AEBP2Q6ZN18 517 aaPredicted RBP38.41■■■■□ 3.74
CHD1-205ENST00000508756 CHIC1Q5VXU3 224 aa37.53■■■■□ 3.6
CHD1-205ENST00000508756 PHF23Q9BUL5 403 aaPredicted RBP33.07■■■□□ 2.88
CHD1-205ENST00000508756 SENP3Q9H4L4 574 aaPredicted RBP32.5■■■□□ 2.79
CHD1-205ENST00000508756 PLPPR3Q6T4P5 718 aa30.48■■■□□ 2.47
CHD1-205ENST00000508756 FOXD1Q16676 465 aa30.21■■■□□ 2.43
CHD1-205ENST00000508756 PPP6R1Q9UPN7 881 aa29.16■■■□□ 2.26
CHD1-205ENST00000508756 ADRA2BP18089 450 aa29.14■■■□□ 2.26
CHD1-205ENST00000508756 PIAS4Q8N2W9 510 aaPredicted RBP28.51■■■□□ 2.15
CHD1-205ENST00000508756 MSH5O43196 834 aa27.76■■■□□ 2.03
CHD1-205ENST00000508756 PPP4R3CPQ6ZMV5 832 aa26.9■■□□□ 1.9
CHD1-205ENST00000508756 SCAF1Q9H7N4 1312 aaKnown RBP26.54■■□□□ 1.84
CHD1-205ENST00000508756 MAPK8IP2Q13387 824 aaPredicted RBP26.43■■□□□ 1.82
CHD1-205ENST00000508756 KCNA4P22459 653 aa26.41■■□□□ 1.82
CHD1-205ENST00000508756 NCBP3Q53F19 620 aaKnown RBP26.17■■□□□ 1.78
CHD1-205ENST00000508756 CNKSR2Q8WXI2 1034 aa26.1■■□□□ 1.77
CHD1-205ENST00000508756 POTEDQ86YR6 584 aa25.97■■□□□ 1.75
CHD1-205ENST00000508756 DMRT2Q9Y5R5 561 aa25.97■■□□□ 1.75
CHD1-205ENST00000508756 NPM3O75607 178 aaKnown RBP25.86■■□□□ 1.73
CHD1-205ENST00000508756 RNF216Q9NWF9 866 aaPredicted RBP25.57■■□□□ 1.68
CHD1-205ENST00000508756 HOXD11P31277 338 aaPredicted RBP25.45■■□□□ 1.66
CHD1-205ENST00000508756 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
CHD1-205ENST00000508756 DNAJC5BQ9UF47 199 aa24.99■■□□□ 1.59
CHD1-205ENST00000508756 DCAF8L1A6NGE4 600 aa24.9■■□□□ 1.58
CHD1-205ENST00000508756 EHMT2Q96KQ7 1210 aa24.57■■□□□ 1.52
CHD1-205ENST00000508756 SLC4A2P04920 1241 aa24.41■■□□□ 1.5
CHD1-205ENST00000508756 ZBTB22O15209 634 aa24.34■■□□□ 1.49
CHD1-205ENST00000508756 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.28■■□□□ 1.48
CHD1-205ENST00000508756 FOXD4L1Q9NU39 408 aa24.24■■□□□ 1.47
CHD1-205ENST00000508756 CSRNP3Q8WYN3 585 aa24.22■■□□□ 1.47
CHD1-205ENST00000508756 U3KPZ7 1027 aaPredicted RBP23.93■■□□□ 1.42
CHD1-205ENST00000508756 MYCNP04198 464 aaPredicted RBP23.85■■□□□ 1.41
CHD1-205ENST00000508756 RNF39Q9H2S5 420 aa23.83■■□□□ 1.41
CHD1-205ENST00000508756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.55■■□□□ 1.36
CHD1-205ENST00000508756 HNRNPUL2Q1KMD3 747 aaKnown RBP23.55■■□□□ 1.36
CHD1-205ENST00000508756 C1QBPQ07021 282 aaKnown RBP23.51■■□□□ 1.35
CHD1-205ENST00000508756 SAMD1Q6SPF0 538 aaPredicted RBP23.5■■□□□ 1.35
CHD1-205ENST00000508756 ATXN8OSP0DMR3 200 aa23.33■■□□□ 1.33
CHD1-205ENST00000508756 ATF5Q9Y2D1 282 aaPredicted RBP23.29■■□□□ 1.32
CHD1-205ENST00000508756 APLP2Q06481 763 aa23.27■■□□□ 1.32
CHD1-205ENST00000508756 SPINK5Q9NQ38 1064 aaPredicted RBP23.26■■□□□ 1.31
CHD1-205ENST00000508756 CACNB1Q02641 598 aaPredicted RBP23.16■■□□□ 1.3
CHD1-205ENST00000508756 CAPN15O75808 1086 aa23.13■■□□□ 1.29
CHD1-205ENST00000508756 TRHP20396 242 aaPredicted RBP23.05■■□□□ 1.28
CHD1-205ENST00000508756 ZNF219Q9P2Y4 722 aaPredicted RBP22.99■■□□□ 1.27
CHD1-205ENST00000508756 ABCB7O75027 752 aa22.74■■□□□ 1.23
CHD1-205ENST00000508756 DSG3P32926 999 aa22.71■■□□□ 1.23
CHD1-205ENST00000508756 POLA2Q14181 598 aa22.67■■□□□ 1.22
CHD1-205ENST00000508756 MKRN4PQ13434 485 aaPredicted RBP22.27■■□□□ 1.16
CHD1-205ENST00000508756 ZBTB12Q9Y330 459 aaPredicted RBP22.24■■□□□ 1.15
CHD1-205ENST00000508756 FBLN2P98095 1184 aa22.22■■□□□ 1.15
CHD1-205ENST00000508756 OSCARQ8IYS5 282 aa21.94■■□□□ 1.1
CHD1-205ENST00000508756 FKBP8Q14318 412 aa21.9■■□□□ 1.1
CHD1-205ENST00000508756 SPDYE4A6NLX3 237 aa21.77■■□□□ 1.08
CHD1-205ENST00000508756 SPDYE2BA6NHP3 402 aa21.67■■□□□ 1.06
CHD1-205ENST00000508756 SPDYE6P0CI01 402 aa21.67■■□□□ 1.06
CHD1-205ENST00000508756 SPDYE2Q495Y8 402 aa21.67■■□□□ 1.06
CHD1-205ENST00000508756 ZNF692Q9BU19 519 aaPredicted RBP21.63■■□□□ 1.05
CHD1-205ENST00000508756 RBM42Q9BTD8 480 aaKnown RBP21.58■■□□□ 1.05
CHD1-205ENST00000508756 SSUH2Q9Y2M2 353 aa21.54■■□□□ 1.04
CHD1-205ENST00000508756 PROM2Q8N271 834 aa21.4■■□□□ 1.02
CHD1-205ENST00000508756 PABPN1Q86U42 306 aaKnown RBP eCLIP21.37■■□□□ 1.01
CHD1-205ENST00000508756 AKT1S1Q96B36 256 aa21.36■■□□□ 1.01
CHD1-205ENST00000508756 REM2Q8IYK8 340 aaPredicted RBP21.19■□□□□ 0.98
CHD1-205ENST00000508756 SPDYE1Q8NFV5 336 aaPredicted RBP21.02■□□□□ 0.96
CHD1-205ENST00000508756 FBXO3Q9UK99 471 aa21.01■□□□□ 0.95
CHD1-205ENST00000508756 PITPNM1O00562 1244 aa20.97■□□□□ 0.95
CHD1-205ENST00000508756 CLEC11AQ9Y240 323 aa20.97■□□□□ 0.95
CHD1-205ENST00000508756 STAG3Q9UJ98 1225 aa20.95■□□□□ 0.94
CHD1-205ENST00000508756 VASPP50552 380 aaPredicted RBP20.79■□□□□ 0.92
CHD1-205ENST00000508756 PRR29P0C7W0 189 aa20.76■□□□□ 0.91
CHD1-205ENST00000508756 CHRDL2Q6WN34 429 aa20.71■□□□□ 0.91
CHD1-205ENST00000508756 MIER1Q8N108 512 aa20.63■□□□□ 0.89
CHD1-205ENST00000508756 PLCD3Q8N3E9 789 aa20.61■□□□□ 0.89
CHD1-205ENST00000508756 CREBZFQ9NS37 354 aa20.55■□□□□ 0.88
CHD1-205ENST00000508756 IFNLR1Q8IU57 520 aaPredicted RBP20.53■□□□□ 0.88
CHD1-205ENST00000508756 FXR2P51116 673 aaKnown RBP eCLIP20.52■□□□□ 0.888e-7■■■■■ 29.8
CHD1-205ENST00000508756 CHADLQ6NUI6 762 aa20.49■□□□□ 0.87
CHD1-205ENST00000508756 PIP4P2Q8N4L2 257 aa20.48■□□□□ 0.87
CHD1-205ENST00000508756 PLEKHG5O94827 1062 aa20.45■□□□□ 0.86
CHD1-205ENST00000508756 PRKAR2AP13861 404 aaKnown RBP20.42■□□□□ 0.86
CHD1-205ENST00000508756 KLHL34Q8N239 644 aa20.41■□□□□ 0.86
CHD1-205ENST00000508756 MNX1P50219 401 aaPredicted RBP20.34■□□□□ 0.85
CHD1-205ENST00000508756 ZBTB47Q9UFB7 747 aaPredicted RBP20.31■□□□□ 0.84
CHD1-205ENST00000508756 POTEHQ6S545 545 aa20.29■□□□□ 0.84
CHD1-205ENST00000508756 FARP1Q9Y4F1 1045 aaPredicted RBP20.25■□□□□ 0.83
CHD1-205ENST00000508756 SPOCK2Q92563 424 aa20.23■□□□□ 0.83
CHD1-205ENST00000508756 NPM1P06748 294 aaKnown RBP eCLIP20.14■□□□□ 0.81
CHD1-205ENST00000508756 NUBP1P53384 320 aa20.1■□□□□ 0.81
CHD1-205ENST00000508756 RTN4Q9NQC3 1192 aaKnown RBP20.06■□□□□ 0.8
CHD1-205ENST00000508756 AMER1Q5JTC6 1135 aaPredicted RBP20.03■□□□□ 0.8
CHD1-205ENST00000508756 RASEFQ8IZ41 740 aa20.03■□□□□ 0.8
CHD1-205ENST00000508756 CIZ1Q9ULV3 898 aaPredicted RBP19.94■□□□□ 0.78
CHD1-205ENST00000508756 FAM212AQ96EL1 285 aa19.92■□□□□ 0.78
CHD1-205ENST00000508756 DCAF8Q5TAQ9 597 aa19.91■□□□□ 0.78
CHD1-205ENST00000508756 TSPYL2Q9H2G4 693 aaPredicted RBP19.89■□□□□ 0.77
CHD1-205ENST00000508756 PKD2Q13563 968 aa19.87■□□□□ 0.77
CHD1-205ENST00000508756 CD44P16070 742 aaKnown RBP19.85■□□□□ 0.77
CHD1-205ENST00000508756 GSE1Q14687 1217 aa19.85■□□□□ 0.77
CHD1-205ENST00000508756 C19orf67A6NJJ6 358 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms