RNA–Protein interactions for RNA: ENST00000506927.1

CLDND1-213, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 520 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-213ENST00000506927 AEBP2Q6ZN18 517 aaPredicted RBP20.4■□□□□ 0.86
CLDND1-213ENST00000506927 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
CLDND1-213ENST00000506927 PHF23Q9BUL5 403 aaPredicted RBP17.42■□□□□ 0.38
CLDND1-213ENST00000506927 SENP3Q9H4L4 574 aaPredicted RBP17.29■□□□□ 0.36
CLDND1-213ENST00000506927 FOXD1Q16676 465 aa16.08■□□□□ 0.16
CLDND1-213ENST00000506927 PLPPR3Q6T4P5 718 aa16.02■□□□□ 0.16
CLDND1-213ENST00000506927 PPP6R1Q9UPN7 881 aa15.41■□□□□ 0.06
CLDND1-213ENST00000506927 ADRA2BP18089 450 aa15.39■□□□□ 0.05
CLDND1-213ENST00000506927 PIAS4Q8N2W9 510 aaPredicted RBP15.13■□□□□ 0.01
CLDND1-213ENST00000506927 MSH5O43196 834 aa14.93□□□□□ -0.02
CLDND1-213ENST00000506927 POTEDQ86YR6 584 aa14.16□□□□□ -0.14
CLDND1-213ENST00000506927 PPP4R3CPQ6ZMV5 832 aa14.11□□□□□ -0.15
CLDND1-213ENST00000506927 SCAF1Q9H7N4 1312 aaKnown RBP14.04□□□□□ -0.16
CLDND1-213ENST00000506927 MAPK8IP2Q13387 824 aaPredicted RBP14.01□□□□□ -0.17
CLDND1-213ENST00000506927 DMRT2Q9Y5R5 561 aa13.79□□□□□ -0.2
CLDND1-213ENST00000506927 CNKSR2Q8WXI2 1034 aa13.73□□□□□ -0.21
CLDND1-213ENST00000506927 NCBP3Q53F19 620 aaKnown RBP13.69□□□□□ -0.22
CLDND1-213ENST00000506927 KCNA4P22459 653 aa13.67□□□□□ -0.22
CLDND1-213ENST00000506927 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
CLDND1-213ENST00000506927 RNF216Q9NWF9 866 aaPredicted RBP13.48□□□□□ -0.25
CLDND1-213ENST00000506927 HOXD11P31277 338 aaPredicted RBP13.46□□□□□ -0.25
CLDND1-213ENST00000506927 DCAF8L1A6NGE4 600 aa13.22□□□□□ -0.29
CLDND1-213ENST00000506927 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
CLDND1-213ENST00000506927 SLC4A1APQ9BWU0 796 aaKnown RBP12.99□□□□□ -0.33
CLDND1-213ENST00000506927 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLDND1-213ENST00000506927 SLC4A2P04920 1241 aa12.79□□□□□ -0.36
CLDND1-213ENST00000506927 RNF39Q9H2S5 420 aa12.73□□□□□ -0.37
CLDND1-213ENST00000506927 CACNB1Q02641 598 aaPredicted RBP12.7□□□□□ -0.38
CLDND1-213ENST00000506927 U3KPZ7 1027 aaPredicted RBP12.62□□□□□ -0.39
CLDND1-213ENST00000506927 FOXD4L1Q9NU39 408 aa12.6□□□□□ -0.39
CLDND1-213ENST00000506927 ZBTB22O15209 634 aa12.59□□□□□ -0.39
CLDND1-213ENST00000506927 C1QBPQ07021 282 aaKnown RBP12.58□□□□□ -0.4
CLDND1-213ENST00000506927 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
CLDND1-213ENST00000506927 MYCNP04198 464 aaPredicted RBP12.46□□□□□ -0.41
CLDND1-213ENST00000506927 CSRNP3Q8WYN3 585 aa12.42□□□□□ -0.42
CLDND1-213ENST00000506927 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.4□□□□□ -0.42
CLDND1-213ENST00000506927 HNRNPUL2Q1KMD3 747 aaKnown RBP12.4□□□□□ -0.42
CLDND1-213ENST00000506927 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
CLDND1-213ENST00000506927 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
CLDND1-213ENST00000506927 APLP2Q06481 763 aa12.27□□□□□ -0.45
CLDND1-213ENST00000506927 CAPN15O75808 1086 aa12.26□□□□□ -0.45
CLDND1-213ENST00000506927 TRHP20396 242 aaPredicted RBP12.18□□□□□ -0.46
CLDND1-213ENST00000506927 ATF5Q9Y2D1 282 aaPredicted RBP12.18□□□□□ -0.46
CLDND1-213ENST00000506927 ATXN8OSP0DMR3 200 aa12.15□□□□□ -0.46
CLDND1-213ENST00000506927 ZNF219Q9P2Y4 722 aaPredicted RBP12.15□□□□□ -0.46
CLDND1-213ENST00000506927 DSG3P32926 999 aa12.08□□□□□ -0.48
CLDND1-213ENST00000506927 ABCB7O75027 752 aa12.03□□□□□ -0.48
CLDND1-213ENST00000506927 POLA2Q14181 598 aa11.96□□□□□ -0.49
CLDND1-213ENST00000506927 ZBTB12Q9Y330 459 aaPredicted RBP11.71□□□□□ -0.53
CLDND1-213ENST00000506927 MKRN4PQ13434 485 aaPredicted RBP11.64□□□□□ -0.55
CLDND1-213ENST00000506927 FBLN2P98095 1184 aa11.63□□□□□ -0.55
CLDND1-213ENST00000506927 OSCARQ8IYS5 282 aa11.55□□□□□ -0.56
CLDND1-213ENST00000506927 NISCHQ9Y2I1 1504 aa11.53□□□□□ -0.56
CLDND1-213ENST00000506927 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
CLDND1-213ENST00000506927 SPDYE2BA6NHP3 402 aa11.4□□□□□ -0.58
CLDND1-213ENST00000506927 SPDYE6P0CI01 402 aa11.4□□□□□ -0.58
CLDND1-213ENST00000506927 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
CLDND1-213ENST00000506927 ZNF692Q9BU19 519 aaPredicted RBP11.37□□□□□ -0.59
CLDND1-213ENST00000506927 AKT1S1Q96B36 256 aa11.34□□□□□ -0.59
CLDND1-213ENST00000506927 SPDYE4A6NLX3 237 aa11.31□□□□□ -0.6
CLDND1-213ENST00000506927 SSUH2Q9Y2M2 353 aa11.31□□□□□ -0.6
CLDND1-213ENST00000506927 REM2Q8IYK8 340 aaPredicted RBP11.24□□□□□ -0.61
CLDND1-213ENST00000506927 FKBP8Q14318 412 aa11.23□□□□□ -0.61
CLDND1-213ENST00000506927 PABPN1Q86U42 306 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLDND1-213ENST00000506927 POTEHQ6S545 545 aa11.17□□□□□ -0.62
CLDND1-213ENST00000506927 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
CLDND1-213ENST00000506927 CHRDL2Q6WN34 429 aa11.11□□□□□ -0.63
CLDND1-213ENST00000506927 SPDYE1Q8NFV5 336 aaPredicted RBP11.1□□□□□ -0.63
CLDND1-213ENST00000506927 PROM2Q8N271 834 aa11.09□□□□□ -0.63
CLDND1-213ENST00000506927 CLEC11AQ9Y240 323 aa11.08□□□□□ -0.64
CLDND1-213ENST00000506927 STAG3Q9UJ98 1225 aa10.98□□□□□ -0.65
CLDND1-213ENST00000506927 PRR29P0C7W0 189 aa10.95□□□□□ -0.66
CLDND1-213ENST00000506927 FXR2P51116 673 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLDND1-213ENST00000506927 PIP4P2Q8N4L2 257 aa10.91□□□□□ -0.66
CLDND1-213ENST00000506927 PRKAR2AP13861 404 aaKnown RBP10.83□□□□□ -0.68
CLDND1-213ENST00000506927 CHADLQ6NUI6 762 aa10.83□□□□□ -0.68
CLDND1-213ENST00000506927 FBXO3Q9UK99 471 aa10.83□□□□□ -0.68
CLDND1-213ENST00000506927 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
CLDND1-213ENST00000506927 MIER1Q8N108 512 aa10.75□□□□□ -0.69
CLDND1-213ENST00000506927 PLCD3Q8N3E9 789 aa10.71□□□□□ -0.69
CLDND1-213ENST00000506927 VASPP50552 380 aaPredicted RBP10.7□□□□□ -0.7
CLDND1-213ENST00000506927 FARP1Q9Y4F1 1045 aaPredicted RBP10.7□□□□□ -0.7
CLDND1-213ENST00000506927 HAX1O00165 279 aa10.69□□□□□ -0.7
CLDND1-213ENST00000506927 MNX1P50219 401 aaPredicted RBP10.67□□□□□ -0.7
CLDND1-213ENST00000506927 PLEKHG5O94827 1062 aa10.66□□□□□ -0.7
CLDND1-213ENST00000506927 NPM1P06748 294 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLDND1-213ENST00000506927 IFNLR1Q8IU57 520 aaPredicted RBP10.57□□□□□ -0.72
CLDND1-213ENST00000506927 SP7Q8TDD2 431 aaPredicted RBP10.57□□□□□ -0.72
CLDND1-213ENST00000506927 ZBTB47Q9UFB7 747 aaPredicted RBP10.57□□□□□ -0.72
CLDND1-213ENST00000506927 KLHL34Q8N239 644 aa10.56□□□□□ -0.72
CLDND1-213ENST00000506927 C19orf67A6NJJ6 358 aa10.55□□□□□ -0.72
CLDND1-213ENST00000506927 EVX2Q03828 476 aa10.52□□□□□ -0.73
CLDND1-213ENST00000506927 CD44P16070 742 aaKnown RBP10.51□□□□□ -0.73
CLDND1-213ENST00000506927 NUBP1P53384 320 aa10.48□□□□□ -0.73
CLDND1-213ENST00000506927 RASEFQ8IZ41 740 aa10.47□□□□□ -0.73
CLDND1-213ENST00000506927 SPOCK2Q92563 424 aa10.44□□□□□ -0.74
CLDND1-213ENST00000506927 TSPYL2Q9H2G4 693 aaPredicted RBP10.44□□□□□ -0.74
CLDND1-213ENST00000506927 ZRANB1Q9UGI0 708 aa10.44□□□□□ -0.74
CLDND1-213ENST00000506927 PAK3O75914 559 aaPredicted RBP10.43□□□□□ -0.74
CLDND1-213ENST00000506927 FAM212AQ96EL1 285 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms