RNA–Protein interactions for RNA: ENST00000506441.1

RETREG1-203, Transcript of reticulophagy regulator 1, humanhuman

TSL 2

Gene RETREG1, Length 585 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG1-203ENST00000506441 AEBP2Q6ZN18 517 aaPredicted RBP34.29■■■■□ 3.08
RETREG1-203ENST00000506441 CHIC1Q5VXU3 224 aa34.11■■■■□ 3.05
RETREG1-203ENST00000506441 PHF23Q9BUL5 403 aaPredicted RBP29.89■■■□□ 2.38
RETREG1-203ENST00000506441 SENP3Q9H4L4 574 aaPredicted RBP29.33■■■□□ 2.29
RETREG1-203ENST00000506441 PLPPR3Q6T4P5 718 aa28.03■■■□□ 2.08
RETREG1-203ENST00000506441 FOXD1Q16676 465 aa26.98■■□□□ 1.91
RETREG1-203ENST00000506441 ADRA2BP18089 450 aa26.3■■□□□ 1.8
RETREG1-203ENST00000506441 PPP6R1Q9UPN7 881 aa26.22■■□□□ 1.79
RETREG1-203ENST00000506441 PIAS4Q8N2W9 510 aaPredicted RBP25.66■■□□□ 1.7
RETREG1-203ENST00000506441 MSH5O43196 834 aa24.93■■□□□ 1.58
RETREG1-203ENST00000506441 PPP4R3CPQ6ZMV5 832 aa24.67■■□□□ 1.54
RETREG1-203ENST00000506441 KCNA4P22459 653 aa24.48■■□□□ 1.51
RETREG1-203ENST00000506441 SCAF1Q9H7N4 1312 aaKnown RBP24.41■■□□□ 1.5
RETREG1-203ENST00000506441 NCBP3Q53F19 620 aaKnown RBP24.36■■□□□ 1.49
RETREG1-203ENST00000506441 CNKSR2Q8WXI2 1034 aa23.96■■□□□ 1.43
RETREG1-203ENST00000506441 NPM3O75607 178 aaKnown RBP23.72■■□□□ 1.39
RETREG1-203ENST00000506441 MAPK8IP2Q13387 824 aaPredicted RBP23.68■■□□□ 1.38
RETREG1-203ENST00000506441 SLC4A1APQ9BWU0 796 aaKnown RBP23.54■■□□□ 1.36
RETREG1-203ENST00000506441 DMRT2Q9Y5R5 561 aa23.39■■□□□ 1.33
RETREG1-203ENST00000506441 RNF216Q9NWF9 866 aaPredicted RBP23.36■■□□□ 1.33
RETREG1-203ENST00000506441 EHMT2Q96KQ7 1210 aa23.28■■□□□ 1.32
RETREG1-203ENST00000506441 HOXD11P31277 338 aaPredicted RBP23.08■■□□□ 1.29
RETREG1-203ENST00000506441 DNAJC5BQ9UF47 199 aa23.05■■□□□ 1.28
RETREG1-203ENST00000506441 CSRNP3Q8WYN3 585 aa22.76■■□□□ 1.23
RETREG1-203ENST00000506441 FOXD4L1Q9NU39 408 aa22.55■■□□□ 1.2
RETREG1-203ENST00000506441 DCAF8L1A6NGE4 600 aa22.47■■□□□ 1.19
RETREG1-203ENST00000506441 ZBTB22O15209 634 aa22.4■■□□□ 1.18
RETREG1-203ENST00000506441 SLC4A2P04920 1241 aa22.22■■□□□ 1.15
RETREG1-203ENST00000506441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.13■■□□□ 1.13
RETREG1-203ENST00000506441 MYCNP04198 464 aaPredicted RBP22.05■■□□□ 1.12
RETREG1-203ENST00000506441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.84■■□□□ 1.09
RETREG1-203ENST00000506441 HNRNPUL2Q1KMD3 747 aaKnown RBP21.84■■□□□ 1.09
RETREG1-203ENST00000506441 ATXN8OSP0DMR3 200 aa21.81■■□□□ 1.08
RETREG1-203ENST00000506441 POTEDQ86YR6 584 aa21.74■■□□□ 1.07
RETREG1-203ENST00000506441 SAMD1Q6SPF0 538 aaPredicted RBP21.7■■□□□ 1.06
RETREG1-203ENST00000506441 U3KPZ7 1027 aaPredicted RBP21.62■■□□□ 1.05
RETREG1-203ENST00000506441 APLP2Q06481 763 aa21.58■■□□□ 1.05
RETREG1-203ENST00000506441 RNF39Q9H2S5 420 aa21.26■□□□□ 0.99
RETREG1-203ENST00000506441 C1QBPQ07021 282 aaKnown RBP21.18■□□□□ 0.98
RETREG1-203ENST00000506441 ATF5Q9Y2D1 282 aaPredicted RBP21.17■□□□□ 0.98
RETREG1-203ENST00000506441 ZNF219Q9P2Y4 722 aaPredicted RBP21.03■□□□□ 0.96
RETREG1-203ENST00000506441 CAPN15O75808 1086 aa20.95■□□□□ 0.94
RETREG1-203ENST00000506441 TRHP20396 242 aaPredicted RBP20.92■□□□□ 0.94
RETREG1-203ENST00000506441 SPINK5Q9NQ38 1064 aaPredicted RBP20.87■□□□□ 0.93
RETREG1-203ENST00000506441 POLA2Q14181 598 aa20.66■□□□□ 0.9
RETREG1-203ENST00000506441 FKBP8Q14318 412 aa20.65■□□□□ 0.9
RETREG1-203ENST00000506441 FBLN2P98095 1184 aa20.62■□□□□ 0.89
RETREG1-203ENST00000506441 ZBTB12Q9Y330 459 aaPredicted RBP20.55■□□□□ 0.88
RETREG1-203ENST00000506441 CACNB1Q02641 598 aaPredicted RBP20.52■□□□□ 0.88
RETREG1-203ENST00000506441 ABCB7O75027 752 aa20.45■□□□□ 0.86
RETREG1-203ENST00000506441 DSG3P32926 999 aa20.38■□□□□ 0.85
RETREG1-203ENST00000506441 MKRN4PQ13434 485 aaPredicted RBP20.3■□□□□ 0.84
RETREG1-203ENST00000506441 SPDYE4A6NLX3 237 aa20.26■□□□□ 0.83
RETREG1-203ENST00000506441 FBXO3Q9UK99 471 aa20.02■□□□□ 0.8
RETREG1-203ENST00000506441 SPDYE2BA6NHP3 402 aa19.93■□□□□ 0.78
RETREG1-203ENST00000506441 SPDYE6P0CI01 402 aa19.93■□□□□ 0.78
RETREG1-203ENST00000506441 SPDYE2Q495Y8 402 aa19.93■□□□□ 0.78
RETREG1-203ENST00000506441 ZNF692Q9BU19 519 aaPredicted RBP19.91■□□□□ 0.78
RETREG1-203ENST00000506441 OSCARQ8IYS5 282 aa19.86■□□□□ 0.77
RETREG1-203ENST00000506441 PROM2Q8N271 834 aa19.86■□□□□ 0.77
RETREG1-203ENST00000506441 AMER1Q5JTC6 1135 aaPredicted RBP19.72■□□□□ 0.75
RETREG1-203ENST00000506441 SSUH2Q9Y2M2 353 aa19.69■□□□□ 0.74
RETREG1-203ENST00000506441 RBM42Q9BTD8 480 aaKnown RBP19.64■□□□□ 0.73
RETREG1-203ENST00000506441 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
RETREG1-203ENST00000506441 STAG3Q9UJ98 1225 aa19.56■□□□□ 0.72
RETREG1-203ENST00000506441 VASPP50552 380 aaPredicted RBP19.53■□□□□ 0.72
RETREG1-203ENST00000506441 RTN4Q9NQC3 1192 aaKnown RBP19.43■□□□□ 0.7
RETREG1-203ENST00000506441 AKT1S1Q96B36 256 aa19.41■□□□□ 0.7
RETREG1-203ENST00000506441 PLEKHG5O94827 1062 aa19.33■□□□□ 0.68
RETREG1-203ENST00000506441 PLCD3Q8N3E9 789 aa19.29■□□□□ 0.68
RETREG1-203ENST00000506441 SPDYE1Q8NFV5 336 aaPredicted RBP19.27■□□□□ 0.68
RETREG1-203ENST00000506441 KLHL34Q8N239 644 aa19.25■□□□□ 0.67
RETREG1-203ENST00000506441 MIER1Q8N108 512 aa19.24■□□□□ 0.67
RETREG1-203ENST00000506441 IFNLR1Q8IU57 520 aaPredicted RBP19.21■□□□□ 0.67
RETREG1-203ENST00000506441 ZBTB47Q9UFB7 747 aaPredicted RBP19.16■□□□□ 0.66
RETREG1-203ENST00000506441 REM2Q8IYK8 340 aaPredicted RBP19.12■□□□□ 0.65
RETREG1-203ENST00000506441 CLEC11AQ9Y240 323 aa19.11■□□□□ 0.65
RETREG1-203ENST00000506441 SPOCK2Q92563 424 aa19.08■□□□□ 0.64
RETREG1-203ENST00000506441 PRR29P0C7W0 189 aa19.05■□□□□ 0.64
RETREG1-203ENST00000506441 PITPNM1O00562 1244 aa18.84■□□□□ 0.61
RETREG1-203ENST00000506441 CREBZFQ9NS37 354 aa18.72■□□□□ 0.59
RETREG1-203ENST00000506441 PKD2Q13563 968 aa18.71■□□□□ 0.59
RETREG1-203ENST00000506441 CIZ1Q9ULV3 898 aaPredicted RBP18.71■□□□□ 0.59
RETREG1-203ENST00000506441 ECM2O94769 699 aaPredicted RBP18.69■□□□□ 0.58
RETREG1-203ENST00000506441 NPM1P06748 294 aaKnown RBP eCLIP18.69■□□□□ 0.58
RETREG1-203ENST00000506441 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
RETREG1-203ENST00000506441 GSE1Q14687 1217 aa18.67■□□□□ 0.58
RETREG1-203ENST00000506441 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
RETREG1-203ENST00000506441 DCAF8Q5TAQ9 597 aa18.58■□□□□ 0.56
RETREG1-203ENST00000506441 FAM212AQ96EL1 285 aa18.57■□□□□ 0.56
RETREG1-203ENST00000506441 NUBP1P53384 320 aa18.54■□□□□ 0.56
RETREG1-203ENST00000506441 MNX1P50219 401 aaPredicted RBP18.51■□□□□ 0.55
RETREG1-203ENST00000506441 CHRDL2Q6WN34 429 aa18.49■□□□□ 0.55
RETREG1-203ENST00000506441 PRKAR2AP13861 404 aaKnown RBP18.46■□□□□ 0.55
RETREG1-203ENST00000506441 CHADLQ6NUI6 762 aa18.45■□□□□ 0.54
RETREG1-203ENST00000506441 FXR2P51116 673 aaKnown RBP eCLIP18.44■□□□□ 0.54
RETREG1-203ENST00000506441 SLC24A1O60721 1099 aa18.42■□□□□ 0.54
RETREG1-203ENST00000506441 FARP1Q9Y4F1 1045 aaPredicted RBP18.42■□□□□ 0.54
RETREG1-203ENST00000506441 TAOK2Q9UL54 1235 aa18.41■□□□□ 0.54
RETREG1-203ENST00000506441 RGL2O15211 777 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms