RNA–Protein interactions for RNA: ENST00000506357.5

SGCB-202, Transcript of sarcoglycan beta, humanhuman

TSL 5

Gene SGCB, Length 663 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCB-202ENST00000506357 AEBP2Q6ZN18 517 aaPredicted RBP23.12■■□□□ 1.29
SGCB-202ENST00000506357 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
SGCB-202ENST00000506357 PHF23Q9BUL5 403 aaPredicted RBP20.15■□□□□ 0.82
SGCB-202ENST00000506357 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
SGCB-202ENST00000506357 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
SGCB-202ENST00000506357 FOXD1Q16676 465 aa18.17■□□□□ 0.5
SGCB-202ENST00000506357 ADRA2BP18089 450 aa17.73■□□□□ 0.43
SGCB-202ENST00000506357 PPP6R1Q9UPN7 881 aa17.68■□□□□ 0.42
SGCB-202ENST00000506357 PIAS4Q8N2W9 510 aaPredicted RBP17.28■□□□□ 0.36
SGCB-202ENST00000506357 MSH5O43196 834 aa16.73■□□□□ 0.27
SGCB-202ENST00000506357 PPP4R3CPQ6ZMV5 832 aa16.6■□□□□ 0.25
SGCB-202ENST00000506357 KCNA4P22459 653 aa16.53■□□□□ 0.24
SGCB-202ENST00000506357 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
SGCB-202ENST00000506357 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
SGCB-202ENST00000506357 CNKSR2Q8WXI2 1034 aa16.09■□□□□ 0.17
SGCB-202ENST00000506357 NPM3O75607 178 aaKnown RBP15.99■□□□□ 0.15
SGCB-202ENST00000506357 MAPK8IP2Q13387 824 aaPredicted RBP15.96■□□□□ 0.15
SGCB-202ENST00000506357 SLC4A1APQ9BWU0 796 aaKnown RBP15.87■□□□□ 0.13
SGCB-202ENST00000506357 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
SGCB-202ENST00000506357 DMRT2Q9Y5R5 561 aa15.73■□□□□ 0.11
SGCB-202ENST00000506357 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
SGCB-202ENST00000506357 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
SGCB-202ENST00000506357 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
SGCB-202ENST00000506357 CSRNP3Q8WYN3 585 aa15.35■□□□□ 0.05
SGCB-202ENST00000506357 FOXD4L1Q9NU39 408 aa15.18■□□□□ 0.02
SGCB-202ENST00000506357 ZBTB22O15209 634 aa15.16■□□□□ 0.02
SGCB-202ENST00000506357 DCAF8L1A6NGE4 600 aa15.13■□□□□ 0.01
SGCB-202ENST00000506357 SLC4A2P04920 1241 aa14.99□□□□□ -0.01
SGCB-202ENST00000506357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.88□□□□□ -0.03
SGCB-202ENST00000506357 MYCNP04198 464 aaPredicted RBP14.83□□□□□ -0.04
SGCB-202ENST00000506357 ATXN8OSP0DMR3 200 aa14.64□□□□□ -0.07
SGCB-202ENST00000506357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
SGCB-202ENST00000506357 HNRNPUL2Q1KMD3 747 aaKnown RBP14.63□□□□□ -0.07
SGCB-202ENST00000506357 POTEDQ86YR6 584 aa14.62□□□□□ -0.07
SGCB-202ENST00000506357 U3KPZ7 1027 aaPredicted RBP14.58□□□□□ -0.08
SGCB-202ENST00000506357 SAMD1Q6SPF0 538 aaPredicted RBP14.56□□□□□ -0.08
SGCB-202ENST00000506357 APLP2Q06481 763 aa14.44□□□□□ -0.1
SGCB-202ENST00000506357 RNF39Q9H2S5 420 aa14.3□□□□□ -0.12
SGCB-202ENST00000506357 ATF5Q9Y2D1 282 aaPredicted RBP14.3□□□□□ -0.12
SGCB-202ENST00000506357 C1QBPQ07021 282 aaKnown RBP14.2□□□□□ -0.14
SGCB-202ENST00000506357 ZNF219Q9P2Y4 722 aaPredicted RBP14.14□□□□□ -0.15
SGCB-202ENST00000506357 CAPN15O75808 1086 aa14.1□□□□□ -0.15
SGCB-202ENST00000506357 TRHP20396 242 aaPredicted RBP14.09□□□□□ -0.15
SGCB-202ENST00000506357 SPINK5Q9NQ38 1064 aaPredicted RBP14.08□□□□□ -0.16
SGCB-202ENST00000506357 FKBP8Q14318 412 aa13.94□□□□□ -0.18
SGCB-202ENST00000506357 POLA2Q14181 598 aa13.89□□□□□ -0.19
SGCB-202ENST00000506357 FBLN2P98095 1184 aa13.85□□□□□ -0.19
SGCB-202ENST00000506357 ABCB7O75027 752 aa13.81□□□□□ -0.2
SGCB-202ENST00000506357 CACNB1Q02641 598 aaPredicted RBP13.78□□□□□ -0.2
SGCB-202ENST00000506357 ZBTB12Q9Y330 459 aaPredicted RBP13.78□□□□□ -0.2
SGCB-202ENST00000506357 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
SGCB-202ENST00000506357 DSG3P32926 999 aa13.7□□□□□ -0.22
SGCB-202ENST00000506357 SPDYE4A6NLX3 237 aa13.64□□□□□ -0.23
SGCB-202ENST00000506357 FBXO3Q9UK99 471 aa13.43□□□□□ -0.26
SGCB-202ENST00000506357 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
SGCB-202ENST00000506357 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
SGCB-202ENST00000506357 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
SGCB-202ENST00000506357 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
SGCB-202ENST00000506357 PROM2Q8N271 834 aa13.38□□□□□ -0.27
SGCB-202ENST00000506357 ZNF692Q9BU19 519 aaPredicted RBP13.38□□□□□ -0.27
SGCB-202ENST00000506357 AMER1Q5JTC6 1135 aaPredicted RBP13.28□□□□□ -0.28
SGCB-202ENST00000506357 SSUH2Q9Y2M2 353 aa13.26□□□□□ -0.29
SGCB-202ENST00000506357 PABPN1Q86U42 306 aaKnown RBP eCLIP13.2□□□□□ -0.3
SGCB-202ENST00000506357 VASPP50552 380 aaPredicted RBP13.18□□□□□ -0.3
SGCB-202ENST00000506357 RTN4Q9NQC3 1192 aaKnown RBP13.17□□□□□ -0.3
SGCB-202ENST00000506357 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
SGCB-202ENST00000506357 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
SGCB-202ENST00000506357 AKT1S1Q96B36 256 aa13.02□□□□□ -0.33
SGCB-202ENST00000506357 PLCD3Q8N3E9 789 aa12.98□□□□□ -0.33
SGCB-202ENST00000506357 IFNLR1Q8IU57 520 aaPredicted RBP12.96□□□□□ -0.33
SGCB-202ENST00000506357 KLHL34Q8N239 644 aa12.95□□□□□ -0.34
SGCB-202ENST00000506357 PLEKHG5O94827 1062 aa12.94□□□□□ -0.34
SGCB-202ENST00000506357 SPDYE1Q8NFV5 336 aaPredicted RBP12.94□□□□□ -0.34
SGCB-202ENST00000506357 MIER1Q8N108 512 aa12.93□□□□□ -0.34
SGCB-202ENST00000506357 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
SGCB-202ENST00000506357 CLEC11AQ9Y240 323 aa12.86□□□□□ -0.35
SGCB-202ENST00000506357 SPOCK2Q92563 424 aa12.84□□□□□ -0.35
SGCB-202ENST00000506357 ZBTB47Q9UFB7 747 aaPredicted RBP12.84□□□□□ -0.35
SGCB-202ENST00000506357 PRR29P0C7W0 189 aa12.78□□□□□ -0.36
SGCB-202ENST00000506357 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
SGCB-202ENST00000506357 PKD2Q13563 968 aa12.63□□□□□ -0.39
SGCB-202ENST00000506357 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
SGCB-202ENST00000506357 CREBZFQ9NS37 354 aa12.61□□□□□ -0.39
SGCB-202ENST00000506357 CIZ1Q9ULV3 898 aaPredicted RBP12.61□□□□□ -0.39
SGCB-202ENST00000506357 ECM2O94769 699 aaPredicted RBP12.59□□□□□ -0.39
SGCB-202ENST00000506357 NPM1P06748 294 aaKnown RBP eCLIP12.53□□□□□ -0.4
SGCB-202ENST00000506357 GSE1Q14687 1217 aa12.53□□□□□ -0.4
SGCB-202ENST00000506357 TRIM41Q8WV44 630 aa12.51□□□□□ -0.41
SGCB-202ENST00000506357 NUBP1P53384 320 aa12.49□□□□□ -0.41
SGCB-202ENST00000506357 FAM212AQ96EL1 285 aa12.49□□□□□ -0.41
SGCB-202ENST00000506357 MNX1P50219 401 aaPredicted RBP12.48□□□□□ -0.41
SGCB-202ENST00000506357 DCAF8Q5TAQ9 597 aa12.48□□□□□ -0.41
SGCB-202ENST00000506357 SLC24A1O60721 1099 aa12.46□□□□□ -0.41
SGCB-202ENST00000506357 CHADLQ6NUI6 762 aa12.45□□□□□ -0.42
SGCB-202ENST00000506357 CHRDL2Q6WN34 429 aa12.44□□□□□ -0.42
SGCB-202ENST00000506357 PRKAR2AP13861 404 aaKnown RBP12.42□□□□□ -0.42
SGCB-202ENST00000506357 RGL2O15211 777 aa12.39□□□□□ -0.43
SGCB-202ENST00000506357 FXR2P51116 673 aaKnown RBP eCLIP12.39□□□□□ -0.43
SGCB-202ENST00000506357 FARP1Q9Y4F1 1045 aaPredicted RBP12.39□□□□□ -0.43
SGCB-202ENST00000506357 RASEFQ8IZ41 740 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms