RNA–Protein interactions for RNA: ENST00000505874.1

LINC00616-202, long intergenic non-protein coding RNA 616, humanhuman

TSL 3

Gene LINC00616, Length 260 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00616-202ENST00000505874 AEBP2Q6ZN18 517 aaPredicted RBP25.66■■□□□ 1.7
LINC00616-202ENST00000505874 CHIC1Q5VXU3 224 aa24.73■■□□□ 1.55
LINC00616-202ENST00000505874 SENP3Q9H4L4 574 aaPredicted RBP21.79■■□□□ 1.08
LINC00616-202ENST00000505874 PHF23Q9BUL5 403 aaPredicted RBP21.74■■□□□ 1.07
LINC00616-202ENST00000505874 FOXD1Q16676 465 aa20.29■□□□□ 0.84
LINC00616-202ENST00000505874 PLPPR3Q6T4P5 718 aa19.95■□□□□ 0.78
LINC00616-202ENST00000505874 PPP6R1Q9UPN7 881 aa19.3■□□□□ 0.68
LINC00616-202ENST00000505874 ADRA2BP18089 450 aa19.28■□□□□ 0.68
LINC00616-202ENST00000505874 PIAS4Q8N2W9 510 aaPredicted RBP19.07■□□□□ 0.64
LINC00616-202ENST00000505874 MSH5O43196 834 aa18.8■□□□□ 0.6
LINC00616-202ENST00000505874 POTEDQ86YR6 584 aa17.68■□□□□ 0.42
LINC00616-202ENST00000505874 SCAF1Q9H7N4 1312 aaKnown RBP17.59■□□□□ 0.41
LINC00616-202ENST00000505874 MAPK8IP2Q13387 824 aaPredicted RBP17.59■□□□□ 0.41
LINC00616-202ENST00000505874 PPP4R3CPQ6ZMV5 832 aa17.56■□□□□ 0.4
LINC00616-202ENST00000505874 DMRT2Q9Y5R5 561 aa17.34■□□□□ 0.37
LINC00616-202ENST00000505874 CNKSR2Q8WXI2 1034 aa17.11■□□□□ 0.33
LINC00616-202ENST00000505874 NCBP3Q53F19 620 aaKnown RBP17■□□□□ 0.31
LINC00616-202ENST00000505874 HOXD11P31277 338 aaPredicted RBP16.85■□□□□ 0.29
LINC00616-202ENST00000505874 RNF216Q9NWF9 866 aaPredicted RBP16.85■□□□□ 0.29
LINC00616-202ENST00000505874 KCNA4P22459 653 aa16.83■□□□□ 0.28
LINC00616-202ENST00000505874 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
LINC00616-202ENST00000505874 DCAF8L1A6NGE4 600 aa16.7■□□□□ 0.26
LINC00616-202ENST00000505874 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
LINC00616-202ENST00000505874 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.12■□□□□ 0.17
LINC00616-202ENST00000505874 RNF39Q9H2S5 420 aa16.09■□□□□ 0.17
LINC00616-202ENST00000505874 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
LINC00616-202ENST00000505874 CACNB1Q02641 598 aaPredicted RBP15.93■□□□□ 0.14
LINC00616-202ENST00000505874 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
LINC00616-202ENST00000505874 C1QBPQ07021 282 aaKnown RBP15.86■□□□□ 0.13
LINC00616-202ENST00000505874 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
LINC00616-202ENST00000505874 FOXD4L1Q9NU39 408 aa15.54■□□□□ 0.08
LINC00616-202ENST00000505874 ZBTB22O15209 634 aa15.48■□□□□ 0.07
LINC00616-202ENST00000505874 MYCNP04198 464 aaPredicted RBP15.48■□□□□ 0.07
LINC00616-202ENST00000505874 SPINK5Q9NQ38 1064 aaPredicted RBP15.48■□□□□ 0.07
LINC00616-202ENST00000505874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
LINC00616-202ENST00000505874 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
LINC00616-202ENST00000505874 CAPN15O75808 1086 aa15.44■□□□□ 0.06
LINC00616-202ENST00000505874 SAMD1Q6SPF0 538 aaPredicted RBP15.41■□□□□ 0.06
LINC00616-202ENST00000505874 APLP2Q06481 763 aa15.37■□□□□ 0.05
LINC00616-202ENST00000505874 TRHP20396 242 aaPredicted RBP15.3■□□□□ 0.04
LINC00616-202ENST00000505874 ZNF219Q9P2Y4 722 aaPredicted RBP15.24■□□□□ 0.03
LINC00616-202ENST00000505874 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
LINC00616-202ENST00000505874 DSG3P32926 999 aa15.21■□□□□ 0.03
LINC00616-202ENST00000505874 ABCB7O75027 752 aa15.14■□□□□ 0.01
LINC00616-202ENST00000505874 ATF5Q9Y2D1 282 aaPredicted RBP15.13■□□□□ 0.01
LINC00616-202ENST00000505874 CSRNP3Q8WYN3 585 aa15.12■□□□□ 0.01
LINC00616-202ENST00000505874 ATXN8OSP0DMR3 200 aa14.99□□□□□ -0.01
LINC00616-202ENST00000505874 POLA2Q14181 598 aa14.95□□□□□ -0.02
LINC00616-202ENST00000505874 ZBTB12Q9Y330 459 aaPredicted RBP14.65□□□□□ -0.06
LINC00616-202ENST00000505874 FBLN2P98095 1184 aa14.5□□□□□ -0.09
LINC00616-202ENST00000505874 OSCARQ8IYS5 282 aa14.48□□□□□ -0.09
LINC00616-202ENST00000505874 RBM42Q9BTD8 480 aaKnown RBP14.48□□□□□ -0.09
LINC00616-202ENST00000505874 MKRN4PQ13434 485 aaPredicted RBP14.44□□□□□ -0.1
LINC00616-202ENST00000505874 AKT1S1Q96B36 256 aa14.25□□□□□ -0.13
LINC00616-202ENST00000505874 SPDYE2BA6NHP3 402 aa14.23□□□□□ -0.13
LINC00616-202ENST00000505874 SPDYE6P0CI01 402 aa14.23□□□□□ -0.13
LINC00616-202ENST00000505874 SPDYE2Q495Y8 402 aa14.23□□□□□ -0.13
LINC00616-202ENST00000505874 ZNF692Q9BU19 519 aaPredicted RBP14.16□□□□□ -0.14
LINC00616-202ENST00000505874 REM2Q8IYK8 340 aaPredicted RBP14.14□□□□□ -0.15
LINC00616-202ENST00000505874 SSUH2Q9Y2M2 353 aa14.09□□□□□ -0.15
LINC00616-202ENST00000505874 CHRDL2Q6WN34 429 aa14.04□□□□□ -0.16
LINC00616-202ENST00000505874 PITPNM1O00562 1244 aa13.99□□□□□ -0.17
LINC00616-202ENST00000505874 SPDYE4A6NLX3 237 aa13.98□□□□□ -0.17
LINC00616-202ENST00000505874 PABPN1Q86U42 306 aaKnown RBP eCLIP13.98□□□□□ -0.17
LINC00616-202ENST00000505874 POTEHQ6S545 545 aa13.94□□□□□ -0.18
LINC00616-202ENST00000505874 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
LINC00616-202ENST00000505874 SPDYE1Q8NFV5 336 aaPredicted RBP13.9□□□□□ -0.18
LINC00616-202ENST00000505874 PIP4P2Q8N4L2 257 aa13.8□□□□□ -0.2
LINC00616-202ENST00000505874 FXR2P51116 673 aaKnown RBP eCLIP13.75□□□□□ -0.21
LINC00616-202ENST00000505874 FKBP8Q14318 412 aa13.72□□□□□ -0.21
LINC00616-202ENST00000505874 PRR29P0C7W0 189 aa13.7□□□□□ -0.22
LINC00616-202ENST00000505874 PRKAR2AP13861 404 aaKnown RBP13.64□□□□□ -0.23
LINC00616-202ENST00000505874 PROM2Q8N271 834 aa13.64□□□□□ -0.23
LINC00616-202ENST00000505874 STAG3Q9UJ98 1225 aa13.63□□□□□ -0.23
LINC00616-202ENST00000505874 CHADLQ6NUI6 762 aa13.59□□□□□ -0.23
LINC00616-202ENST00000505874 HAX1O00165 279 aa13.46□□□□□ -0.25
LINC00616-202ENST00000505874 CREBZFQ9NS37 354 aa13.45□□□□□ -0.26
LINC00616-202ENST00000505874 FARP1Q9Y4F1 1045 aaPredicted RBP13.4□□□□□ -0.26
LINC00616-202ENST00000505874 EVX2Q03828 476 aa13.31□□□□□ -0.28
LINC00616-202ENST00000505874 C19orf67A6NJJ6 358 aa13.3□□□□□ -0.28
LINC00616-202ENST00000505874 MIER1Q8N108 512 aa13.3□□□□□ -0.28
LINC00616-202ENST00000505874 MNX1P50219 401 aaPredicted RBP13.26□□□□□ -0.29
LINC00616-202ENST00000505874 PLCD3Q8N3E9 789 aa13.26□□□□□ -0.29
LINC00616-202ENST00000505874 FBXO3Q9UK99 471 aa13.26□□□□□ -0.29
LINC00616-202ENST00000505874 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
LINC00616-202ENST00000505874 PLEKHG5O94827 1062 aa13.23□□□□□ -0.29
LINC00616-202ENST00000505874 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
LINC00616-202ENST00000505874 NPM1P06748 294 aaKnown RBP eCLIP13.21□□□□□ -0.29
LINC00616-202ENST00000505874 VASPP50552 380 aaPredicted RBP13.13□□□□□ -0.31
LINC00616-202ENST00000505874 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
LINC00616-202ENST00000505874 PAK3O75914 559 aaPredicted RBP13.08□□□□□ -0.32
LINC00616-202ENST00000505874 ZBTB47Q9UFB7 747 aaPredicted RBP13.06□□□□□ -0.32
LINC00616-202ENST00000505874 TSPYL2Q9H2G4 693 aaPredicted RBP13.03□□□□□ -0.32
LINC00616-202ENST00000505874 GABBR2O75899 941 aa13.02□□□□□ -0.33
LINC00616-202ENST00000505874 ZNF579Q8NAF0 562 aaKnown RBP13.01□□□□□ -0.33
LINC00616-202ENST00000505874 RASEFQ8IZ41 740 aa13□□□□□ -0.33
LINC00616-202ENST00000505874 KLHL34Q8N239 644 aa13□□□□□ -0.33
LINC00616-202ENST00000505874 PHF12Q96QT6 1004 aa12.98□□□□□ -0.33
LINC00616-202ENST00000505874 NUBP1P53384 320 aa12.97□□□□□ -0.33
LINC00616-202ENST00000505874 IFNLR1Q8IU57 520 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms