RNA–Protein interactions for RNA: ENST00000505108.1

TRAPPC13-207, Transcript of trafficking protein particle complex 13, humanhuman

TSL 2

Gene TRAPPC13, Length 844 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-207ENST00000505108 AEBP2Q6ZN18 517 aaPredicted RBP29.04■■■□□ 2.24
TRAPPC13-207ENST00000505108 CHIC1Q5VXU3 224 aa28.55■■■□□ 2.16
TRAPPC13-207ENST00000505108 PHF23Q9BUL5 403 aaPredicted RBP25.2■■□□□ 1.62
TRAPPC13-207ENST00000505108 SENP3Q9H4L4 574 aaPredicted RBP24.48■■□□□ 1.51
TRAPPC13-207ENST00000505108 PLPPR3Q6T4P5 718 aa23.25■■□□□ 1.31
TRAPPC13-207ENST00000505108 FOXD1Q16676 465 aa22.77■■□□□ 1.24
TRAPPC13-207ENST00000505108 PPP6R1Q9UPN7 881 aa22.18■■□□□ 1.14
TRAPPC13-207ENST00000505108 ADRA2BP18089 450 aa22.15■■□□□ 1.14
TRAPPC13-207ENST00000505108 PIAS4Q8N2W9 510 aaPredicted RBP21.5■■□□□ 1.03
TRAPPC13-207ENST00000505108 MSH5O43196 834 aa20.78■□□□□ 0.92
TRAPPC13-207ENST00000505108 PPP4R3CPQ6ZMV5 832 aa20.57■□□□□ 0.88
TRAPPC13-207ENST00000505108 KCNA4P22459 653 aa20.44■□□□□ 0.86
TRAPPC13-207ENST00000505108 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
TRAPPC13-207ENST00000505108 MAPK8IP2Q13387 824 aaPredicted RBP20.04■□□□□ 0.8
TRAPPC13-207ENST00000505108 NCBP3Q53F19 620 aaKnown RBP20.02■□□□□ 0.8
TRAPPC13-207ENST00000505108 CNKSR2Q8WXI2 1034 aa19.89■□□□□ 0.77
TRAPPC13-207ENST00000505108 NPM3O75607 178 aaKnown RBP19.83■□□□□ 0.77
TRAPPC13-207ENST00000505108 DMRT2Q9Y5R5 561 aa19.61■□□□□ 0.73
TRAPPC13-207ENST00000505108 SLC4A1APQ9BWU0 796 aaKnown RBP19.46■□□□□ 0.71
TRAPPC13-207ENST00000505108 RNF216Q9NWF9 866 aaPredicted RBP19.44■□□□□ 0.7
TRAPPC13-207ENST00000505108 HOXD11P31277 338 aaPredicted RBP19.31■□□□□ 0.68
TRAPPC13-207ENST00000505108 EHMT2Q96KQ7 1210 aa19.26■□□□□ 0.67
TRAPPC13-207ENST00000505108 DNAJC5BQ9UF47 199 aa19.15■□□□□ 0.66
TRAPPC13-207ENST00000505108 POTEDQ86YR6 584 aa19.07■□□□□ 0.64
TRAPPC13-207ENST00000505108 CSRNP3Q8WYN3 585 aa18.93■□□□□ 0.62
TRAPPC13-207ENST00000505108 ZBTB22O15209 634 aa18.86■□□□□ 0.61
TRAPPC13-207ENST00000505108 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
TRAPPC13-207ENST00000505108 SLC4A2P04920 1241 aa18.69■□□□□ 0.58
TRAPPC13-207ENST00000505108 FOXD4L1Q9NU39 408 aa18.66■□□□□ 0.58
TRAPPC13-207ENST00000505108 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.38■□□□□ 0.53
TRAPPC13-207ENST00000505108 MYCNP04198 464 aaPredicted RBP18.26■□□□□ 0.51
TRAPPC13-207ENST00000505108 U3KPZ7 1027 aaPredicted RBP18.17■□□□□ 0.5
TRAPPC13-207ENST00000505108 ATXN8OSP0DMR3 200 aa17.96■□□□□ 0.47
TRAPPC13-207ENST00000505108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.9■□□□□ 0.46
TRAPPC13-207ENST00000505108 HNRNPUL2Q1KMD3 747 aaKnown RBP17.9■□□□□ 0.46
TRAPPC13-207ENST00000505108 RNF39Q9H2S5 420 aa17.9■□□□□ 0.46
TRAPPC13-207ENST00000505108 SAMD1Q6SPF0 538 aaPredicted RBP17.88■□□□□ 0.45
TRAPPC13-207ENST00000505108 ATF5Q9Y2D1 282 aaPredicted RBP17.87■□□□□ 0.45
TRAPPC13-207ENST00000505108 C1QBPQ07021 282 aaKnown RBP17.65■□□□□ 0.42
TRAPPC13-207ENST00000505108 APLP2Q06481 763 aa17.62■□□□□ 0.41
TRAPPC13-207ENST00000505108 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
TRAPPC13-207ENST00000505108 ZNF219Q9P2Y4 722 aaPredicted RBP17.48■□□□□ 0.39
TRAPPC13-207ENST00000505108 CAPN15O75808 1086 aa17.46■□□□□ 0.39
TRAPPC13-207ENST00000505108 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
TRAPPC13-207ENST00000505108 POLA2Q14181 598 aa17.25■□□□□ 0.35
TRAPPC13-207ENST00000505108 CACNB1Q02641 598 aaPredicted RBP17.22■□□□□ 0.35
TRAPPC13-207ENST00000505108 ABCB7O75027 752 aa17.2■□□□□ 0.34
TRAPPC13-207ENST00000505108 DSG3P32926 999 aa17.14■□□□□ 0.33
TRAPPC13-207ENST00000505108 MKRN4PQ13434 485 aaPredicted RBP17.09■□□□□ 0.33
TRAPPC13-207ENST00000505108 FKBP8Q14318 412 aa17.06■□□□□ 0.32
TRAPPC13-207ENST00000505108 FBLN2P98095 1184 aa16.96■□□□□ 0.31
TRAPPC13-207ENST00000505108 ZBTB12Q9Y330 459 aaPredicted RBP16.88■□□□□ 0.29
TRAPPC13-207ENST00000505108 SPDYE4A6NLX3 237 aa16.77■□□□□ 0.28
TRAPPC13-207ENST00000505108 OSCARQ8IYS5 282 aa16.66■□□□□ 0.26
TRAPPC13-207ENST00000505108 PROM2Q8N271 834 aa16.55■□□□□ 0.24
TRAPPC13-207ENST00000505108 ZNF692Q9BU19 519 aaPredicted RBP16.5■□□□□ 0.23
TRAPPC13-207ENST00000505108 SPDYE2BA6NHP3 402 aa16.49■□□□□ 0.23
TRAPPC13-207ENST00000505108 SPDYE6P0CI01 402 aa16.49■□□□□ 0.23
TRAPPC13-207ENST00000505108 SPDYE2Q495Y8 402 aa16.49■□□□□ 0.23
TRAPPC13-207ENST00000505108 SSUH2Q9Y2M2 353 aa16.44■□□□□ 0.22
TRAPPC13-207ENST00000505108 PABPN1Q86U42 306 aaKnown RBP eCLIP16.31■□□□□ 0.2
TRAPPC13-207ENST00000505108 FBXO3Q9UK99 471 aa16.29■□□□□ 0.2
TRAPPC13-207ENST00000505108 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
TRAPPC13-207ENST00000505108 VASPP50552 380 aaPredicted RBP16.13■□□□□ 0.17
TRAPPC13-207ENST00000505108 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
TRAPPC13-207ENST00000505108 REM2Q8IYK8 340 aaPredicted RBP16.02■□□□□ 0.16
TRAPPC13-207ENST00000505108 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.16
TRAPPC13-207ENST00000505108 STAG3Q9UJ98 1225 aa16.02■□□□□ 0.16
TRAPPC13-207ENST00000505108 IFNLR1Q8IU57 520 aaPredicted RBP15.98■□□□□ 0.15
TRAPPC13-207ENST00000505108 AMER1Q5JTC6 1135 aaPredicted RBP15.95■□□□□ 0.14
TRAPPC13-207ENST00000505108 SPDYE1Q8NFV5 336 aaPredicted RBP15.94■□□□□ 0.14
TRAPPC13-207ENST00000505108 CLEC11AQ9Y240 323 aa15.89■□□□□ 0.13
TRAPPC13-207ENST00000505108 MIER1Q8N108 512 aa15.86■□□□□ 0.13
TRAPPC13-207ENST00000505108 PLCD3Q8N3E9 789 aa15.85■□□□□ 0.13
TRAPPC13-207ENST00000505108 PITPNM1O00562 1244 aa15.84■□□□□ 0.13
TRAPPC13-207ENST00000505108 PRR29P0C7W0 189 aa15.76■□□□□ 0.11
TRAPPC13-207ENST00000505108 KLHL34Q8N239 644 aa15.76■□□□□ 0.11
TRAPPC13-207ENST00000505108 SPOCK2Q92563 424 aa15.68■□□□□ 0.1
TRAPPC13-207ENST00000505108 CREBZFQ9NS37 354 aa15.68■□□□□ 0.1
TRAPPC13-207ENST00000505108 PLEKHG5O94827 1062 aa15.65■□□□□ 0.1
TRAPPC13-207ENST00000505108 MNX1P50219 401 aaPredicted RBP15.58■□□□□ 0.08
TRAPPC13-207ENST00000505108 ZBTB47Q9UFB7 747 aaPredicted RBP15.58■□□□□ 0.08
TRAPPC13-207ENST00000505108 PKD2Q13563 968 aa15.55■□□□□ 0.08
TRAPPC13-207ENST00000505108 CHADLQ6NUI6 762 aa15.53■□□□□ 0.08
TRAPPC13-207ENST00000505108 CHRDL2Q6WN34 429 aa15.52■□□□□ 0.08
TRAPPC13-207ENST00000505108 FXR2P51116 673 aaKnown RBP eCLIP15.47■□□□□ 0.07
TRAPPC13-207ENST00000505108 NUBP1P53384 320 aa15.46■□□□□ 0.07
TRAPPC13-207ENST00000505108 PRKAR2AP13861 404 aaKnown RBP15.42■□□□□ 0.06
TRAPPC13-207ENST00000505108 PIP4P2Q8N4L2 257 aa15.41■□□□□ 0.06
TRAPPC13-207ENST00000505108 CIZ1Q9ULV3 898 aaPredicted RBP15.4■□□□□ 0.06
TRAPPC13-207ENST00000505108 FARP1Q9Y4F1 1045 aaPredicted RBP15.36■□□□□ 0.05
TRAPPC13-207ENST00000505108 ECM2O94769 699 aaPredicted RBP15.35■□□□□ 0.05
TRAPPC13-207ENST00000505108 RASEFQ8IZ41 740 aa15.35■□□□□ 0.05
TRAPPC13-207ENST00000505108 NPM1P06748 294 aaKnown RBP eCLIP15.33■□□□□ 0.04
TRAPPC13-207ENST00000505108 DCAF8Q5TAQ9 597 aa15.3■□□□□ 0.04
TRAPPC13-207ENST00000505108 GSE1Q14687 1217 aa15.28■□□□□ 0.04
TRAPPC13-207ENST00000505108 FAM212AQ96EL1 285 aa15.27■□□□□ 0.04
TRAPPC13-207ENST00000505108 RGL2O15211 777 aa15.24■□□□□ 0.03
TRAPPC13-207ENST00000505108 DCAF8L2P0C7V8 631 aa15.21■□□□□ 0.03
TRAPPC13-207ENST00000505108 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms