RNA–Protein interactions for RNA: ENST00000504974.1

RFC1-209, Transcript of replication factor C subunit 1, humanhuman

TSL 5

Gene RFC1, Length 495 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-209ENST00000504974 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
RFC1-209ENST00000504974 CHIC1Q5VXU3 224 aa17.02■□□□□ 0.32
RFC1-209ENST00000504974 PHF23Q9BUL5 403 aaPredicted RBP15.06■□□□□ 0
RFC1-209ENST00000504974 SENP3Q9H4L4 574 aaPredicted RBP14.96□□□□□ -0.01
RFC1-209ENST00000504974 FOXD1Q16676 465 aa14.06□□□□□ -0.16
RFC1-209ENST00000504974 PLPPR3Q6T4P5 718 aa13.65□□□□□ -0.22
RFC1-209ENST00000504974 PPP6R1Q9UPN7 881 aa13.42□□□□□ -0.26
RFC1-209ENST00000504974 ADRA2BP18089 450 aa13.38□□□□□ -0.27
RFC1-209ENST00000504974 PIAS4Q8N2W9 510 aaPredicted RBP13.16□□□□□ -0.3
RFC1-209ENST00000504974 POTEDQ86YR6 584 aa12.96□□□□□ -0.33
RFC1-209ENST00000504974 MSH5O43196 834 aa12.9□□□□□ -0.34
RFC1-209ENST00000504974 MAPK8IP2Q13387 824 aaPredicted RBP12.26□□□□□ -0.45
RFC1-209ENST00000504974 PPP4R3CPQ6ZMV5 832 aa12.08□□□□□ -0.48
RFC1-209ENST00000504974 SCAF1Q9H7N4 1312 aaKnown RBP12□□□□□ -0.49
RFC1-209ENST00000504974 DMRT2Q9Y5R5 561 aa11.94□□□□□ -0.5
RFC1-209ENST00000504974 CNKSR2Q8WXI2 1034 aa11.72□□□□□ -0.53
RFC1-209ENST00000504974 KCNA4P22459 653 aa11.6□□□□□ -0.55
RFC1-209ENST00000504974 HOXD11P31277 338 aaPredicted RBP11.58□□□□□ -0.56
RFC1-209ENST00000504974 NCBP3Q53F19 620 aaKnown RBP11.57□□□□□ -0.56
RFC1-209ENST00000504974 DCAF8L1A6NGE4 600 aa11.56□□□□□ -0.56
RFC1-209ENST00000504974 NPM3O75607 178 aaKnown RBP11.55□□□□□ -0.56
RFC1-209ENST00000504974 RNF216Q9NWF9 866 aaPredicted RBP11.54□□□□□ -0.56
RFC1-209ENST00000504974 RNF39Q9H2S5 420 aa11.1□□□□□ -0.63
RFC1-209ENST00000504974 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.09□□□□□ -0.635e-7■■□□□ 11.5
RFC1-209ENST00000504974 CACNB1Q02641 598 aaPredicted RBP11.03□□□□□ -0.64
RFC1-209ENST00000504974 DNAJC5BQ9UF47 199 aa11.02□□□□□ -0.65
RFC1-209ENST00000504974 SLC4A2P04920 1241 aa11□□□□□ -0.65
RFC1-209ENST00000504974 SLC4A1APQ9BWU0 796 aaKnown RBP10.92□□□□□ -0.66
RFC1-209ENST00000504974 U3KPZ7 1027 aaPredicted RBP10.91□□□□□ -0.66
RFC1-209ENST00000504974 C1QBPQ07021 282 aaKnown RBP10.89□□□□□ -0.67
RFC1-209ENST00000504974 SPINK5Q9NQ38 1064 aaPredicted RBP10.75□□□□□ -0.69
RFC1-209ENST00000504974 ZBTB22O15209 634 aa10.71□□□□□ -0.69
RFC1-209ENST00000504974 CAPN15O75808 1086 aa10.65□□□□□ -0.7
RFC1-209ENST00000504974 FOXD4L1Q9NU39 408 aa10.62□□□□□ -0.71
RFC1-209ENST00000504974 MYCNP04198 464 aaPredicted RBP10.57□□□□□ -0.72
RFC1-209ENST00000504974 TRHP20396 242 aaPredicted RBP10.57□□□□□ -0.72
RFC1-209ENST00000504974 ABCB7O75027 752 aa10.51□□□□□ -0.73
RFC1-209ENST00000504974 DSG3P32926 999 aa10.51□□□□□ -0.73
RFC1-209ENST00000504974 ATF5Q9Y2D1 282 aaPredicted RBP10.51□□□□□ -0.73
RFC1-209ENST00000504974 SAMD1Q6SPF0 538 aaPredicted RBP10.49□□□□□ -0.73
RFC1-209ENST00000504974 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.48□□□□□ -0.73
RFC1-209ENST00000504974 HNRNPUL2Q1KMD3 747 aaKnown RBP10.48□□□□□ -0.73
RFC1-209ENST00000504974 EHMT2Q96KQ7 1210 aa10.45□□□□□ -0.74
RFC1-209ENST00000504974 ZNF219Q9P2Y4 722 aaPredicted RBP10.4□□□□□ -0.74
RFC1-209ENST00000504974 APLP2Q06481 763 aa10.39□□□□□ -0.75
RFC1-209ENST00000504974 CSRNP3Q8WYN3 585 aa10.39□□□□□ -0.75
RFC1-209ENST00000504974 POLA2Q14181 598 aa10.32□□□□□ -0.76
RFC1-209ENST00000504974 ATXN8OSP0DMR3 200 aa10.17□□□□□ -0.78
RFC1-209ENST00000504974 OSCARQ8IYS5 282 aa10□□□□□ -0.81
RFC1-209ENST00000504974 MKRN4PQ13434 485 aaPredicted RBP9.99□□□□□ -0.81
RFC1-209ENST00000504974 POTEHQ6S545 545 aa9.99□□□□□ -0.81
RFC1-209ENST00000504974 ZBTB12Q9Y330 459 aaPredicted RBP9.93□□□□□ -0.82
RFC1-209ENST00000504974 FBLN2P98095 1184 aa9.88□□□□□ -0.83
RFC1-209ENST00000504974 RBM42Q9BTD8 480 aaKnown RBP9.87□□□□□ -0.83
RFC1-209ENST00000504974 AKT1S1Q96B36 256 aa9.76□□□□□ -0.85
RFC1-209ENST00000504974 REM2Q8IYK8 340 aaPredicted RBP9.75□□□□□ -0.85
RFC1-209ENST00000504974 SPDYE2BA6NHP3 402 aa9.72□□□□□ -0.85
RFC1-209ENST00000504974 SPDYE6P0CI01 402 aa9.72□□□□□ -0.85
RFC1-209ENST00000504974 SPDYE2Q495Y8 402 aa9.72□□□□□ -0.85
RFC1-209ENST00000504974 ZNF692Q9BU19 519 aaPredicted RBP9.72□□□□□ -0.85
RFC1-209ENST00000504974 CHRDL2Q6WN34 429 aa9.69□□□□□ -0.86
RFC1-209ENST00000504974 PITPNM1O00562 1244 aa9.67□□□□□ -0.86
RFC1-209ENST00000504974 SSUH2Q9Y2M2 353 aa9.66□□□□□ -0.86
RFC1-209ENST00000504974 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
RFC1-209ENST00000504974 CLEC11AQ9Y240 323 aa9.6□□□□□ -0.87
RFC1-209ENST00000504974 SPDYE4A6NLX3 237 aa9.57□□□□□ -0.88
RFC1-209ENST00000504974 PIP4P2Q8N4L2 257 aa9.55□□□□□ -0.88
RFC1-209ENST00000504974 SPDYE1Q8NFV5 336 aaPredicted RBP9.5□□□□□ -0.89
RFC1-209ENST00000504974 FXR2P51116 673 aaKnown RBP eCLIP9.49□□□□□ -0.891e-7■■■□□ 17.4
RFC1-209ENST00000504974 CHADLQ6NUI6 762 aa9.45□□□□□ -0.9
RFC1-209ENST00000504974 PRKAR2AP13861 404 aaKnown RBP9.41□□□□□ -0.9
RFC1-209ENST00000504974 PRR29P0C7W0 189 aa9.4□□□□□ -0.9
RFC1-209ENST00000504974 FKBP8Q14318 412 aa9.4□□□□□ -0.9
RFC1-209ENST00000504974 EVX2Q03828 476 aa9.33□□□□□ -0.92
RFC1-209ENST00000504974 HAX1O00165 279 aa9.32□□□□□ -0.92
RFC1-209ENST00000504974 PROM2Q8N271 834 aa9.32□□□□□ -0.92
RFC1-209ENST00000504974 CREBZFQ9NS37 354 aa9.28□□□□□ -0.92
RFC1-209ENST00000504974 STAG3Q9UJ98 1225 aa9.25□□□□□ -0.93
RFC1-209ENST00000504974 FARP1Q9Y4F1 1045 aaPredicted RBP9.22□□□□□ -0.93
RFC1-209ENST00000504974 C19orf67A6NJJ6 358 aa9.17□□□□□ -0.94
RFC1-209ENST00000504974 SP7Q8TDD2 431 aaPredicted RBP9.17□□□□□ -0.94
RFC1-209ENST00000504974 MNX1P50219 401 aaPredicted RBP9.15□□□□□ -0.94
RFC1-209ENST00000504974 MIER1Q8N108 512 aa9.12□□□□□ -0.95
RFC1-209ENST00000504974 CD44P16070 742 aaKnown RBP9.11□□□□□ -0.95
RFC1-209ENST00000504974 PLCD3Q8N3E9 789 aa9.06□□□□□ -0.96
RFC1-209ENST00000504974 ZRANB1Q9UGI0 708 aa9.04□□□□□ -0.96
RFC1-209ENST00000504974 GABBR2O75899 941 aa9.02□□□□□ -0.97
RFC1-209ENST00000504974 TSPYL2Q9H2G4 693 aaPredicted RBP9□□□□□ -0.97
RFC1-209ENST00000504974 NPM1P06748 294 aaKnown RBP eCLIP8.99□□□□□ -0.97
RFC1-209ENST00000504974 PHF12Q96QT6 1004 aa8.99□□□□□ -0.97
RFC1-209ENST00000504974 RASEFQ8IZ41 740 aa8.97□□□□□ -0.97
RFC1-209ENST00000504974 VASPP50552 380 aaPredicted RBP8.95□□□□□ -0.98
RFC1-209ENST00000504974 FBXO3Q9UK99 471 aa8.95□□□□□ -0.98
RFC1-209ENST00000504974 PLEKHG5O94827 1062 aa8.93□□□□□ -0.98
RFC1-209ENST00000504974 ZNF579Q8NAF0 562 aaKnown RBP8.93□□□□□ -0.98
RFC1-209ENST00000504974 GALR2O43603 387 aaPredicted RBP8.92□□□□□ -0.98
RFC1-209ENST00000504974 NUBP1P53384 320 aa8.91□□□□□ -0.98
RFC1-209ENST00000504974 POTEIP0CG38 1075 aa8.9□□□□□ -0.98
RFC1-209ENST00000504974 PAK3O75914 559 aaPredicted RBP8.89□□□□□ -0.99
RFC1-209ENST00000504974 IFNLR1Q8IU57 520 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms