RNA–Protein interactions for RNA: ENST00000504016.1

SUB1-204, Transcript of SUB1 homolog, transcriptional regulator, humanhuman

TSL 3

Gene SUB1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1-204ENST00000504016 AEBP2Q6ZN18 517 aaPredicted RBP27.32■■□□□ 1.96
SUB1-204ENST00000504016 CHIC1Q5VXU3 224 aa26.15■■□□□ 1.78
SUB1-204ENST00000504016 SENP3Q9H4L4 574 aaPredicted RBP23.31■■□□□ 1.32
SUB1-204ENST00000504016 PHF23Q9BUL5 403 aaPredicted RBP23.05■■□□□ 1.28
SUB1-204ENST00000504016 FOXD1Q16676 465 aa21.69■■□□□ 1.06
SUB1-204ENST00000504016 PLPPR3Q6T4P5 718 aa21.01■□□□□ 0.95
SUB1-204ENST00000504016 PPP6R1Q9UPN7 881 aa20.43■□□□□ 0.86
SUB1-204ENST00000504016 ADRA2BP18089 450 aa20.39■□□□□ 0.85
SUB1-204ENST00000504016 PIAS4Q8N2W9 510 aaPredicted RBP20.34■□□□□ 0.85
SUB1-204ENST00000504016 MSH5O43196 834 aa20.24■□□□□ 0.83
SUB1-204ENST00000504016 POTEDQ86YR6 584 aa19.42■□□□□ 0.7
SUB1-204ENST00000504016 SCAF1Q9H7N4 1312 aaKnown RBP18.7■□□□□ 0.58
SUB1-204ENST00000504016 MAPK8IP2Q13387 824 aaPredicted RBP18.68■□□□□ 0.58
SUB1-204ENST00000504016 DMRT2Q9Y5R5 561 aa18.49■□□□□ 0.55
SUB1-204ENST00000504016 PPP4R3CPQ6ZMV5 832 aa18.44■□□□□ 0.54
SUB1-204ENST00000504016 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
SUB1-204ENST00000504016 HOXD11P31277 338 aaPredicted RBP17.88■□□□□ 0.45
SUB1-204ENST00000504016 RNF216Q9NWF9 866 aaPredicted RBP17.83■□□□□ 0.44
SUB1-204ENST00000504016 DCAF8L1A6NGE4 600 aa17.82■□□□□ 0.44
SUB1-204ENST00000504016 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
SUB1-204ENST00000504016 NPM3O75607 178 aaKnown RBP17.52■□□□□ 0.4
SUB1-204ENST00000504016 KCNA4P22459 653 aa17.35■□□□□ 0.37
SUB1-204ENST00000504016 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
SUB1-204ENST00000504016 RNF39Q9H2S5 420 aa17.27■□□□□ 0.36
SUB1-204ENST00000504016 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
SUB1-204ENST00000504016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.11■□□□□ 0.33
SUB1-204ENST00000504016 C1QBPQ07021 282 aaKnown RBP17.05■□□□□ 0.32
SUB1-204ENST00000504016 U3KPZ7 1027 aaPredicted RBP16.71■□□□□ 0.27
SUB1-204ENST00000504016 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
SUB1-204ENST00000504016 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
SUB1-204ENST00000504016 CAPN15O75808 1086 aa16.44■□□□□ 0.22
SUB1-204ENST00000504016 SPINK5Q9NQ38 1064 aaPredicted RBP16.43■□□□□ 0.22
SUB1-204ENST00000504016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
SUB1-204ENST00000504016 HNRNPUL2Q1KMD3 747 aaKnown RBP16.35■□□□□ 0.21
SUB1-204ENST00000504016 APLP2Q06481 763 aa16.32■□□□□ 0.2
SUB1-204ENST00000504016 DSG3P32926 999 aa16.25■□□□□ 0.19
SUB1-204ENST00000504016 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
SUB1-204ENST00000504016 TRHP20396 242 aaPredicted RBP16.22■□□□□ 0.19
SUB1-204ENST00000504016 MYCNP04198 464 aaPredicted RBP16.21■□□□□ 0.19
SUB1-204ENST00000504016 ZNF219Q9P2Y4 722 aaPredicted RBP16.17■□□□□ 0.18
SUB1-204ENST00000504016 FOXD4L1Q9NU39 408 aa16.14■□□□□ 0.17
SUB1-204ENST00000504016 ABCB7O75027 752 aa16.06■□□□□ 0.16
SUB1-204ENST00000504016 ZBTB22O15209 634 aa15.93■□□□□ 0.14
SUB1-204ENST00000504016 POLA2Q14181 598 aa15.81■□□□□ 0.12
SUB1-204ENST00000504016 ATF5Q9Y2D1 282 aaPredicted RBP15.8■□□□□ 0.12
SUB1-204ENST00000504016 ATXN8OSP0DMR3 200 aa15.62■□□□□ 0.09
SUB1-204ENST00000504016 RBM42Q9BTD8 480 aaKnown RBP15.52■□□□□ 0.08
SUB1-204ENST00000504016 ZBTB12Q9Y330 459 aaPredicted RBP15.5■□□□□ 0.07
SUB1-204ENST00000504016 CSRNP3Q8WYN3 585 aa15.4■□□□□ 0.06
SUB1-204ENST00000504016 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
SUB1-204ENST00000504016 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
SUB1-204ENST00000504016 POTEHQ6S545 545 aa15.27■□□□□ 0.04
SUB1-204ENST00000504016 FBLN2P98095 1184 aa15.23■□□□□ 0.03
SUB1-204ENST00000504016 AKT1S1Q96B36 256 aa15.2■□□□□ 0.02
SUB1-204ENST00000504016 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
SUB1-204ENST00000504016 MKRN4PQ13434 485 aaPredicted RBP15.07■□□□□ 0
SUB1-204ENST00000504016 REM2Q8IYK8 340 aaPredicted RBP15.06■□□□□ 0
SUB1-204ENST00000504016 SPDYE2BA6NHP3 402 aa15.03■□□□□ -0
SUB1-204ENST00000504016 SPDYE6P0CI01 402 aa15.03■□□□□ -0
SUB1-204ENST00000504016 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
SUB1-204ENST00000504016 ZNF692Q9BU19 519 aaPredicted RBP14.91□□□□□ -0.02
SUB1-204ENST00000504016 PITPNM1O00562 1244 aa14.88□□□□□ -0.03
SUB1-204ENST00000504016 SSUH2Q9Y2M2 353 aa14.82□□□□□ -0.04
SUB1-204ENST00000504016 PIP4P2Q8N4L2 257 aa14.77□□□□□ -0.05
SUB1-204ENST00000504016 SPDYE1Q8NFV5 336 aaPredicted RBP14.74□□□□□ -0.05
SUB1-204ENST00000504016 CLEC11AQ9Y240 323 aa14.74□□□□□ -0.05
SUB1-204ENST00000504016 FXR2P51116 673 aaKnown RBP eCLIP14.71□□□□□ -0.05
SUB1-204ENST00000504016 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
SUB1-204ENST00000504016 PRKAR2AP13861 404 aaKnown RBP14.52□□□□□ -0.09
SUB1-204ENST00000504016 SPDYE4A6NLX3 237 aa14.51□□□□□ -0.09
SUB1-204ENST00000504016 HAX1O00165 279 aa14.51□□□□□ -0.09
SUB1-204ENST00000504016 PRR29P0C7W0 189 aa14.51□□□□□ -0.09
SUB1-204ENST00000504016 CHADLQ6NUI6 762 aa14.41□□□□□ -0.1
SUB1-204ENST00000504016 SP7Q8TDD2 431 aaPredicted RBP14.4□□□□□ -0.1
SUB1-204ENST00000504016 STAG3Q9UJ98 1225 aa14.34□□□□□ -0.11
SUB1-204ENST00000504016 EVX2Q03828 476 aa14.28□□□□□ -0.12
SUB1-204ENST00000504016 C19orf67A6NJJ6 358 aa14.23□□□□□ -0.13
SUB1-204ENST00000504016 FARP1Q9Y4F1 1045 aaPredicted RBP14.2□□□□□ -0.14
SUB1-204ENST00000504016 CREBZFQ9NS37 354 aa14.15□□□□□ -0.14
SUB1-204ENST00000504016 PROM2Q8N271 834 aa14.12□□□□□ -0.15
SUB1-204ENST00000504016 CD44P16070 742 aaKnown RBP14.07□□□□□ -0.16
SUB1-204ENST00000504016 GABBR2O75899 941 aa13.99□□□□□ -0.17
SUB1-204ENST00000504016 FKBP8Q14318 412 aa13.99□□□□□ -0.17
SUB1-204ENST00000504016 NPM1P06748 294 aaKnown RBP eCLIP13.94□□□□□ -0.18
SUB1-204ENST00000504016 ZRANB1Q9UGI0 708 aa13.92□□□□□ -0.18
SUB1-204ENST00000504016 MNX1P50219 401 aaPredicted RBP13.9□□□□□ -0.18
SUB1-204ENST00000504016 PAK3O75914 559 aaPredicted RBP13.87□□□□□ -0.19
SUB1-204ENST00000504016 MIER1Q8N108 512 aa13.85□□□□□ -0.19
SUB1-204ENST00000504016 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
SUB1-204ENST00000504016 CLCN6P51797 869 aa13.84□□□□□ -0.19
SUB1-204ENST00000504016 ZNF579Q8NAF0 562 aaKnown RBP13.83□□□□□ -0.2
SUB1-204ENST00000504016 PLCD3Q8N3E9 789 aa13.77□□□□□ -0.21
SUB1-204ENST00000504016 PHF12Q96QT6 1004 aa13.72□□□□□ -0.21
SUB1-204ENST00000504016 DCBLD2Q96PD2 775 aa13.7□□□□□ -0.22
SUB1-204ENST00000504016 TSPYL2Q9H2G4 693 aaPredicted RBP13.7□□□□□ -0.22
SUB1-204ENST00000504016 GALR2O43603 387 aaPredicted RBP13.67□□□□□ -0.22
SUB1-204ENST00000504016 POTEIP0CG38 1075 aa13.66□□□□□ -0.22
SUB1-204ENST00000504016 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
SUB1-204ENST00000504016 ZBTB47Q9UFB7 747 aaPredicted RBP13.64□□□□□ -0.23
SUB1-204ENST00000504016 RASEFQ8IZ41 740 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms