RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 AEBP2Q6ZN18 517 aaPredicted RBP31.17■■■□□ 2.58
UBE3D-205ENST00000503942 CHIC1Q5VXU3 224 aa29.41■■■□□ 2.3
UBE3D-205ENST00000503942 SENP3Q9H4L4 574 aaPredicted RBP26.64■■□□□ 1.86
UBE3D-205ENST00000503942 PHF23Q9BUL5 403 aaPredicted RBP26.23■■□□□ 1.79
UBE3D-205ENST00000503942 FOXD1Q16676 465 aa24.83■■□□□ 1.57
UBE3D-205ENST00000503942 PLPPR3Q6T4P5 718 aa23.4■■□□□ 1.34
UBE3D-205ENST00000503942 MSH5O43196 834 aa23.33■■□□□ 1.33
UBE3D-205ENST00000503942 POTEDQ86YR6 584 aa23.16■■□□□ 1.3
UBE3D-205ENST00000503942 PIAS4Q8N2W9 510 aaPredicted RBP23.16■■□□□ 1.3
UBE3D-205ENST00000503942 PPP6R1Q9UPN7 881 aa23.05■■□□□ 1.28
UBE3D-205ENST00000503942 ADRA2BP18089 450 aa22.96■■□□□ 1.27
UBE3D-205ENST00000503942 MAPK8IP2Q13387 824 aaPredicted RBP21.13■□□□□ 0.97
UBE3D-205ENST00000503942 DMRT2Q9Y5R5 561 aa21.1■□□□□ 0.97
UBE3D-205ENST00000503942 SCAF1Q9H7N4 1312 aaKnown RBP21.02■□□□□ 0.95
UBE3D-205ENST00000503942 PPP4R3CPQ6ZMV5 832 aa20.47■□□□□ 0.87
UBE3D-205ENST00000503942 HOXD11P31277 338 aaPredicted RBP20.24■□□□□ 0.83
UBE3D-205ENST00000503942 DCAF8L1A6NGE4 600 aa20.18■□□□□ 0.82
UBE3D-205ENST00000503942 CNKSR2Q8WXI2 1034 aa20.15■□□□□ 0.82
UBE3D-205ENST00000503942 CACNB1Q02641 598 aaPredicted RBP20.11■□□□□ 0.81
UBE3D-205ENST00000503942 RNF216Q9NWF9 866 aaPredicted RBP20.03■□□□□ 0.8
UBE3D-205ENST00000503942 RNF39Q9H2S5 420 aa19.9■□□□□ 0.78
UBE3D-205ENST00000503942 NCBP3Q53F19 620 aaKnown RBP19.64■□□□□ 0.73
UBE3D-205ENST00000503942 DNAJC5BQ9UF47 199 aa19.61■□□□□ 0.73
UBE3D-205ENST00000503942 C1QBPQ07021 282 aaKnown RBP19.6■□□□□ 0.73
UBE3D-205ENST00000503942 NPM3O75607 178 aaKnown RBP19.36■□□□□ 0.69
UBE3D-205ENST00000503942 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.25■□□□□ 0.67
UBE3D-205ENST00000503942 U3KPZ7 1027 aaPredicted RBP18.85■□□□□ 0.61
UBE3D-205ENST00000503942 KCNA4P22459 653 aa18.8■□□□□ 0.6
UBE3D-205ENST00000503942 SPINK5Q9NQ38 1064 aaPredicted RBP18.62■□□□□ 0.57
UBE3D-205ENST00000503942 CAPN15O75808 1086 aa18.59■□□□□ 0.57
UBE3D-205ENST00000503942 DSG3P32926 999 aa18.55■□□□□ 0.56
UBE3D-205ENST00000503942 SLC4A2P04920 1241 aa18.54■□□□□ 0.56
UBE3D-205ENST00000503942 APLP2Q06481 763 aa18.31■□□□□ 0.52
UBE3D-205ENST00000503942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.24■□□□□ 0.51
UBE3D-205ENST00000503942 HNRNPUL2Q1KMD3 747 aaKnown RBP18.24■□□□□ 0.51
UBE3D-205ENST00000503942 TRHP20396 242 aaPredicted RBP18.23■□□□□ 0.51
UBE3D-205ENST00000503942 ZNF219Q9P2Y4 722 aaPredicted RBP18.23■□□□□ 0.51
UBE3D-205ENST00000503942 ABCB7O75027 752 aa18.13■□□□□ 0.49
UBE3D-205ENST00000503942 SAMD1Q6SPF0 538 aaPredicted RBP18.13■□□□□ 0.49
UBE3D-205ENST00000503942 POTEHQ6S545 545 aa18.09■□□□□ 0.49
UBE3D-205ENST00000503942 MYCNP04198 464 aaPredicted RBP17.92■□□□□ 0.46
UBE3D-205ENST00000503942 RBM42Q9BTD8 480 aaKnown RBP17.72■□□□□ 0.43
UBE3D-205ENST00000503942 POLA2Q14181 598 aa17.7■□□□□ 0.42
UBE3D-205ENST00000503942 SLC4A1APQ9BWU0 796 aaKnown RBP17.7■□□□□ 0.42
UBE3D-205ENST00000503942 FOXD4L1Q9NU39 408 aa17.61■□□□□ 0.41
UBE3D-205ENST00000503942 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
UBE3D-205ENST00000503942 CHRDL2Q6WN34 429 aa17.4■□□□□ 0.38
UBE3D-205ENST00000503942 ZBTB12Q9Y330 459 aaPredicted RBP17.38■□□□□ 0.37
UBE3D-205ENST00000503942 ZBTB22O15209 634 aa17.29■□□□□ 0.36
UBE3D-205ENST00000503942 AKT1S1Q96B36 256 aa17.26■□□□□ 0.35
UBE3D-205ENST00000503942 OSCARQ8IYS5 282 aa17.18■□□□□ 0.34
UBE3D-205ENST00000503942 ATXN8OSP0DMR3 200 aa17.11■□□□□ 0.33
UBE3D-205ENST00000503942 REM2Q8IYK8 340 aaPredicted RBP17.1■□□□□ 0.33
UBE3D-205ENST00000503942 PIP4P2Q8N4L2 257 aa16.94■□□□□ 0.3
UBE3D-205ENST00000503942 PITPNM1O00562 1244 aa16.92■□□□□ 0.3
UBE3D-205ENST00000503942 SP7Q8TDD2 431 aaPredicted RBP16.85■□□□□ 0.29
UBE3D-205ENST00000503942 FBLN2P98095 1184 aa16.84■□□□□ 0.29
UBE3D-205ENST00000503942 SPDYE2BA6NHP3 402 aa16.81■□□□□ 0.28
UBE3D-205ENST00000503942 SPDYE6P0CI01 402 aa16.81■□□□□ 0.28
UBE3D-205ENST00000503942 FXR2P51116 673 aaKnown RBP eCLIP16.81■□□□□ 0.28
UBE3D-205ENST00000503942 SPDYE2Q495Y8 402 aa16.81■□□□□ 0.28
UBE3D-205ENST00000503942 MKRN4PQ13434 485 aaPredicted RBP16.7■□□□□ 0.26
UBE3D-205ENST00000503942 HAX1O00165 279 aa16.66■□□□□ 0.26
UBE3D-205ENST00000503942 SSUH2Q9Y2M2 353 aa16.58■□□□□ 0.24
UBE3D-205ENST00000503942 SPDYE1Q8NFV5 336 aaPredicted RBP16.56■□□□□ 0.24
UBE3D-205ENST00000503942 ZNF692Q9BU19 519 aaPredicted RBP16.54■□□□□ 0.24
UBE3D-205ENST00000503942 CLEC11AQ9Y240 323 aa16.5■□□□□ 0.23
UBE3D-205ENST00000503942 PRKAR2AP13861 404 aaKnown RBP16.46■□□□□ 0.23
UBE3D-205ENST00000503942 EVX2Q03828 476 aa16.45■□□□□ 0.22
UBE3D-205ENST00000503942 PABPN1Q86U42 306 aaKnown RBP eCLIP16.3■□□□□ 0.2
UBE3D-205ENST00000503942 C19orf67A6NJJ6 358 aa16.29■□□□□ 0.2
UBE3D-205ENST00000503942 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
UBE3D-205ENST00000503942 PRR29P0C7W0 189 aa16.21■□□□□ 0.19
UBE3D-205ENST00000503942 CHADLQ6NUI6 762 aa16.21■□□□□ 0.19
UBE3D-205ENST00000503942 GABBR2O75899 941 aa16.07■□□□□ 0.16
UBE3D-205ENST00000503942 FARP1Q9Y4F1 1045 aaPredicted RBP15.99■□□□□ 0.15
UBE3D-205ENST00000503942 EHMT2Q96KQ7 1210 aa15.95■□□□□ 0.14
UBE3D-205ENST00000503942 CD44P16070 742 aaKnown RBP15.94■□□□□ 0.14
UBE3D-205ENST00000503942 STAG3Q9UJ98 1225 aa15.82■□□□□ 0.12
UBE3D-205ENST00000503942 SPDYE4A6NLX3 237 aa15.79■□□□□ 0.12
UBE3D-205ENST00000503942 CREBZFQ9NS37 354 aa15.79■□□□□ 0.12
UBE3D-205ENST00000503942 CLCN6P51797 869 aa15.78■□□□□ 0.12
UBE3D-205ENST00000503942 LHX8Q68G74 356 aa15.78■□□□□ 0.12
UBE3D-205ENST00000503942 POTEIP0CG38 1075 aa15.74■□□□□ 0.11
UBE3D-205ENST00000503942 ZNF579Q8NAF0 562 aaKnown RBP15.71■□□□□ 0.11
UBE3D-205ENST00000503942 ZRANB1Q9UGI0 708 aa15.66■□□□□ 0.1
UBE3D-205ENST00000503942 DCBLD2Q96PD2 775 aa15.59■□□□□ 0.09
UBE3D-205ENST00000503942 MNX1P50219 401 aaPredicted RBP15.51■□□□□ 0.07
UBE3D-205ENST00000503942 GALR2O43603 387 aaPredicted RBP15.5■□□□□ 0.07
UBE3D-205ENST00000503942 PAK3O75914 559 aaPredicted RBP15.5■□□□□ 0.07
UBE3D-205ENST00000503942 NPM1P06748 294 aaKnown RBP eCLIP15.48■□□□□ 0.07
UBE3D-205ENST00000503942 PHF12Q96QT6 1004 aa15.45■□□□□ 0.06
UBE3D-205ENST00000503942 PROM2Q8N271 834 aa15.43■□□□□ 0.06
UBE3D-205ENST00000503942 MS4A3Q96HJ5 214 aa15.23■□□□□ 0.03
UBE3D-205ENST00000503942 PELP1Q8IZL8 1130 aaKnown RBP15.22■□□□□ 0.03
UBE3D-205ENST00000503942 POTEB2H3BUK9 544 aa15.21■□□□□ 0.03
UBE3D-205ENST00000503942 OTUD5Q96G74 571 aa15.2■□□□□ 0.02
UBE3D-205ENST00000503942 ASTLQ6HA08 431 aaPredicted RBP15.19■□□□□ 0.02
UBE3D-205ENST00000503942 TSPYL2Q9H2G4 693 aaPredicted RBP15.18■□□□□ 0.02
UBE3D-205ENST00000503942 CCDC61Q9Y6R9 512 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms