RNA–Protein interactions for RNA: ENST00000502706.1

RFC1-204, Transcript of replication factor C subunit 1, humanhuman

TSL 5

Gene RFC1, Length 690 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-204ENST00000502706 AEBP2Q6ZN18 517 aaPredicted RBP28.71■■■□□ 2.19
RFC1-204ENST00000502706 CHIC1Q5VXU3 224 aa26.92■■□□□ 1.9
RFC1-204ENST00000502706 SENP3Q9H4L4 574 aaPredicted RBP24.61■■□□□ 1.53
RFC1-204ENST00000502706 PHF23Q9BUL5 403 aaPredicted RBP24.2■■□□□ 1.46
RFC1-204ENST00000502706 FOXD1Q16676 465 aa22.93■■□□□ 1.26
RFC1-204ENST00000502706 POTEDQ86YR6 584 aa21.77■■□□□ 1.08
RFC1-204ENST00000502706 MSH5O43196 834 aa21.68■■□□□ 1.06
RFC1-204ENST00000502706 PLPPR3Q6T4P5 718 aa21.36■■□□□ 1.01
RFC1-204ENST00000502706 PIAS4Q8N2W9 510 aaPredicted RBP21.36■■□□□ 1.01
RFC1-204ENST00000502706 PPP6R1Q9UPN7 881 aa21.12■□□□□ 0.97
RFC1-204ENST00000502706 ADRA2BP18089 450 aa21.04■□□□□ 0.96
RFC1-204ENST00000502706 DMRT2Q9Y5R5 561 aa19.45■□□□□ 0.7
RFC1-204ENST00000502706 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
RFC1-204ENST00000502706 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
RFC1-204ENST00000502706 CACNB1Q02641 598 aaPredicted RBP18.8■□□□□ 0.6
RFC1-204ENST00000502706 DCAF8L1A6NGE4 600 aa18.64■□□□□ 0.57
RFC1-204ENST00000502706 PPP4R3CPQ6ZMV5 832 aa18.64■□□□□ 0.57
RFC1-204ENST00000502706 HOXD11P31277 338 aaPredicted RBP18.58■□□□□ 0.56
RFC1-204ENST00000502706 RNF39Q9H2S5 420 aa18.43■□□□□ 0.54
RFC1-204ENST00000502706 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
RFC1-204ENST00000502706 RNF216Q9NWF9 866 aaPredicted RBP18.34■□□□□ 0.53
RFC1-204ENST00000502706 C1QBPQ07021 282 aaKnown RBP18.17■□□□□ 0.5
RFC1-204ENST00000502706 DNAJC5BQ9UF47 199 aa18.07■□□□□ 0.48
RFC1-204ENST00000502706 NCBP3Q53F19 620 aaKnown RBP17.85■□□□□ 0.45
RFC1-204ENST00000502706 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.7■□□□□ 0.423e-6■□□□□ 8.3
RFC1-204ENST00000502706 NPM3O75607 178 aaKnown RBP17.54■□□□□ 0.4
RFC1-204ENST00000502706 U3KPZ7 1027 aaPredicted RBP17.26■□□□□ 0.35
RFC1-204ENST00000502706 CAPN15O75808 1086 aa17.12■□□□□ 0.33
RFC1-204ENST00000502706 DSG3P32926 999 aa17.12■□□□□ 0.33
RFC1-204ENST00000502706 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
RFC1-204ENST00000502706 POTEHQ6S545 545 aa16.99■□□□□ 0.31
RFC1-204ENST00000502706 SLC4A2P04920 1241 aa16.85■□□□□ 0.29
RFC1-204ENST00000502706 KCNA4P22459 653 aa16.84■□□□□ 0.29
RFC1-204ENST00000502706 APLP2Q06481 763 aa16.82■□□□□ 0.28
RFC1-204ENST00000502706 ZNF219Q9P2Y4 722 aaPredicted RBP16.75■□□□□ 0.27
RFC1-204ENST00000502706 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
RFC1-204ENST00000502706 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
RFC1-204ENST00000502706 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
RFC1-204ENST00000502706 ABCB7O75027 752 aa16.67■□□□□ 0.26
RFC1-204ENST00000502706 SAMD1Q6SPF0 538 aaPredicted RBP16.58■□□□□ 0.24
RFC1-204ENST00000502706 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
RFC1-204ENST00000502706 MYCNP04198 464 aaPredicted RBP16.26■□□□□ 0.19
RFC1-204ENST00000502706 POLA2Q14181 598 aa16.22■□□□□ 0.19
RFC1-204ENST00000502706 CHRDL2Q6WN34 429 aa16.15■□□□□ 0.18
RFC1-204ENST00000502706 AKT1S1Q96B36 256 aa15.92■□□□□ 0.14
RFC1-204ENST00000502706 ZBTB12Q9Y330 459 aaPredicted RBP15.92■□□□□ 0.14
RFC1-204ENST00000502706 FOXD4L1Q9NU39 408 aa15.88■□□□□ 0.13
RFC1-204ENST00000502706 ATF5Q9Y2D1 282 aaPredicted RBP15.86■□□□□ 0.13
RFC1-204ENST00000502706 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
RFC1-204ENST00000502706 SP7Q8TDD2 431 aaPredicted RBP15.76■□□□□ 0.11
RFC1-204ENST00000502706 REM2Q8IYK8 340 aaPredicted RBP15.74■□□□□ 0.11
RFC1-204ENST00000502706 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
RFC1-204ENST00000502706 PIP4P2Q8N4L2 257 aa15.67■□□□□ 0.1
RFC1-204ENST00000502706 PITPNM1O00562 1244 aa15.57■□□□□ 0.08
RFC1-204ENST00000502706 FXR2P51116 673 aaKnown RBP eCLIP15.53■□□□□ 0.083e-7■■■□□ 19
RFC1-204ENST00000502706 HAX1O00165 279 aa15.5■□□□□ 0.07
RFC1-204ENST00000502706 ZBTB22O15209 634 aa15.47■□□□□ 0.07
RFC1-204ENST00000502706 ATXN8OSP0DMR3 200 aa15.46■□□□□ 0.07
RFC1-204ENST00000502706 SPDYE2BA6NHP3 402 aa15.37■□□□□ 0.05
RFC1-204ENST00000502706 SPDYE6P0CI01 402 aa15.37■□□□□ 0.05
RFC1-204ENST00000502706 SPDYE2Q495Y8 402 aa15.37■□□□□ 0.05
RFC1-204ENST00000502706 FBLN2P98095 1184 aa15.34■□□□□ 0.05
RFC1-204ENST00000502706 EVX2Q03828 476 aa15.23■□□□□ 0.03
RFC1-204ENST00000502706 SPDYE1Q8NFV5 336 aaPredicted RBP15.2■□□□□ 0.02
RFC1-204ENST00000502706 PRKAR2AP13861 404 aaKnown RBP15.17■□□□□ 0.02
RFC1-204ENST00000502706 CLEC11AQ9Y240 323 aa15.15■□□□□ 0.02
RFC1-204ENST00000502706 MKRN4PQ13434 485 aaPredicted RBP15.12■□□□□ 0.01
RFC1-204ENST00000502706 SSUH2Q9Y2M2 353 aa15.11■□□□□ 0.01
RFC1-204ENST00000502706 ZNF692Q9BU19 519 aaPredicted RBP15.1■□□□□ 0.01
RFC1-204ENST00000502706 C19orf67A6NJJ6 358 aa15.05■□□□□ -0
RFC1-204ENST00000502706 GABBR2O75899 941 aa14.91□□□□□ -0.02
RFC1-204ENST00000502706 CHADLQ6NUI6 762 aa14.88□□□□□ -0.03
RFC1-204ENST00000502706 PRR29P0C7W0 189 aa14.87□□□□□ -0.03
RFC1-204ENST00000502706 PABPN1Q86U42 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
RFC1-204ENST00000502706 LHX8Q68G74 356 aa14.77□□□□□ -0.05
RFC1-204ENST00000502706 CD44P16070 742 aaKnown RBP14.67□□□□□ -0.06
RFC1-204ENST00000502706 FARP1Q9Y4F1 1045 aaPredicted RBP14.67□□□□□ -0.06
RFC1-204ENST00000502706 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
RFC1-204ENST00000502706 CLCN6P51797 869 aa14.62□□□□□ -0.07
RFC1-204ENST00000502706 POTEIP0CG38 1075 aa14.57□□□□□ -0.08
RFC1-204ENST00000502706 ZNF579Q8NAF0 562 aaKnown RBP14.44□□□□□ -0.1
RFC1-204ENST00000502706 DCBLD2Q96PD2 775 aa14.44□□□□□ -0.1
RFC1-204ENST00000502706 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
RFC1-204ENST00000502706 ZRANB1Q9UGI0 708 aa14.41□□□□□ -0.1
RFC1-204ENST00000502706 STAG3Q9UJ98 1225 aa14.41□□□□□ -0.1
RFC1-204ENST00000502706 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
RFC1-204ENST00000502706 GALR2O43603 387 aaPredicted RBP14.26□□□□□ -0.13
RFC1-204ENST00000502706 SPDYE4A6NLX3 237 aa14.24□□□□□ -0.13
RFC1-204ENST00000502706 PAK3O75914 559 aaPredicted RBP14.24□□□□□ -0.13
RFC1-204ENST00000502706 NPM1P06748 294 aaKnown RBP eCLIP14.15□□□□□ -0.14
RFC1-204ENST00000502706 PHF12Q96QT6 1004 aa14.15□□□□□ -0.14
RFC1-204ENST00000502706 OTUD5Q96G74 571 aa14.12□□□□□ -0.15
RFC1-204ENST00000502706 PLSCR2Q9NRY7 297 aa14.12□□□□□ -0.15
RFC1-204ENST00000502706 MNX1P50219 401 aaPredicted RBP14.09□□□□□ -0.15
RFC1-204ENST00000502706 POTEB2H3BUK9 544 aa14.07□□□□□ -0.16
RFC1-204ENST00000502706 PELP1Q8IZL8 1130 aaKnown RBP14.01□□□□□ -0.17
RFC1-204ENST00000502706 ASTLQ6HA08 431 aaPredicted RBP13.96□□□□□ -0.17
RFC1-204ENST00000502706 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
RFC1-204ENST00000502706 METRNQ9UJH8 293 aa13.94□□□□□ -0.18
RFC1-204ENST00000502706 POTEMA6NI47 508 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms