RNA–Protein interactions for RNA: ENST00000497722.2

PSPC1-205, Transcript of paraspeckle component 1, humanhuman

TSL 2

Gene PSPC1, Length 448 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-205ENST00000497722 AEBP2Q6ZN18 517 aaPredicted RBP23.06■■□□□ 1.28
PSPC1-205ENST00000497722 CHIC1Q5VXU3 224 aa21.68■■□□□ 1.06
PSPC1-205ENST00000497722 SENP3Q9H4L4 574 aaPredicted RBP19.88■□□□□ 0.77
PSPC1-205ENST00000497722 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
PSPC1-205ENST00000497722 FOXD1Q16676 465 aa18.51■□□□□ 0.55
PSPC1-205ENST00000497722 POTEDQ86YR6 584 aa18.04■□□□□ 0.48
PSPC1-205ENST00000497722 MSH5O43196 834 aa17.64■□□□□ 0.41
PSPC1-205ENST00000497722 PIAS4Q8N2W9 510 aaPredicted RBP17.22■□□□□ 0.35
PSPC1-205ENST00000497722 PLPPR3Q6T4P5 718 aa16.94■□□□□ 0.3
PSPC1-205ENST00000497722 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
PSPC1-205ENST00000497722 ADRA2BP18089 450 aa16.77■□□□□ 0.28
PSPC1-205ENST00000497722 DMRT2Q9Y5R5 561 aa15.65■□□□□ 0.1
PSPC1-205ENST00000497722 MAPK8IP2Q13387 824 aaPredicted RBP15.54■□□□□ 0.08
PSPC1-205ENST00000497722 SCAF1Q9H7N4 1312 aaKnown RBP15.48■□□□□ 0.07
PSPC1-205ENST00000497722 CACNB1Q02641 598 aaPredicted RBP15.42■□□□□ 0.06
PSPC1-205ENST00000497722 DCAF8L1A6NGE4 600 aa15.05■□□□□ -0
PSPC1-205ENST00000497722 RNF39Q9H2S5 420 aa14.94□□□□□ -0.02
PSPC1-205ENST00000497722 HOXD11P31277 338 aaPredicted RBP14.86□□□□□ -0.03
PSPC1-205ENST00000497722 C1QBPQ07021 282 aaKnown RBP14.74□□□□□ -0.05
PSPC1-205ENST00000497722 PPP4R3CPQ6ZMV5 832 aa14.73□□□□□ -0.05
PSPC1-205ENST00000497722 CNKSR2Q8WXI2 1034 aa14.62□□□□□ -0.07
PSPC1-205ENST00000497722 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
PSPC1-205ENST00000497722 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
PSPC1-205ENST00000497722 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.18□□□□□ -0.141e-6■■■■□ 21.9
PSPC1-205ENST00000497722 NCBP3Q53F19 620 aaKnown RBP14.07□□□□□ -0.16
PSPC1-205ENST00000497722 POTEHQ6S545 545 aa14.06□□□□□ -0.16
PSPC1-205ENST00000497722 NPM3O75607 178 aaKnown RBP13.79□□□□□ -0.2
PSPC1-205ENST00000497722 DSG3P32926 999 aa13.79□□□□□ -0.2
PSPC1-205ENST00000497722 CAPN15O75808 1086 aa13.78□□□□□ -0.2
PSPC1-205ENST00000497722 U3KPZ7 1027 aaPredicted RBP13.78□□□□□ -0.2
PSPC1-205ENST00000497722 KCNA4P22459 653 aa13.73□□□□□ -0.21
PSPC1-205ENST00000497722 SPINK5Q9NQ38 1064 aaPredicted RBP13.72□□□□□ -0.21
PSPC1-205ENST00000497722 APLP2Q06481 763 aa13.48□□□□□ -0.25
PSPC1-205ENST00000497722 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
PSPC1-205ENST00000497722 TRHP20396 242 aaPredicted RBP13.41□□□□□ -0.26
PSPC1-205ENST00000497722 ABCB7O75027 752 aa13.37□□□□□ -0.27
PSPC1-205ENST00000497722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.31□□□□□ -0.28
PSPC1-205ENST00000497722 HNRNPUL2Q1KMD3 747 aaKnown RBP13.31□□□□□ -0.28
PSPC1-205ENST00000497722 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
PSPC1-205ENST00000497722 RBM42Q9BTD8 480 aaKnown RBP13.28□□□□□ -0.28
PSPC1-205ENST00000497722 SAMD1Q6SPF0 538 aaPredicted RBP13.19□□□□□ -0.3
PSPC1-205ENST00000497722 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
PSPC1-205ENST00000497722 SLC4A1APQ9BWU0 796 aaKnown RBP12.96□□□□□ -0.33
PSPC1-205ENST00000497722 SP7Q8TDD2 431 aaPredicted RBP12.94□□□□□ -0.34
PSPC1-205ENST00000497722 POLA2Q14181 598 aa12.92□□□□□ -0.34
PSPC1-205ENST00000497722 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
PSPC1-205ENST00000497722 AKT1S1Q96B36 256 aa12.81□□□□□ -0.36
PSPC1-205ENST00000497722 ZBTB12Q9Y330 459 aaPredicted RBP12.73□□□□□ -0.37
PSPC1-205ENST00000497722 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
PSPC1-205ENST00000497722 ZBTB22O15209 634 aa12.68□□□□□ -0.38
PSPC1-205ENST00000497722 PIP4P2Q8N4L2 257 aa12.68□□□□□ -0.38
PSPC1-205ENST00000497722 REM2Q8IYK8 340 aaPredicted RBP12.65□□□□□ -0.38
PSPC1-205ENST00000497722 HAX1O00165 279 aa12.62□□□□□ -0.39
PSPC1-205ENST00000497722 OSCARQ8IYS5 282 aa12.54□□□□□ -0.4
PSPC1-205ENST00000497722 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
PSPC1-205ENST00000497722 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.41
PSPC1-205ENST00000497722 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
PSPC1-205ENST00000497722 EVX2Q03828 476 aa12.32□□□□□ -0.44
PSPC1-205ENST00000497722 CSRNP3Q8WYN3 585 aa12.32□□□□□ -0.44
PSPC1-205ENST00000497722 ATXN8OSP0DMR3 200 aa12.31□□□□□ -0.44
PSPC1-205ENST00000497722 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
PSPC1-205ENST00000497722 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
PSPC1-205ENST00000497722 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
PSPC1-205ENST00000497722 PRKAR2AP13861 404 aaKnown RBP12.2□□□□□ -0.46
PSPC1-205ENST00000497722 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
PSPC1-205ENST00000497722 SPDYE1Q8NFV5 336 aaPredicted RBP12.16□□□□□ -0.46
PSPC1-205ENST00000497722 FBLN2P98095 1184 aa12.15□□□□□ -0.46
PSPC1-205ENST00000497722 C19orf67A6NJJ6 358 aa12.14□□□□□ -0.47
PSPC1-205ENST00000497722 CLEC11AQ9Y240 323 aa12.13□□□□□ -0.47
PSPC1-205ENST00000497722 LHX8Q68G74 356 aa12.11□□□□□ -0.47
PSPC1-205ENST00000497722 GABBR2O75899 941 aa12.08□□□□□ -0.48
PSPC1-205ENST00000497722 SSUH2Q9Y2M2 353 aa11.98□□□□□ -0.49
PSPC1-205ENST00000497722 ZNF692Q9BU19 519 aaPredicted RBP11.97□□□□□ -0.49
PSPC1-205ENST00000497722 CHADLQ6NUI6 762 aa11.91□□□□□ -0.5
PSPC1-205ENST00000497722 MKRN4PQ13434 485 aaPredicted RBP11.88□□□□□ -0.51
PSPC1-205ENST00000497722 PRR29P0C7W0 189 aa11.86□□□□□ -0.51
PSPC1-205ENST00000497722 CLCN6P51797 869 aa11.82□□□□□ -0.52
PSPC1-205ENST00000497722 CD44P16070 742 aaKnown RBP11.81□□□□□ -0.52
PSPC1-205ENST00000497722 PLSCR2Q9NRY7 297 aa11.8□□□□□ -0.52
PSPC1-205ENST00000497722 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
PSPC1-205ENST00000497722 PABPN1Q86U42 306 aaKnown RBP eCLIP11.77□□□□□ -0.53
PSPC1-205ENST00000497722 FARP1Q9Y4F1 1045 aaPredicted RBP11.72□□□□□ -0.53
PSPC1-205ENST00000497722 DCBLD2Q96PD2 775 aa11.7□□□□□ -0.54
PSPC1-205ENST00000497722 ZNF579Q8NAF0 562 aaKnown RBP11.6□□□□□ -0.55
PSPC1-205ENST00000497722 ZRANB1Q9UGI0 708 aa11.54□□□□□ -0.56
PSPC1-205ENST00000497722 OTUD5Q96G74 571 aa11.47□□□□□ -0.57
PSPC1-205ENST00000497722 GALR2O43603 387 aaPredicted RBP11.45□□□□□ -0.58
PSPC1-205ENST00000497722 POTEMA6NI47 508 aa11.44□□□□□ -0.58
PSPC1-205ENST00000497722 PAK3O75914 559 aaPredicted RBP11.41□□□□□ -0.58
PSPC1-205ENST00000497722 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
PSPC1-205ENST00000497722 POTEGQ6S5H5 508 aa11.39□□□□□ -0.59
PSPC1-205ENST00000497722 CREBZFQ9NS37 354 aa11.39□□□□□ -0.59
PSPC1-205ENST00000497722 SPDYE4A6NLX3 237 aa11.37□□□□□ -0.59
PSPC1-205ENST00000497722 POTEB2H3BUK9 544 aa11.37□□□□□ -0.59
PSPC1-205ENST00000497722 PCDH10Q9P2E7 1040 aa11.35□□□□□ -0.59
PSPC1-205ENST00000497722 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
PSPC1-205ENST00000497722 PROM2Q8N271 834 aa11.27□□□□□ -0.61
PSPC1-205ENST00000497722 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
PSPC1-205ENST00000497722 METRNQ9UJH8 293 aa11.24□□□□□ -0.61
PSPC1-205ENST00000497722 MAMSTRQ6ZN01 415 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms