RNA–Protein interactions for RNA: ENST00000497163.1

CPS1-209, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 3

Gene CPS1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-209ENST00000497163 AEBP2Q6ZN18 517 aaPredicted RBP24.95■■□□□ 1.58
CPS1-209ENST00000497163 CHIC1Q5VXU3 224 aa23.58■■□□□ 1.37
CPS1-209ENST00000497163 SENP3Q9H4L4 574 aaPredicted RBP21.25■□□□□ 0.99
CPS1-209ENST00000497163 PHF23Q9BUL5 403 aaPredicted RBP20.98■□□□□ 0.95
CPS1-209ENST00000497163 FOXD1Q16676 465 aa19.84■□□□□ 0.77
CPS1-209ENST00000497163 PLPPR3Q6T4P5 718 aa18.77■□□□□ 0.6
CPS1-209ENST00000497163 MSH5O43196 834 aa18.58■□□□□ 0.56
CPS1-209ENST00000497163 PPP6R1Q9UPN7 881 aa18.5■□□□□ 0.55
CPS1-209ENST00000497163 PIAS4Q8N2W9 510 aaPredicted RBP18.47■□□□□ 0.55
CPS1-209ENST00000497163 ADRA2BP18089 450 aa18.4■□□□□ 0.54
CPS1-209ENST00000497163 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
CPS1-209ENST00000497163 MAPK8IP2Q13387 824 aaPredicted RBP16.94■□□□□ 0.3
CPS1-209ENST00000497163 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
CPS1-209ENST00000497163 SCAF1Q9H7N4 1312 aaKnown RBP16.8■□□□□ 0.28
CPS1-209ENST00000497163 PPP4R3CPQ6ZMV5 832 aa16.44■□□□□ 0.22
CPS1-209ENST00000497163 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
CPS1-209ENST00000497163 CNKSR2Q8WXI2 1034 aa16.16■□□□□ 0.18
CPS1-209ENST00000497163 DCAF8L1A6NGE4 600 aa16.07■□□□□ 0.16
CPS1-209ENST00000497163 RNF216Q9NWF9 866 aaPredicted RBP16.05■□□□□ 0.16
CPS1-209ENST00000497163 CACNB1Q02641 598 aaPredicted RBP15.98■□□□□ 0.15
CPS1-209ENST00000497163 RNF39Q9H2S5 420 aa15.88■□□□□ 0.13
CPS1-209ENST00000497163 NCBP3Q53F19 620 aaKnown RBP15.75■□□□□ 0.11
CPS1-209ENST00000497163 DNAJC5BQ9UF47 199 aa15.71■□□□□ 0.11
CPS1-209ENST00000497163 C1QBPQ07021 282 aaKnown RBP15.62■□□□□ 0.09
CPS1-209ENST00000497163 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
CPS1-209ENST00000497163 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.05
CPS1-209ENST00000497163 KCNA4P22459 653 aa15.17■□□□□ 0.02
CPS1-209ENST00000497163 U3KPZ7 1027 aaPredicted RBP15.09■□□□□ 0.01
CPS1-209ENST00000497163 SLC4A2P04920 1241 aa14.91□□□□□ -0.02
CPS1-209ENST00000497163 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
CPS1-209ENST00000497163 DSG3P32926 999 aa14.83□□□□□ -0.04
CPS1-209ENST00000497163 CAPN15O75808 1086 aa14.82□□□□□ -0.04
CPS1-209ENST00000497163 APLP2Q06481 763 aa14.61□□□□□ -0.07
CPS1-209ENST00000497163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.59□□□□□ -0.07
CPS1-209ENST00000497163 HNRNPUL2Q1KMD3 747 aaKnown RBP14.59□□□□□ -0.07
CPS1-209ENST00000497163 TRHP20396 242 aaPredicted RBP14.56□□□□□ -0.08
CPS1-209ENST00000497163 ZNF219Q9P2Y4 722 aaPredicted RBP14.56□□□□□ -0.08
CPS1-209ENST00000497163 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
CPS1-209ENST00000497163 ABCB7O75027 752 aa14.48□□□□□ -0.09
CPS1-209ENST00000497163 MYCNP04198 464 aaPredicted RBP14.38□□□□□ -0.11
CPS1-209ENST00000497163 POTEHQ6S545 545 aa14.33□□□□□ -0.12
CPS1-209ENST00000497163 SLC4A1APQ9BWU0 796 aaKnown RBP14.27□□□□□ -0.13
CPS1-209ENST00000497163 POLA2Q14181 598 aa14.18□□□□□ -0.14
CPS1-209ENST00000497163 FOXD4L1Q9NU39 408 aa14.17□□□□□ -0.14
CPS1-209ENST00000497163 RBM42Q9BTD8 480 aaKnown RBP14.11□□□□□ -0.15
CPS1-209ENST00000497163 ATF5Q9Y2D1 282 aaPredicted RBP14.09□□□□□ -0.15
CPS1-209ENST00000497163 ZBTB22O15209 634 aa13.97□□□□□ -0.17
CPS1-209ENST00000497163 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
CPS1-209ENST00000497163 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
CPS1-209ENST00000497163 AKT1S1Q96B36 256 aa13.79□□□□□ -0.2
CPS1-209ENST00000497163 ATXN8OSP0DMR3 200 aa13.78□□□□□ -0.2
CPS1-209ENST00000497163 OSCARQ8IYS5 282 aa13.72□□□□□ -0.21
CPS1-209ENST00000497163 REM2Q8IYK8 340 aaPredicted RBP13.66□□□□□ -0.22
CPS1-209ENST00000497163 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
CPS1-209ENST00000497163 PITPNM1O00562 1244 aa13.51□□□□□ -0.25
CPS1-209ENST00000497163 FBLN2P98095 1184 aa13.48□□□□□ -0.25
CPS1-209ENST00000497163 SPDYE2BA6NHP3 402 aa13.46□□□□□ -0.25
CPS1-209ENST00000497163 SPDYE6P0CI01 402 aa13.46□□□□□ -0.25
CPS1-209ENST00000497163 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.25
CPS1-209ENST00000497163 FXR2P51116 673 aaKnown RBP eCLIP13.45□□□□□ -0.26
CPS1-209ENST00000497163 MKRN4PQ13434 485 aaPredicted RBP13.44□□□□□ -0.26
CPS1-209ENST00000497163 SP7Q8TDD2 431 aaPredicted RBP13.39□□□□□ -0.27
CPS1-209ENST00000497163 SSUH2Q9Y2M2 353 aa13.3□□□□□ -0.28
CPS1-209ENST00000497163 ZNF692Q9BU19 519 aaPredicted RBP13.26□□□□□ -0.29
CPS1-209ENST00000497163 HAX1O00165 279 aa13.25□□□□□ -0.29
CPS1-209ENST00000497163 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
CPS1-209ENST00000497163 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
CPS1-209ENST00000497163 CLEC11AQ9Y240 323 aa13.18□□□□□ -0.3
CPS1-209ENST00000497163 EVX2Q03828 476 aa13.15□□□□□ -0.3
CPS1-209ENST00000497163 PRKAR2AP13861 404 aaKnown RBP13.14□□□□□ -0.31
CPS1-209ENST00000497163 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
CPS1-209ENST00000497163 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
CPS1-209ENST00000497163 PRR29P0C7W0 189 aa12.97□□□□□ -0.33
CPS1-209ENST00000497163 CHADLQ6NUI6 762 aa12.97□□□□□ -0.33
CPS1-209ENST00000497163 EHMT2Q96KQ7 1210 aa12.91□□□□□ -0.34
CPS1-209ENST00000497163 GABBR2O75899 941 aa12.83□□□□□ -0.36
CPS1-209ENST00000497163 FARP1Q9Y4F1 1045 aaPredicted RBP12.79□□□□□ -0.36
CPS1-209ENST00000497163 CD44P16070 742 aaKnown RBP12.71□□□□□ -0.37
CPS1-209ENST00000497163 SPDYE4A6NLX3 237 aa12.7□□□□□ -0.38
CPS1-209ENST00000497163 STAG3Q9UJ98 1225 aa12.69□□□□□ -0.38
CPS1-209ENST00000497163 CREBZFQ9NS37 354 aa12.67□□□□□ -0.38
CPS1-209ENST00000497163 CLCN6P51797 869 aa12.6□□□□□ -0.39
CPS1-209ENST00000497163 POTEIP0CG38 1075 aa12.59□□□□□ -0.39
CPS1-209ENST00000497163 LHX8Q68G74 356 aa12.55□□□□□ -0.4
CPS1-209ENST00000497163 ZNF579Q8NAF0 562 aaKnown RBP12.55□□□□□ -0.4
CPS1-209ENST00000497163 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
CPS1-209ENST00000497163 MNX1P50219 401 aaPredicted RBP12.48□□□□□ -0.41
CPS1-209ENST00000497163 PROM2Q8N271 834 aa12.46□□□□□ -0.41
CPS1-209ENST00000497163 DCBLD2Q96PD2 775 aa12.41□□□□□ -0.42
CPS1-209ENST00000497163 GALR2O43603 387 aaPredicted RBP12.39□□□□□ -0.43
CPS1-209ENST00000497163 NPM1P06748 294 aaKnown RBP eCLIP12.39□□□□□ -0.43
CPS1-209ENST00000497163 PAK3O75914 559 aaPredicted RBP12.36□□□□□ -0.43
CPS1-209ENST00000497163 PHF12Q96QT6 1004 aa12.34□□□□□ -0.43
CPS1-209ENST00000497163 PELP1Q8IZL8 1130 aaKnown RBP12.19□□□□□ -0.46
CPS1-209ENST00000497163 MS4A3Q96HJ5 214 aa12.18□□□□□ -0.46
CPS1-209ENST00000497163 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
CPS1-209ENST00000497163 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
CPS1-209ENST00000497163 ASTLQ6HA08 431 aaPredicted RBP12.15□□□□□ -0.46
CPS1-209ENST00000497163 TSPYL2Q9H2G4 693 aaPredicted RBP12.15□□□□□ -0.46
CPS1-209ENST00000497163 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms