RNA–Protein interactions for RNA: ENST00000497107.1

ITGA6-211, Transcript of integrin subunit alpha 6, humanhuman

TSL 2

Gene ITGA6, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA6-211ENST00000497107 AEBP2Q6ZN18 517 aaPredicted RBP26.49■■□□□ 1.83
ITGA6-211ENST00000497107 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
ITGA6-211ENST00000497107 SENP3Q9H4L4 574 aaPredicted RBP22.59■■□□□ 1.21
ITGA6-211ENST00000497107 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
ITGA6-211ENST00000497107 FOXD1Q16676 465 aa21.16■□□□□ 0.98
ITGA6-211ENST00000497107 POTEDQ86YR6 584 aa20.33■□□□□ 0.85
ITGA6-211ENST00000497107 MSH5O43196 834 aa19.94■□□□□ 0.78
ITGA6-211ENST00000497107 PIAS4Q8N2W9 510 aaPredicted RBP19.6■□□□□ 0.73
ITGA6-211ENST00000497107 PPP6R1Q9UPN7 881 aa19.44■□□□□ 0.7
ITGA6-211ENST00000497107 PLPPR3Q6T4P5 718 aa19.43■□□□□ 0.7
ITGA6-211ENST00000497107 ADRA2BP18089 450 aa19.31■□□□□ 0.68
ITGA6-211ENST00000497107 MAPK8IP2Q13387 824 aaPredicted RBP17.89■□□□□ 0.45
ITGA6-211ENST00000497107 DMRT2Q9Y5R5 561 aa17.87■□□□□ 0.45
ITGA6-211ENST00000497107 SCAF1Q9H7N4 1312 aaKnown RBP17.59■□□□□ 0.41
ITGA6-211ENST00000497107 CACNB1Q02641 598 aaPredicted RBP17.38■□□□□ 0.37
ITGA6-211ENST00000497107 DCAF8L1A6NGE4 600 aa17.06■□□□□ 0.32
ITGA6-211ENST00000497107 HOXD11P31277 338 aaPredicted RBP17.04■□□□□ 0.32
ITGA6-211ENST00000497107 RNF39Q9H2S5 420 aa17.01■□□□□ 0.31
ITGA6-211ENST00000497107 PPP4R3CPQ6ZMV5 832 aa16.98■□□□□ 0.31
ITGA6-211ENST00000497107 CNKSR2Q8WXI2 1034 aa16.78■□□□□ 0.28
ITGA6-211ENST00000497107 RNF216Q9NWF9 866 aaPredicted RBP16.75■□□□□ 0.27
ITGA6-211ENST00000497107 C1QBPQ07021 282 aaKnown RBP16.7■□□□□ 0.26
ITGA6-211ENST00000497107 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
ITGA6-211ENST00000497107 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.14■□□□□ 0.17
ITGA6-211ENST00000497107 NCBP3Q53F19 620 aaKnown RBP16.13■□□□□ 0.17
ITGA6-211ENST00000497107 NPM3O75607 178 aaKnown RBP15.97■□□□□ 0.15
ITGA6-211ENST00000497107 KCNA4P22459 653 aa15.89■□□□□ 0.13
ITGA6-211ENST00000497107 U3KPZ7 1027 aaPredicted RBP15.83■□□□□ 0.12
ITGA6-211ENST00000497107 POTEHQ6S545 545 aa15.82■□□□□ 0.12
ITGA6-211ENST00000497107 DSG3P32926 999 aa15.77■□□□□ 0.12
ITGA6-211ENST00000497107 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
ITGA6-211ENST00000497107 CAPN15O75808 1086 aa15.67■□□□□ 0.1
ITGA6-211ENST00000497107 SLC4A2P04920 1241 aa15.4■□□□□ 0.06
ITGA6-211ENST00000497107 TRHP20396 242 aaPredicted RBP15.31■□□□□ 0.04
ITGA6-211ENST00000497107 ABCB7O75027 752 aa15.29■□□□□ 0.04
ITGA6-211ENST00000497107 ZNF219Q9P2Y4 722 aaPredicted RBP15.27■□□□□ 0.04
ITGA6-211ENST00000497107 APLP2Q06481 763 aa15.24■□□□□ 0.03
ITGA6-211ENST00000497107 SLC4A1APQ9BWU0 796 aaKnown RBP15.17■□□□□ 0.02
ITGA6-211ENST00000497107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.13■□□□□ 0.01
ITGA6-211ENST00000497107 HNRNPUL2Q1KMD3 747 aaKnown RBP15.13■□□□□ 0.01
ITGA6-211ENST00000497107 SAMD1Q6SPF0 538 aaPredicted RBP15.04■□□□□ -0
ITGA6-211ENST00000497107 RBM42Q9BTD8 480 aaKnown RBP14.99□□□□□ -0.01
ITGA6-211ENST00000497107 CHRDL2Q6WN34 429 aa14.88□□□□□ -0.03
ITGA6-211ENST00000497107 POLA2Q14181 598 aa14.81□□□□□ -0.04
ITGA6-211ENST00000497107 MYCNP04198 464 aaPredicted RBP14.75□□□□□ -0.05
ITGA6-211ENST00000497107 FOXD4L1Q9NU39 408 aa14.72□□□□□ -0.05
ITGA6-211ENST00000497107 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
ITGA6-211ENST00000497107 SP7Q8TDD2 431 aaPredicted RBP14.6□□□□□ -0.07
ITGA6-211ENST00000497107 ZBTB22O15209 634 aa14.59□□□□□ -0.07
ITGA6-211ENST00000497107 AKT1S1Q96B36 256 aa14.58□□□□□ -0.08
ITGA6-211ENST00000497107 ATF5Q9Y2D1 282 aaPredicted RBP14.51□□□□□ -0.09
ITGA6-211ENST00000497107 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
ITGA6-211ENST00000497107 REM2Q8IYK8 340 aaPredicted RBP14.45□□□□□ -0.1
ITGA6-211ENST00000497107 PIP4P2Q8N4L2 257 aa14.45□□□□□ -0.1
ITGA6-211ENST00000497107 ZBTB12Q9Y330 459 aaPredicted RBP14.44□□□□□ -0.1
ITGA6-211ENST00000497107 OSCARQ8IYS5 282 aa14.37□□□□□ -0.11
ITGA6-211ENST00000497107 PITPNM1O00562 1244 aa14.31□□□□□ -0.12
ITGA6-211ENST00000497107 FXR2P51116 673 aaKnown RBP eCLIP14.3□□□□□ -0.12
ITGA6-211ENST00000497107 HAX1O00165 279 aa14.26□□□□□ -0.13
ITGA6-211ENST00000497107 ATXN8OSP0DMR3 200 aa14.25□□□□□ -0.13
ITGA6-211ENST00000497107 EVX2Q03828 476 aa14.14□□□□□ -0.15
ITGA6-211ENST00000497107 SPDYE2BA6NHP3 402 aa13.99□□□□□ -0.17
ITGA6-211ENST00000497107 SPDYE6P0CI01 402 aa13.99□□□□□ -0.17
ITGA6-211ENST00000497107 SPDYE2Q495Y8 402 aa13.99□□□□□ -0.17
ITGA6-211ENST00000497107 PRKAR2AP13861 404 aaKnown RBP13.91□□□□□ -0.18
ITGA6-211ENST00000497107 C19orf67A6NJJ6 358 aa13.86□□□□□ -0.19
ITGA6-211ENST00000497107 FBLN2P98095 1184 aa13.86□□□□□ -0.19
ITGA6-211ENST00000497107 SPDYE1Q8NFV5 336 aaPredicted RBP13.84□□□□□ -0.19
ITGA6-211ENST00000497107 CLEC11AQ9Y240 323 aa13.82□□□□□ -0.2
ITGA6-211ENST00000497107 MKRN4PQ13434 485 aaPredicted RBP13.81□□□□□ -0.2
ITGA6-211ENST00000497107 SSUH2Q9Y2M2 353 aa13.79□□□□□ -0.2
ITGA6-211ENST00000497107 GABBR2O75899 941 aa13.76□□□□□ -0.21
ITGA6-211ENST00000497107 ZNF692Q9BU19 519 aaPredicted RBP13.72□□□□□ -0.21
ITGA6-211ENST00000497107 LHX8Q68G74 356 aa13.67□□□□□ -0.22
ITGA6-211ENST00000497107 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
ITGA6-211ENST00000497107 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
ITGA6-211ENST00000497107 PABPN1Q86U42 306 aaKnown RBP eCLIP13.52□□□□□ -0.25
ITGA6-211ENST00000497107 POTEIP0CG38 1075 aa13.51□□□□□ -0.25
ITGA6-211ENST00000497107 CD44P16070 742 aaKnown RBP13.43□□□□□ -0.26
ITGA6-211ENST00000497107 FARP1Q9Y4F1 1045 aaPredicted RBP13.4□□□□□ -0.26
ITGA6-211ENST00000497107 NISCHQ9Y2I1 1504 aa13.37□□□□□ -0.27
ITGA6-211ENST00000497107 CLCN6P51797 869 aa13.34□□□□□ -0.27
ITGA6-211ENST00000497107 ZNF579Q8NAF0 562 aaKnown RBP13.23□□□□□ -0.29
ITGA6-211ENST00000497107 DCBLD2Q96PD2 775 aa13.22□□□□□ -0.29
ITGA6-211ENST00000497107 SPDYE4A6NLX3 237 aa13.2□□□□□ -0.3
ITGA6-211ENST00000497107 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
ITGA6-211ENST00000497107 CREBZFQ9NS37 354 aa13.15□□□□□ -0.3
ITGA6-211ENST00000497107 FKBP8Q14318 412 aa13.13□□□□□ -0.31
ITGA6-211ENST00000497107 PLSCR2Q9NRY7 297 aa13.13□□□□□ -0.31
ITGA6-211ENST00000497107 GALR2O43603 387 aaPredicted RBP13.11□□□□□ -0.31
ITGA6-211ENST00000497107 OTUD5Q96G74 571 aa13.08□□□□□ -0.32
ITGA6-211ENST00000497107 POTEB2H3BUK9 544 aa13.06□□□□□ -0.32
ITGA6-211ENST00000497107 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
ITGA6-211ENST00000497107 PROM2Q8N271 834 aa12.96□□□□□ -0.33
ITGA6-211ENST00000497107 PHF12Q96QT6 1004 aa12.96□□□□□ -0.33
ITGA6-211ENST00000497107 PELP1Q8IZL8 1130 aaKnown RBP12.92□□□□□ -0.34
ITGA6-211ENST00000497107 POTEMA6NI47 508 aa12.9□□□□□ -0.34
ITGA6-211ENST00000497107 MNX1P50219 401 aaPredicted RBP12.9□□□□□ -0.34
ITGA6-211ENST00000497107 PAK3O75914 559 aaPredicted RBP12.89□□□□□ -0.35
ITGA6-211ENST00000497107 POTEGQ6S5H5 508 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms