RNA–Protein interactions for RNA: ENST00000497022.1

VPS26A-208, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3

Gene VPS26A, Length 458 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-208ENST00000497022 AEBP2Q6ZN18 517 aaPredicted RBP24.93■■□□□ 1.58
VPS26A-208ENST00000497022 CHIC1Q5VXU3 224 aa23.52■■□□□ 1.36
VPS26A-208ENST00000497022 SENP3Q9H4L4 574 aaPredicted RBP21.4■■□□□ 1.02
VPS26A-208ENST00000497022 PHF23Q9BUL5 403 aaPredicted RBP21.02■□□□□ 0.96
VPS26A-208ENST00000497022 FOXD1Q16676 465 aa19.89■□□□□ 0.77
VPS26A-208ENST00000497022 MSH5O43196 834 aa18.79■□□□□ 0.6
VPS26A-208ENST00000497022 PLPPR3Q6T4P5 718 aa18.72■□□□□ 0.59
VPS26A-208ENST00000497022 POTEDQ86YR6 584 aa18.64■□□□□ 0.57
VPS26A-208ENST00000497022 PIAS4Q8N2W9 510 aaPredicted RBP18.56■□□□□ 0.56
VPS26A-208ENST00000497022 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
VPS26A-208ENST00000497022 ADRA2BP18089 450 aa18.32■□□□□ 0.52
VPS26A-208ENST00000497022 DMRT2Q9Y5R5 561 aa16.92■□□□□ 0.3
VPS26A-208ENST00000497022 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
VPS26A-208ENST00000497022 MAPK8IP2Q13387 824 aaPredicted RBP16.87■□□□□ 0.29
VPS26A-208ENST00000497022 PPP4R3CPQ6ZMV5 832 aa16.34■□□□□ 0.21
VPS26A-208ENST00000497022 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
VPS26A-208ENST00000497022 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
VPS26A-208ENST00000497022 DCAF8L1A6NGE4 600 aa16.16■□□□□ 0.18
VPS26A-208ENST00000497022 CNKSR2Q8WXI2 1034 aa16.13■□□□□ 0.17
VPS26A-208ENST00000497022 RNF216Q9NWF9 866 aaPredicted RBP16.04■□□□□ 0.16
VPS26A-208ENST00000497022 RNF39Q9H2S5 420 aa15.97■□□□□ 0.15
VPS26A-208ENST00000497022 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
VPS26A-208ENST00000497022 C1QBPQ07021 282 aaKnown RBP15.77■□□□□ 0.12
VPS26A-208ENST00000497022 NCBP3Q53F19 620 aaKnown RBP15.7■□□□□ 0.1
VPS26A-208ENST00000497022 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS26A-208ENST00000497022 NPM3O75607 178 aaKnown RBP15.41■□□□□ 0.06
VPS26A-208ENST00000497022 U3KPZ7 1027 aaPredicted RBP15.06■□□□□ 0
VPS26A-208ENST00000497022 CAPN15O75808 1086 aa14.89□□□□□ -0.03
VPS26A-208ENST00000497022 KCNA4P22459 653 aa14.89□□□□□ -0.03
VPS26A-208ENST00000497022 DSG3P32926 999 aa14.87□□□□□ -0.03
VPS26A-208ENST00000497022 SPINK5Q9NQ38 1064 aaPredicted RBP14.87□□□□□ -0.03
VPS26A-208ENST00000497022 SLC4A2P04920 1241 aa14.76□□□□□ -0.05
VPS26A-208ENST00000497022 APLP2Q06481 763 aa14.74□□□□□ -0.05
VPS26A-208ENST00000497022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.65□□□□□ -0.06
VPS26A-208ENST00000497022 HNRNPUL2Q1KMD3 747 aaKnown RBP14.65□□□□□ -0.06
VPS26A-208ENST00000497022 ZNF219Q9P2Y4 722 aaPredicted RBP14.64□□□□□ -0.07
VPS26A-208ENST00000497022 POTEHQ6S545 545 aa14.58□□□□□ -0.08
VPS26A-208ENST00000497022 TRHP20396 242 aaPredicted RBP14.57□□□□□ -0.08
VPS26A-208ENST00000497022 SAMD1Q6SPF0 538 aaPredicted RBP14.53□□□□□ -0.08
VPS26A-208ENST00000497022 ABCB7O75027 752 aa14.49□□□□□ -0.09
VPS26A-208ENST00000497022 MYCNP04198 464 aaPredicted RBP14.31□□□□□ -0.12
VPS26A-208ENST00000497022 RBM42Q9BTD8 480 aaKnown RBP14.27□□□□□ -0.13
VPS26A-208ENST00000497022 POLA2Q14181 598 aa14.15□□□□□ -0.14
VPS26A-208ENST00000497022 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
VPS26A-208ENST00000497022 FOXD4L1Q9NU39 408 aa14.03□□□□□ -0.16
VPS26A-208ENST00000497022 CHRDL2Q6WN34 429 aa13.98□□□□□ -0.17
VPS26A-208ENST00000497022 ZBTB12Q9Y330 459 aaPredicted RBP13.95□□□□□ -0.18
VPS26A-208ENST00000497022 ATF5Q9Y2D1 282 aaPredicted RBP13.89□□□□□ -0.19
VPS26A-208ENST00000497022 AKT1S1Q96B36 256 aa13.87□□□□□ -0.19
VPS26A-208ENST00000497022 OSCARQ8IYS5 282 aa13.71□□□□□ -0.21
VPS26A-208ENST00000497022 REM2Q8IYK8 340 aaPredicted RBP13.69□□□□□ -0.22
VPS26A-208ENST00000497022 ZBTB22O15209 634 aa13.67□□□□□ -0.22
VPS26A-208ENST00000497022 ATXN8OSP0DMR3 200 aa13.67□□□□□ -0.22
VPS26A-208ENST00000497022 PIP4P2Q8N4L2 257 aa13.58□□□□□ -0.24
VPS26A-208ENST00000497022 SP7Q8TDD2 431 aaPredicted RBP13.57□□□□□ -0.24
VPS26A-208ENST00000497022 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
VPS26A-208ENST00000497022 FXR2P51116 673 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS26A-208ENST00000497022 SPDYE2BA6NHP3 402 aa13.47□□□□□ -0.25
VPS26A-208ENST00000497022 SPDYE6P0CI01 402 aa13.47□□□□□ -0.25
VPS26A-208ENST00000497022 FBLN2P98095 1184 aa13.47□□□□□ -0.25
VPS26A-208ENST00000497022 SPDYE2Q495Y8 402 aa13.47□□□□□ -0.25
VPS26A-208ENST00000497022 HAX1O00165 279 aa13.39□□□□□ -0.27
VPS26A-208ENST00000497022 SPDYE1Q8NFV5 336 aaPredicted RBP13.28□□□□□ -0.28
VPS26A-208ENST00000497022 MKRN4PQ13434 485 aaPredicted RBP13.27□□□□□ -0.29
VPS26A-208ENST00000497022 SSUH2Q9Y2M2 353 aa13.25□□□□□ -0.29
VPS26A-208ENST00000497022 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
VPS26A-208ENST00000497022 PRKAR2AP13861 404 aaKnown RBP13.19□□□□□ -0.3
VPS26A-208ENST00000497022 CLEC11AQ9Y240 323 aa13.19□□□□□ -0.3
VPS26A-208ENST00000497022 EVX2Q03828 476 aa13.15□□□□□ -0.3
VPS26A-208ENST00000497022 C19orf67A6NJJ6 358 aa13.07□□□□□ -0.32
VPS26A-208ENST00000497022 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS26A-208ENST00000497022 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
VPS26A-208ENST00000497022 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
VPS26A-208ENST00000497022 GABBR2O75899 941 aa12.9□□□□□ -0.34
VPS26A-208ENST00000497022 CSRNP3Q8WYN3 585 aa12.86□□□□□ -0.35
VPS26A-208ENST00000497022 FARP1Q9Y4F1 1045 aaPredicted RBP12.79□□□□□ -0.36
VPS26A-208ENST00000497022 CD44P16070 742 aaKnown RBP12.77□□□□□ -0.37
VPS26A-208ENST00000497022 CLCN6P51797 869 aa12.76□□□□□ -0.37
VPS26A-208ENST00000497022 LHX8Q68G74 356 aa12.71□□□□□ -0.37
VPS26A-208ENST00000497022 STAG3Q9UJ98 1225 aa12.69□□□□□ -0.38
VPS26A-208ENST00000497022 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
VPS26A-208ENST00000497022 ZNF579Q8NAF0 562 aaKnown RBP12.6□□□□□ -0.39
VPS26A-208ENST00000497022 CREBZFQ9NS37 354 aa12.59□□□□□ -0.39
VPS26A-208ENST00000497022 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
VPS26A-208ENST00000497022 ZRANB1Q9UGI0 708 aa12.54□□□□□ -0.4
VPS26A-208ENST00000497022 EHMT2Q96KQ7 1210 aa12.53□□□□□ -0.4
VPS26A-208ENST00000497022 DCBLD2Q96PD2 775 aa12.53□□□□□ -0.4
VPS26A-208ENST00000497022 PAK3O75914 559 aaPredicted RBP12.45□□□□□ -0.42
VPS26A-208ENST00000497022 NPM1P06748 294 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS26A-208ENST00000497022 GALR2O43603 387 aaPredicted RBP12.39□□□□□ -0.43
VPS26A-208ENST00000497022 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
VPS26A-208ENST00000497022 PHF12Q96QT6 1004 aa12.32□□□□□ -0.44
VPS26A-208ENST00000497022 PROM2Q8N271 834 aa12.27□□□□□ -0.45
VPS26A-208ENST00000497022 OTUD5Q96G74 571 aa12.19□□□□□ -0.46
VPS26A-208ENST00000497022 ASTLQ6HA08 431 aaPredicted RBP12.18□□□□□ -0.46
VPS26A-208ENST00000497022 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
VPS26A-208ENST00000497022 MS4A3Q96HJ5 214 aa12.17□□□□□ -0.46
VPS26A-208ENST00000497022 PELP1Q8IZL8 1130 aaKnown RBP12.15□□□□□ -0.46
VPS26A-208ENST00000497022 ATMINO43313 823 aaPredicted RBP12.12□□□□□ -0.47
VPS26A-208ENST00000497022 SLC39A7Q92504 469 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms